
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:26 04/04/2011

Input data from file "591-tomodel-phylip/chr11_6387.phylip" (7 taxa, 849 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2777.7089	5595.4178	0.5384	0.5384
GTRIG	21	-2777.7092	5597.4185	0.1980	0.7364
HKYG	16	-2783.1064	5598.2127	0.1331	0.8695
HKYIG	17	-2783.1063	5600.2127	0.0490	0.9185
GTRI	20	-2780.1164	5600.2328	0.0485	0.9669
HKYI	16	-2784.4992	5600.9985	0.0331	1.0000
GTR	19	-2793.1839	5624.3677	0.0000	1.0000
K2PG	13	-2800.2981	5626.5963	0.0000	1.0000
HKY	15	-2798.9139	5627.8278	0.0000	1.0000
K2PIG	14	-2800.2982	5628.5963	0.0000	1.0000
K2PI	13	-2801.4986	5628.9972	0.0000	1.0000
SYMG	17	-2798.4203	5630.8406	0.0000	1.0000
SYMIG	18	-2798.4315	5632.8630	0.0000	1.0000
SYMI	17	-2799.8951	5633.7902	0.0000	1.0000
K2P	12	-2816.5494	5657.0987	0.0000	1.0000
SYM	16	-2812.7177	5657.4355	0.0000	1.0000
F81G	15	-2834.1489	5698.2978	0.0000	1.0000
F81I	15	-2834.5586	5699.1172	0.0000	1.0000
F81IG	16	-2834.1537	5700.3073	0.0000	1.0000
F81	14	-2845.5838	5719.1676	0.0000	1.0000
JC69G	12	-2847.9833	5719.9667	0.0000	1.0000
JC69I	12	-2848.3230	5720.6460	0.0000	1.0000
JC69IG	13	-2847.9822	5721.9644	0.0000	1.0000
JC69	11	-2859.4451	5740.8902	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2783.1064	5674.1177	0.7787	0.7787
HKYI	16	-2784.4992	5676.9034	0.1934	0.9721
HKYIG	17	-2783.1063	5680.8617	0.0267	0.9988
K2PG	13	-2800.2981	5688.2690	0.0007	0.9995
GTRG	20	-2777.7089	5690.2989	0.0002	0.9997
K2PI	13	-2801.4986	5690.6699	0.0002	0.9999
K2PIG	14	-2800.2982	5695.0131	0.0000	1.0000
GTRI	20	-2780.1164	5695.1140	0.0000	1.0000
GTRIG	21	-2777.7092	5697.0437	0.0000	1.0000
HKY	15	-2798.9139	5698.9887	0.0000	1.0000
SYMG	17	-2798.4203	5711.4896	0.0000	1.0000
K2P	12	-2816.5494	5714.0275	0.0000	1.0000
SYMI	17	-2799.8951	5714.4392	0.0000	1.0000
GTR	19	-2793.1839	5714.5049	0.0000	1.0000
SYMIG	18	-2798.4315	5718.2560	0.0000	1.0000
SYM	16	-2812.7177	5733.3404	0.0000	1.0000
F81G	15	-2834.1489	5769.4587	0.0000	1.0000
F81I	15	-2834.5586	5770.2780	0.0000	1.0000
F81IG	16	-2834.1537	5776.2123	0.0000	1.0000
JC69G	12	-2847.9833	5776.8954	0.0000	1.0000
JC69I	12	-2848.3230	5777.5747	0.0000	1.0000
JC69IG	13	-2847.9822	5783.6371	0.0000	1.0000
F81	14	-2845.5838	5785.5844	0.0000	1.0000
JC69	11	-2859.4451	5793.0749	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_6387.phylip = 1 - 849;
 Partition Dummy = 1:591-tomodel-phylip/chr11_6387.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_6387.phylip = 1 - 849;
 Partition Dummy = 1:591-tomodel-phylip/chr11_6387.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_6387.phylip = 1 - 849;
 Partition Dummy = 1:591-tomodel-phylip/chr11_6387.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

