
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:30 04/04/2011

Input data from file "591-tomodel-phylip/chr1_10056.phylip" (7 taxa, 715 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2529.7575	5100.7254	0.3874	0.3874
GTRI	20	-2530.7068	5102.6239	0.1499	0.5373
HKYG	16	-2534.9253	5102.6300	0.1495	0.6868
GTRIG	21	-2529.7725	5102.8783	0.1320	0.8188
HKYI	16	-2535.2262	5103.2318	0.1106	0.9294
HKYIG	17	-2534.7702	5104.4185	0.0611	0.9905
SYMG	17	-2537.3217	5109.5214	0.0048	0.9953
SYMI	17	-2538.3663	5111.6106	0.0017	0.9970
SYMIG	18	-2537.3404	5111.6635	0.0016	0.9986
K2PG	13	-2543.4185	5113.3563	0.0007	0.9993
K2PI	13	-2543.8813	5114.2819	0.0004	0.9997
K2PIG	14	-2543.3423	5115.2847	0.0003	1.0000
GTR	19	-2564.1857	5167.4649	0.0000	1.0000
HKY	15	-2569.9204	5170.5275	0.0000	1.0000
SYM	16	-2570.8517	5174.4829	0.0000	1.0000
K2P	12	-2577.1236	5178.6917	0.0000	1.0000
F81G	15	-2590.2945	5211.2756	0.0000	1.0000
F81I	15	-2590.7618	5212.2102	0.0000	1.0000
F81IG	16	-2590.3341	5213.4475	0.0000	1.0000
JC69G	12	-2599.1394	5222.7232	0.0000	1.0000
JC69I	12	-2599.5184	5223.4813	0.0000	1.0000
JC69IG	13	-2599.1437	5224.8066	0.0000	1.0000
F81	14	-2622.0849	5272.7699	0.0000	1.0000
JC69	11	-2630.1609	5282.6974	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2529.7575	5099.5151	0.4090	0.4090
GTRI	20	-2530.7068	5101.4135	0.1583	0.5673
GTRIG	21	-2529.7725	5101.5450	0.1482	0.7156
HKYG	16	-2534.9253	5101.8507	0.1272	0.8428
HKYI	16	-2535.2262	5102.4525	0.0942	0.9370
HKYIG	17	-2534.7702	5103.5404	0.0547	0.9916
SYMG	17	-2537.3217	5108.6433	0.0043	0.9959
SYMIG	18	-2537.3404	5110.6807	0.0015	0.9974
SYMI	17	-2538.3663	5110.7326	0.0015	0.9989
K2PG	13	-2543.4185	5112.8371	0.0005	0.9995
K2PI	13	-2543.8813	5113.7626	0.0003	0.9998
K2PIG	14	-2543.3423	5114.6847	0.0002	1.0000
GTR	19	-2564.1857	5166.3713	0.0000	1.0000
HKY	15	-2569.9204	5169.8408	0.0000	1.0000
SYM	16	-2570.8517	5173.7035	0.0000	1.0000
K2P	12	-2577.1236	5178.2473	0.0000	1.0000
F81G	15	-2590.2945	5210.5889	0.0000	1.0000
F81I	15	-2590.7618	5211.5235	0.0000	1.0000
F81IG	16	-2590.3341	5212.6682	0.0000	1.0000
JC69G	12	-2599.1394	5222.2787	0.0000	1.0000
JC69I	12	-2599.5184	5223.0368	0.0000	1.0000
JC69IG	13	-2599.1437	5224.2873	0.0000	1.0000
F81	14	-2622.0849	5272.1699	0.0000	1.0000
JC69	11	-2630.1609	5282.3219	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-2543.4185	5172.2768	0.4702	0.4702
K2PI	13	-2543.8813	5173.2023	0.2960	0.7662
HKYG	16	-2534.9253	5175.0072	0.1201	0.8863
HKYI	16	-2535.2262	5175.6090	0.0889	0.9752
K2PIG	14	-2543.3423	5178.6967	0.0190	0.9941
HKYIG	17	-2534.7702	5181.2692	0.0052	0.9994
SYMG	17	-2537.3217	5186.3721	0.0004	0.9998
SYMI	17	-2538.3663	5188.4614	0.0001	0.9999
GTRG	20	-2529.7575	5190.9607	0.0000	1.0000
GTRI	20	-2530.7068	5192.8592	0.0000	1.0000
SYMIG	18	-2537.3404	5192.9818	0.0000	1.0000
GTRIG	21	-2529.7725	5197.5629	0.0000	1.0000
K2P	12	-2577.1236	5233.1147	0.0000	1.0000
HKY	15	-2569.9204	5238.4250	0.0000	1.0000
SYM	16	-2570.8517	5246.8600	0.0000	1.0000
GTR	19	-2564.1857	5253.2447	0.0000	1.0000
JC69G	12	-2599.1394	5277.1461	0.0000	1.0000
JC69I	12	-2599.5184	5277.9042	0.0000	1.0000
F81G	15	-2590.2945	5279.1732	0.0000	1.0000
F81I	15	-2590.7618	5280.1078	0.0000	1.0000
JC69IG	13	-2599.1437	5283.7270	0.0000	1.0000
F81IG	16	-2590.3341	5285.8247	0.0000	1.0000
JC69	11	-2630.1609	5332.6170	0.0000	1.0000
F81	14	-2622.0849	5336.1818	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_10056.phylip = 1 - 715;
 Partition Dummy = 1:591-tomodel-phylip/chr1_10056.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_10056.phylip = 1 - 715;
 Partition Dummy = 1:591-tomodel-phylip/chr1_10056.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr1_10056.phylip = 1 - 715;
 Partition Dummy = 1:591-tomodel-phylip/chr1_10056.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

