
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:27 04/04/2011

Input data from file "591-tomodel-phylip/chr17_3001.phylip" (7 taxa, 1047 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3238.7472	6517.4945	0.4966	0.4966
GTRIG	21	-3238.2869	6518.5737	0.2895	0.7861
GTRI	20	-3239.9107	6519.8213	0.1551	0.9412
HKYG	16	-3245.3976	6522.7951	0.0351	0.9763
HKYIG	17	-3245.3674	6524.7347	0.0133	0.9896
HKYI	16	-3246.6113	6525.2227	0.0104	1.0000
GTR	19	-3297.7942	6633.5885	0.0000	1.0000
F81G	15	-3305.9103	6641.8205	0.0000	1.0000
HKY	15	-3306.3422	6642.6843	0.0000	1.0000
F81I	15	-3306.4113	6642.8225	0.0000	1.0000
F81IG	16	-3306.0021	6644.0043	0.0000	1.0000
SYMG	17	-3316.0783	6666.1565	0.0000	1.0000
SYMI	17	-3316.4827	6666.9654	0.0000	1.0000
SYMIG	18	-3316.2025	6668.4050	0.0000	1.0000
K2PG	13	-3327.3628	6680.7256	0.0000	1.0000
K2PI	13	-3327.9035	6681.8071	0.0000	1.0000
K2PIG	14	-3327.4413	6682.8827	0.0000	1.0000
F81	14	-3360.9841	6749.9682	0.0000	1.0000
JC69G	12	-3377.9799	6779.9598	0.0000	1.0000
JC69I	12	-3378.3925	6780.7851	0.0000	1.0000
JC69IG	13	-3378.0478	6782.0955	0.0000	1.0000
SYM	16	-3375.8249	6783.6497	0.0000	1.0000
K2P	12	-3386.8135	6797.6270	0.0000	1.0000
JC69	11	-3432.9533	6887.9066	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-3245.3976	6602.0541	0.7519	0.7519
HKYI	16	-3246.6113	6604.4816	0.2234	0.9753
HKYIG	17	-3245.3674	6608.9474	0.0240	0.9993
GTRG	20	-3238.7472	6616.5682	0.0005	0.9998
GTRI	20	-3239.9107	6618.8950	0.0002	1.0000
GTRIG	21	-3238.2869	6622.6011	0.0000	1.0000
F81G	15	-3305.9103	6716.1258	0.0000	1.0000
HKY	15	-3306.3422	6716.9896	0.0000	1.0000
F81I	15	-3306.4113	6717.1278	0.0000	1.0000
F81IG	16	-3306.0021	6723.2632	0.0000	1.0000
GTR	19	-3297.7942	6727.7085	0.0000	1.0000
K2PG	13	-3327.3628	6745.1235	0.0000	1.0000
K2PI	13	-3327.9035	6746.2050	0.0000	1.0000
SYMG	17	-3316.0783	6750.3691	0.0000	1.0000
SYMI	17	-3316.4827	6751.1780	0.0000	1.0000
K2PIG	14	-3327.4413	6752.2342	0.0000	1.0000
SYMIG	18	-3316.2025	6757.5713	0.0000	1.0000
F81	14	-3360.9841	6819.3198	0.0000	1.0000
JC69G	12	-3377.9799	6839.4040	0.0000	1.0000
JC69I	12	-3378.3925	6840.2293	0.0000	1.0000
JC69IG	13	-3378.0478	6846.4934	0.0000	1.0000
K2P	12	-3386.8135	6857.0713	0.0000	1.0000
SYM	16	-3375.8249	6862.9087	0.0000	1.0000
JC69	11	-3432.9533	6942.3972	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr17_3001.phylip = 1 - 1047;
 Partition Dummy = 1:591-tomodel-phylip/chr17_3001.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr17_3001.phylip = 1 - 1047;
 Partition Dummy = 1:591-tomodel-phylip/chr17_3001.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr17_3001.phylip = 1 - 1047;
 Partition Dummy = 1:591-tomodel-phylip/chr17_3001.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

