
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:28 04/04/2011

Input data from file "591-tomodel-phylip/chr12_5828.phylip" (7 taxa, 664 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2288.5066	4618.3196	0.5125	0.5125
GTRI	20	-2289.0174	4619.3412	0.3075	0.8200
GTRIG	21	-2288.4946	4620.4285	0.1786	0.9986
HKYG	16	-2299.5086	4631.8580	0.0006	0.9992
HKYI	16	-2300.2854	4633.4115	0.0003	0.9994
HKYIG	17	-2299.5132	4633.9737	0.0002	0.9996
SYMG	17	-2299.6952	4634.3377	0.0002	0.9998
SYMI	17	-2300.1346	4635.2165	0.0001	0.9999
SYMIG	18	-2299.6878	4636.4360	0.0001	1.0000
K2PG	13	-2306.7802	4640.1205	0.0000	1.0000
K2PI	13	-2307.4766	4641.5132	0.0000	1.0000
K2PIG	14	-2306.7898	4642.2267	0.0000	1.0000
GTR	19	-2303.4367	4646.0536	0.0000	1.0000
HKY	15	-2314.4725	4659.6857	0.0000	1.0000
SYM	16	-2314.4396	4661.7200	0.0000	1.0000
K2P	12	-2322.0828	4668.6449	0.0000	1.0000
F81G	15	-2333.8699	4698.4806	0.0000	1.0000
F81I	15	-2334.3981	4699.5369	0.0000	1.0000
F81IG	16	-2333.8776	4700.5961	0.0000	1.0000
JC69G	12	-2340.7677	4706.0147	0.0000	1.0000
JC69I	12	-2341.2628	4707.0048	0.0000	1.0000
JC69IG	13	-2340.7748	4708.1097	0.0000	1.0000
F81	14	-2347.4302	4723.5076	0.0000	1.0000
JC69	11	-2354.6758	4731.7564	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2288.5066	4617.0132	0.5064	0.5064
GTRI	20	-2289.0174	4618.0348	0.3039	0.8103
GTRIG	21	-2288.4946	4618.9892	0.1886	0.9989
HKYG	16	-2299.5086	4631.0172	0.0005	0.9993
HKYI	16	-2300.2854	4632.5707	0.0002	0.9995
HKYIG	17	-2299.5132	4633.0264	0.0002	0.9997
SYMG	17	-2299.6952	4633.3903	0.0001	0.9998
SYMI	17	-2300.1346	4634.2691	0.0001	0.9999
SYMIG	18	-2299.6878	4635.3756	0.0001	1.0000
K2PG	13	-2306.7802	4639.5605	0.0000	1.0000
K2PI	13	-2307.4766	4640.9532	0.0000	1.0000
K2PIG	14	-2306.7898	4641.5795	0.0000	1.0000
GTR	19	-2303.4367	4644.8734	0.0000	1.0000
HKY	15	-2314.4725	4658.9450	0.0000	1.0000
SYM	16	-2314.4396	4660.8792	0.0000	1.0000
K2P	12	-2322.0828	4668.1656	0.0000	1.0000
F81G	15	-2333.8699	4697.7399	0.0000	1.0000
F81I	15	-2334.3981	4698.7962	0.0000	1.0000
F81IG	16	-2333.8776	4699.7553	0.0000	1.0000
JC69G	12	-2340.7677	4705.5354	0.0000	1.0000
JC69I	12	-2341.2628	4706.5255	0.0000	1.0000
JC69IG	13	-2340.7748	4707.5497	0.0000	1.0000
F81	14	-2347.4302	4722.8605	0.0000	1.0000
JC69	11	-2354.6758	4731.3515	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-2306.7802	4698.0381	0.5931	0.5931
K2PI	13	-2307.4766	4699.4309	0.2956	0.8886
HKYG	16	-2299.5086	4702.9898	0.0499	0.9385
HKYI	16	-2300.2854	4704.5432	0.0229	0.9614
K2PIG	14	-2306.7898	4704.5555	0.0228	0.9842
GTRG	20	-2288.5066	4706.9788	0.0068	0.9910
GTRI	20	-2289.0174	4708.0004	0.0041	0.9951
HKYIG	17	-2299.5132	4709.4972	0.0019	0.9970
SYMG	17	-2299.6952	4709.8611	0.0016	0.9986
SYMI	17	-2300.1346	4710.7399	0.0010	0.9997
GTRIG	21	-2288.4946	4713.4531	0.0003	0.9999
SYMIG	18	-2299.6878	4716.3447	0.0001	1.0000
K2P	12	-2322.0828	4722.1450	0.0000	1.0000
HKY	15	-2314.4725	4726.4192	0.0000	1.0000
GTR	19	-2303.4367	4730.3408	0.0000	1.0000
SYM	16	-2314.4396	4732.8517	0.0000	1.0000
JC69G	12	-2340.7677	4759.5148	0.0000	1.0000
JC69I	12	-2341.2628	4760.5049	0.0000	1.0000
F81G	15	-2333.8699	4765.2141	0.0000	1.0000
JC69IG	13	-2340.7748	4766.0273	0.0000	1.0000
F81I	15	-2334.3981	4766.2704	0.0000	1.0000
F81IG	16	-2333.8776	4771.7278	0.0000	1.0000
JC69	11	-2354.6758	4780.8326	0.0000	1.0000
F81	14	-2347.4302	4785.8364	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr12_5828.phylip = 1 - 664;
 Partition Dummy = 1:591-tomodel-phylip/chr12_5828.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr12_5828.phylip = 1 - 664;
 Partition Dummy = 1:591-tomodel-phylip/chr12_5828.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr12_5828.phylip = 1 - 664;
 Partition Dummy = 1:591-tomodel-phylip/chr12_5828.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

