
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:31 04/04/2011

Input data from file "591-tomodel-phylip/chr1_2930.phylip" (7 taxa, 698 characters)

Minimum AIC  model: GTRG
Minimum AICc model: HKYG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
HKYG	16	-2397.1239	4827.0466	0.3722	0.3722
GTRG	20	-2393.0791	4827.3990	0.3121	0.6843
HKYIG	17	-2397.1051	4829.1102	0.1326	0.8170
GTRIG	21	-2393.0652	4829.4973	0.1093	0.9263
K2PG	13	-2402.7699	4832.0719	0.0302	0.9564
HKYI	16	-2400.2260	4833.2508	0.0167	0.9732
K2PIG	14	-2402.7506	4834.1162	0.0109	0.9840
GTRI	20	-2396.7636	4834.7679	0.0078	0.9919
SYMG	17	-2400.5314	4835.9628	0.0043	0.9962
K2PI	13	-2405.4588	4837.4498	0.0021	0.9982
SYMIG	18	-2400.5169	4838.0411	0.0015	0.9997
SYMI	17	-2403.3684	4841.6367	0.0003	1.0000
HKY	15	-2432.3633	4895.4305	0.0000	1.0000
GTR	19	-2428.4431	4896.0072	0.0000	1.0000
K2P	12	-2438.0054	4900.4663	0.0000	1.0000
SYM	16	-2435.8054	4904.4096	0.0000	1.0000
F81G	15	-2452.8455	4936.3948	0.0000	1.0000
F81IG	16	-2452.8461	4938.4911	0.0000	1.0000
F81I	15	-2454.7910	4940.2859	0.0000	1.0000
JC69G	12	-2460.0866	4944.6286	0.0000	1.0000
JC69IG	13	-2460.0941	4946.7205	0.0000	1.0000
JC69I	12	-2461.7790	4948.0135	0.0000	1.0000
F81	14	-2485.1687	4998.9523	0.0000	1.0000
JC69	11	-2492.4884	5007.3616	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2393.0791	4826.1582	0.3484	0.3484
HKYG	16	-2397.1239	4826.2478	0.3331	0.6815
GTRIG	21	-2393.0652	4828.1305	0.1300	0.8115
HKYIG	17	-2397.1051	4828.2102	0.1249	0.9364
K2PG	13	-2402.7699	4831.5397	0.0236	0.9600
HKYI	16	-2400.2260	4832.4519	0.0150	0.9750
K2PIG	14	-2402.7506	4833.5012	0.0089	0.9838
GTRI	20	-2396.7636	4833.5271	0.0087	0.9926
SYMG	17	-2400.5314	4835.0628	0.0041	0.9966
K2PI	13	-2405.4588	4836.9176	0.0016	0.9982
SYMIG	18	-2400.5169	4837.0338	0.0015	0.9998
SYMI	17	-2403.3684	4840.7367	0.0002	1.0000
HKY	15	-2432.3633	4894.7266	0.0000	1.0000
GTR	19	-2428.4431	4894.8863	0.0000	1.0000
K2P	12	-2438.0054	4900.0108	0.0000	1.0000
SYM	16	-2435.8054	4903.6108	0.0000	1.0000
F81G	15	-2452.8455	4935.6910	0.0000	1.0000
F81IG	16	-2452.8461	4937.6923	0.0000	1.0000
F81I	15	-2454.7910	4939.5820	0.0000	1.0000
JC69G	12	-2460.0866	4944.1731	0.0000	1.0000
JC69IG	13	-2460.0941	4946.1883	0.0000	1.0000
JC69I	12	-2461.7790	4947.5580	0.0000	1.0000
F81	14	-2485.1687	4998.3374	0.0000	1.0000
JC69	11	-2492.4884	5006.9768	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-2402.7699	4890.6666	0.8903	0.8903
K2PI	13	-2405.4588	4896.0444	0.0605	0.9508
K2PIG	14	-2402.7506	4897.1763	0.0344	0.9852
HKYG	16	-2397.1239	4899.0193	0.0137	0.9988
HKYI	16	-2400.2260	4905.2234	0.0006	0.9995
HKYIG	17	-2397.1051	4905.5299	0.0005	1.0000
SYMG	17	-2400.5314	4912.3825	0.0000	1.0000
GTRG	20	-2393.0791	4917.1226	0.0000	1.0000
SYMI	17	-2403.3684	4918.0565	0.0000	1.0000
SYMIG	18	-2400.5169	4918.9017	0.0000	1.0000
GTRIG	21	-2393.0652	4923.6431	0.0000	1.0000
GTRI	20	-2396.7636	4924.4915	0.0000	1.0000
K2P	12	-2438.0054	4954.5894	0.0000	1.0000
HKY	15	-2432.3633	4962.9499	0.0000	1.0000
SYM	16	-2435.8054	4976.3823	0.0000	1.0000
GTR	19	-2428.4431	4981.3024	0.0000	1.0000
JC69G	12	-2460.0866	4998.7517	0.0000	1.0000
JC69I	12	-2461.7790	5002.1366	0.0000	1.0000
F81G	15	-2452.8455	5003.9142	0.0000	1.0000
JC69IG	13	-2460.0941	5005.3151	0.0000	1.0000
F81I	15	-2454.7910	5007.8053	0.0000	1.0000
F81IG	16	-2452.8461	5010.4638	0.0000	1.0000
JC69	11	-2492.4884	5057.0072	0.0000	1.0000
F81	14	-2485.1687	5062.0125	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_2930.phylip = 1 - 698;
 Partition Dummy = 1:591-tomodel-phylip/chr1_2930.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_2930.phylip = 1 - 698;
 Partition Dummy = 1:591-tomodel-phylip/chr1_2930.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_2930.phylip = 1 - 698;
 Partition Dummy = 1:591-tomodel-phylip/chr1_2930.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

