
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:28 04/04/2011

Input data from file "591-tomodel-phylip/chr17_3035.phylip" (7 taxa, 507 characters)

Minimum AIC  model: GTRI
Minimum AICc model: GTRI
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRI	20	-1407.7381	2857.2045	0.3140	0.3140
HKYG	16	-1412.5243	2858.1588	0.1949	0.5089
HKYI	16	-1412.5505	2858.2113	0.1898	0.6987
GTRG	20	-1408.4502	2858.6289	0.1541	0.8528
HKYIG	17	-1412.5378	2860.3272	0.0659	0.9187
GTRIG	21	-1408.4625	2860.8301	0.0512	0.9699
GTR	19	-1411.5861	2862.7328	0.0198	0.9897
HKY	15	-1416.5337	2864.0450	0.0103	1.0000
F81I	15	-1424.0722	2879.1221	0.0000	1.0000
F81G	15	-1425.0122	2881.0019	0.0000	1.0000
F81IG	16	-1425.0150	2883.1402	0.0000	1.0000
F81	14	-1428.2799	2885.4135	0.0000	1.0000
SYMI	17	-1454.0737	2943.3990	0.0000	1.0000
SYMG	17	-1454.4089	2944.0692	0.0000	1.0000
K2PI	13	-1458.9775	2944.6932	0.0000	1.0000
K2PG	13	-1459.3150	2945.3683	0.0000	1.0000
SYMIG	18	-1454.0831	2945.5678	0.0000	1.0000
K2PIG	14	-1458.9872	2946.8281	0.0000	1.0000
SYM	16	-1459.4216	2951.9535	0.0000	1.0000
K2P	12	-1464.0961	2952.8238	0.0000	1.0000
JC69I	12	-1466.7746	2958.1808	0.0000	1.0000
JC69G	12	-1467.0955	2958.8225	0.0000	1.0000
JC69IG	13	-1466.7837	2960.3058	0.0000	1.0000
JC69	11	-1471.7574	2966.0481	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRI	20	-1407.7381	2855.4761	0.3554	0.3554
GTRG	20	-1408.4502	2856.9005	0.1743	0.5297
HKYG	16	-1412.5243	2857.0486	0.1619	0.6916
HKYI	16	-1412.5505	2857.1011	0.1577	0.8493
GTRIG	21	-1408.4625	2858.9249	0.0634	0.9127
HKYIG	17	-1412.5378	2859.0756	0.0588	0.9714
GTR	19	-1411.5861	2861.1722	0.0206	0.9920
HKY	15	-1416.5337	2863.0674	0.0080	1.0000
F81I	15	-1424.0722	2878.1445	0.0000	1.0000
F81G	15	-1425.0122	2880.0243	0.0000	1.0000
F81IG	16	-1425.0150	2882.0300	0.0000	1.0000
F81	14	-1428.2799	2884.5599	0.0000	1.0000
SYMI	17	-1454.0737	2942.1474	0.0000	1.0000
SYMG	17	-1454.4089	2942.8177	0.0000	1.0000
K2PI	13	-1458.9775	2943.9549	0.0000	1.0000
SYMIG	18	-1454.0831	2944.1662	0.0000	1.0000
K2PG	13	-1459.3150	2944.6300	0.0000	1.0000
K2PIG	14	-1458.9872	2945.9745	0.0000	1.0000
SYM	16	-1459.4216	2950.8433	0.0000	1.0000
K2P	12	-1464.0961	2952.1922	0.0000	1.0000
JC69I	12	-1466.7746	2957.5493	0.0000	1.0000
JC69G	12	-1467.0955	2958.1909	0.0000	1.0000
JC69IG	13	-1466.7837	2959.5674	0.0000	1.0000
JC69	11	-1471.7574	2965.5148	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-1412.5243	2924.7048	0.4119	0.4119
HKYI	16	-1412.5505	2924.7573	0.4012	0.8131
HKY	15	-1416.5337	2926.4951	0.1683	0.9814
HKYIG	17	-1412.5378	2930.9603	0.0180	0.9995
GTRI	20	-1407.7381	2940.0464	0.0002	0.9997
GTRG	20	-1408.4502	2941.4707	0.0001	0.9997
GTR	19	-1411.5861	2941.5139	0.0001	0.9998
F81I	15	-1424.0722	2941.5722	0.0001	0.9999
F81G	15	-1425.0122	2943.4520	0.0000	1.0000
F81	14	-1428.2799	2943.7590	0.0000	1.0000
GTRIG	21	-1408.4625	2947.7237	0.0000	1.0000
F81IG	16	-1425.0150	2949.6862	0.0000	1.0000
K2PI	13	-1458.9775	2998.9255	0.0000	1.0000
K2PG	13	-1459.3150	2999.6006	0.0000	1.0000
K2P	12	-1464.0961	3002.9343	0.0000	1.0000
K2PIG	14	-1458.9872	3005.1736	0.0000	1.0000
JC69I	12	-1466.7746	3008.2914	0.0000	1.0000
JC69G	12	-1467.0955	3008.9331	0.0000	1.0000
JC69	11	-1471.7574	3012.0284	0.0000	1.0000
SYMI	17	-1454.0737	3014.0321	0.0000	1.0000
JC69IG	13	-1466.7837	3014.5381	0.0000	1.0000
SYMG	17	-1454.4089	3014.7024	0.0000	1.0000
SYM	16	-1459.4216	3018.4995	0.0000	1.0000
SYMIG	18	-1454.0831	3020.2794	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr17_3035.phylip = 1 - 507;
 Partition Dummy = 1:591-tomodel-phylip/chr17_3035.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best AICc model (GTRI)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr17_3035.phylip = 1 - 507;
 Partition Dummy = 1:591-tomodel-phylip/chr17_3035.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=propinv;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) pinvarpr=Uniform(0.0,1.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr17_3035.phylip = 1 - 507;
 Partition Dummy = 1:591-tomodel-phylip/chr17_3035.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

