
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:32 04/04/2011

Input data from file "591-tomodel-phylip/chr1_15369.phylip" (7 taxa, 710 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2504.1237	5049.4665	0.6411	0.6411
GTRIG	21	-2503.9603	5051.2636	0.2610	0.9021
GTRI	20	-2506.3316	5053.8823	0.0705	0.9725
SYMG	17	-2511.0324	5056.9493	0.0152	0.9878
SYMIG	18	-2510.8690	5058.7278	0.0062	0.9940
HKYG	16	-2513.9364	5060.6578	0.0024	0.9964
SYMI	17	-2512.9988	5060.8820	0.0021	0.9985
HKYIG	17	-2513.8137	5062.5117	0.0009	0.9995
HKYI	16	-2516.2331	5065.2512	0.0002	0.9997
K2PG	13	-2519.5370	5065.5970	0.0002	0.9999
K2PIG	14	-2519.4129	5067.4301	0.0001	1.0000
K2PI	13	-2521.6244	5069.7717	0.0000	1.0000
GTR	19	-2541.2200	5121.5414	0.0000	1.0000
SYM	16	-2548.1488	5129.0825	0.0000	1.0000
HKY	15	-2554.2818	5139.2552	0.0000	1.0000
K2P	12	-2559.4940	5143.4356	0.0000	1.0000
F81G	15	-2568.3348	5167.3613	0.0000	1.0000
F81IG	16	-2568.1538	5169.0926	0.0000	1.0000
F81I	15	-2569.6125	5169.9166	0.0000	1.0000
JC69G	12	-2573.1426	5170.7327	0.0000	1.0000
JC69IG	13	-2572.9505	5172.4240	0.0000	1.0000
JC69I	12	-2574.1862	5172.8201	0.0000	1.0000
F81	14	-2603.4736	5235.5514	0.0000	1.0000
JC69	11	-2607.4046	5237.1874	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2504.1237	5048.2474	0.6331	0.6331
GTRIG	21	-2503.9603	5049.9206	0.2742	0.9073
GTRI	20	-2506.3316	5052.6632	0.0696	0.9769
SYMG	17	-2511.0324	5056.0649	0.0127	0.9896
SYMIG	18	-2510.8690	5057.7379	0.0055	0.9951
HKYG	16	-2513.9364	5059.8728	0.0019	0.9970
SYMI	17	-2512.9988	5059.9976	0.0018	0.9988
HKYIG	17	-2513.8137	5061.6273	0.0008	0.9996
HKYI	16	-2516.2331	5064.4662	0.0002	0.9998
K2PG	13	-2519.5370	5065.0740	0.0001	0.9999
K2PIG	14	-2519.4129	5066.8258	0.0001	1.0000
K2PI	13	-2521.6244	5069.2487	0.0000	1.0000
GTR	19	-2541.2200	5120.4400	0.0000	1.0000
SYM	16	-2548.1488	5128.2975	0.0000	1.0000
HKY	15	-2554.2818	5138.5635	0.0000	1.0000
K2P	12	-2559.4940	5142.9880	0.0000	1.0000
F81G	15	-2568.3348	5166.6696	0.0000	1.0000
F81IG	16	-2568.1538	5168.3076	0.0000	1.0000
F81I	15	-2569.6125	5169.2250	0.0000	1.0000
JC69G	12	-2573.1426	5170.2851	0.0000	1.0000
JC69IG	13	-2572.9505	5171.9010	0.0000	1.0000
JC69I	12	-2574.1862	5172.3724	0.0000	1.0000
F81	14	-2603.4736	5234.9471	0.0000	1.0000
JC69	11	-2607.4046	5236.8092	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-2519.5370	5124.4225	0.8368	0.8368
K2PI	13	-2521.6244	5128.5972	0.1038	0.9406
K2PIG	14	-2519.4129	5130.7395	0.0356	0.9761
HKYG	16	-2513.9364	5132.9171	0.0120	0.9881
SYMG	17	-2511.0324	5133.6744	0.0082	0.9963
HKYI	16	-2516.2331	5137.5104	0.0012	0.9975
SYMI	17	-2512.9988	5137.6071	0.0011	0.9986
HKYIG	17	-2513.8137	5139.2368	0.0005	0.9991
GTRG	20	-2504.1237	5139.5527	0.0004	0.9996
SYMIG	18	-2510.8690	5139.9127	0.0004	0.9999
GTRI	20	-2506.3316	5143.9685	0.0000	1.0000
GTRIG	21	-2503.9603	5145.7911	0.0000	1.0000
K2P	12	-2559.4940	5197.7711	0.0000	1.0000
SYM	16	-2548.1488	5201.3418	0.0000	1.0000
HKY	15	-2554.2818	5207.0425	0.0000	1.0000
GTR	19	-2541.2200	5207.1800	0.0000	1.0000
JC69G	12	-2573.1426	5225.0683	0.0000	1.0000
JC69I	12	-2574.1862	5227.1556	0.0000	1.0000
JC69IG	13	-2572.9505	5231.2494	0.0000	1.0000
F81G	15	-2568.3348	5235.1486	0.0000	1.0000
F81I	15	-2569.6125	5237.7039	0.0000	1.0000
F81IG	16	-2568.1538	5241.3518	0.0000	1.0000
JC69	11	-2607.4046	5287.0271	0.0000	1.0000
F81	14	-2603.4736	5298.8608	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_15369.phylip = 1 - 710;
 Partition Dummy = 1:591-tomodel-phylip/chr1_15369.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_15369.phylip = 1 - 710;
 Partition Dummy = 1:591-tomodel-phylip/chr1_15369.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_15369.phylip = 1 - 710;
 Partition Dummy = 1:591-tomodel-phylip/chr1_15369.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

