
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:30 04/04/2011

Input data from file "591-tomodel-phylip/chr12_5903.phylip" (7 taxa, 991 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3531.3334	7102.6668	0.6989	0.6989
GTRIG	21	-3531.2888	7104.5777	0.2688	0.9678
HKYG	16	-3538.8224	7109.6448	0.0213	0.9891
HKYIG	17	-3538.7846	7111.5692	0.0082	0.9973
GTRI	20	-3537.4364	7114.8728	0.0016	0.9988
SYMG	17	-3541.6622	7117.3244	0.0005	0.9993
K2PG	13	-3546.1137	7118.2274	0.0003	0.9996
HKYI	16	-3543.3306	7118.6613	0.0002	0.9998
SYMIG	18	-3542.1444	7120.2887	0.0001	0.9999
K2PIG	14	-3546.5572	7121.1145	0.0001	1.0000
SYMI	17	-3546.4652	7126.9303	0.0000	1.0000
K2PI	13	-3550.8785	7127.7569	0.0000	1.0000
GTR	19	-3572.7885	7183.5769	0.0000	1.0000
HKY	15	-3579.2456	7188.4911	0.0000	1.0000
K2P	12	-3585.9670	7195.9341	0.0000	1.0000
SYM	16	-3582.2544	7196.5088	0.0000	1.0000
F81G	15	-3621.7992	7273.5985	0.0000	1.0000
F81IG	16	-3621.7996	7275.5991	0.0000	1.0000
JC69G	12	-3628.4673	7280.9346	0.0000	1.0000
F81I	15	-3625.5093	7281.0186	0.0000	1.0000
JC69IG	13	-3628.4707	7282.9415	0.0000	1.0000
JC69I	12	-3632.1747	7288.3495	0.0000	1.0000
F81	14	-3656.7168	7341.4335	0.0000	1.0000
JC69	11	-3663.7463	7349.4926	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-3546.1137	7181.9106	0.9275	0.9275
HKYG	16	-3538.8224	7188.0243	0.0436	0.9711
K2PIG	14	-3546.5572	7189.6965	0.0189	0.9900
K2PI	13	-3550.8785	7191.4402	0.0079	0.9979
HKYIG	17	-3538.7846	7194.8473	0.0014	0.9994
HKYI	16	-3543.3306	7197.0407	0.0005	0.9998
SYMG	17	-3541.6622	7200.6025	0.0001	0.9999
GTRG	20	-3531.3334	7200.6411	0.0001	1.0000
GTRIG	21	-3531.2888	7207.4507	0.0000	1.0000
SYMIG	18	-3542.1444	7208.4656	0.0000	1.0000
SYMI	17	-3546.4652	7210.2085	0.0000	1.0000
GTRI	20	-3537.4364	7212.8471	0.0000	1.0000
K2P	12	-3585.9670	7254.7186	0.0000	1.0000
HKY	15	-3579.2456	7261.9719	0.0000	1.0000
SYM	16	-3582.2544	7274.8882	0.0000	1.0000
GTR	19	-3572.7885	7276.6525	0.0000	1.0000
JC69G	12	-3628.4673	7339.7192	0.0000	1.0000
JC69IG	13	-3628.4707	7346.6248	0.0000	1.0000
F81G	15	-3621.7992	7347.0792	0.0000	1.0000
JC69I	12	-3632.1747	7347.1341	0.0000	1.0000
F81IG	16	-3621.7996	7353.9786	0.0000	1.0000
F81I	15	-3625.5093	7354.4993	0.0000	1.0000
JC69	11	-3663.7463	7403.3784	0.0000	1.0000
F81	14	-3656.7168	7410.0155	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr12_5903.phylip = 1 - 991;
 Partition Dummy = 1:591-tomodel-phylip/chr12_5903.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr12_5903.phylip = 1 - 991;
 Partition Dummy = 1:591-tomodel-phylip/chr12_5903.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr12_5903.phylip = 1 - 991;
 Partition Dummy = 1:591-tomodel-phylip/chr12_5903.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

