
Output from mraic.pl version 1.4.4 by Johan Nylander
-------------------------------------------------------------
21:30 04/04/2011

Input data from file "591-tomodel-phylip/chr12_5895.phylip" (7 taxa, 895 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2685.9862	5411.9723	0.6157	0.6157
GTRIG	21	-2685.6812	5413.3624	0.3073	0.9229
GTRI	20	-2688.1459	5416.2918	0.0710	0.9939
HKYG	16	-2695.1091	5422.2183	0.0037	0.9976
HKYIG	17	-2694.7566	5423.5132	0.0019	0.9995
HKYI	16	-2697.1659	5426.3318	0.0005	1.0000
SYMI	17	-2718.7265	5471.4531	0.0000	1.0000
SYMG	17	-2718.8506	5471.7011	0.0000	1.0000
SYMIG	18	-2718.8864	5473.7727	0.0000	1.0000
GTR	19	-2719.0079	5476.0157	0.0000	1.0000
K2PI	13	-2726.1358	5478.2715	0.0000	1.0000
K2PG	13	-2726.1696	5478.3392	0.0000	1.0000
K2PIG	14	-2726.2185	5480.4370	0.0000	1.0000
HKY	15	-2726.8768	5483.7536	0.0000	1.0000
SYM	16	-2748.8562	5529.7123	0.0000	1.0000
K2P	12	-2756.3441	5536.6882	0.0000	1.0000
F81G	15	-2754.3267	5538.6534	0.0000	1.0000
F81I	15	-2754.3270	5538.6540	0.0000	1.0000
F81IG	16	-2754.3270	5540.6541	0.0000	1.0000
JC69G	12	-2781.4750	5586.9501	0.0000	1.0000
JC69I	12	-2781.4838	5586.9677	0.0000	1.0000
JC69IG	13	-2781.4711	5588.9422	0.0000	1.0000
F81	14	-2782.2561	5592.5121	0.0000	1.0000
JC69	11	-2809.1934	5640.3868	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2695.1091	5498.9674	0.8413	0.8413
HKYI	16	-2697.1659	5503.0810	0.1076	0.9488
HKYIG	17	-2694.7566	5505.0592	0.0400	0.9888
GTRG	20	-2685.9862	5507.9088	0.0096	0.9985
GTRI	20	-2688.1459	5512.2283	0.0011	0.9996
GTRIG	21	-2685.6812	5514.0957	0.0004	1.0000
K2PI	13	-2726.1358	5540.6302	0.0000	1.0000
K2PG	13	-2726.1696	5540.6979	0.0000	1.0000
K2PIG	14	-2726.2185	5547.5926	0.0000	1.0000
SYMI	17	-2718.7265	5552.9991	0.0000	1.0000
SYMG	17	-2718.8506	5553.2471	0.0000	1.0000
HKY	15	-2726.8768	5555.7060	0.0000	1.0000
SYMIG	18	-2718.8864	5560.1156	0.0000	1.0000
GTR	19	-2719.0079	5567.1554	0.0000	1.0000
K2P	12	-2756.3441	5594.2501	0.0000	1.0000
SYM	16	-2748.8562	5606.4615	0.0000	1.0000
F81G	15	-2754.3267	5610.6058	0.0000	1.0000
F81I	15	-2754.3270	5610.6063	0.0000	1.0000
F81IG	16	-2754.3270	5617.4032	0.0000	1.0000
JC69G	12	-2781.4750	5644.5120	0.0000	1.0000
JC69I	12	-2781.4838	5644.5296	0.0000	1.0000
JC69IG	13	-2781.4711	5651.3009	0.0000	1.0000
F81	14	-2782.2561	5659.6677	0.0000	1.0000
JC69	11	-2809.1934	5693.1519	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr12_5895.phylip = 1 - 895;
 Partition Dummy = 1:591-tomodel-phylip/chr12_5895.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr12_5895.phylip = 1 - 895;
 Partition Dummy = 1:591-tomodel-phylip/chr12_5895.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr12_5895.phylip = 1 - 895;
 Partition Dummy = 1:591-tomodel-phylip/chr12_5895.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


-------------------------------------------------------------
End of Output

