
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:26 04/04/2011

Input data from file "591-tomodel-phylip/chr11_4808.phylip" (7 taxa, 627 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2127.0447	4295.4756	0.5378	0.5378
GTRIG	21	-2127.0446	4297.6165	0.1844	0.7222
HKYG	16	-2132.5516	4297.9949	0.1526	0.8748
HKYIG	17	-2132.5514	4300.1077	0.0531	0.9278
GTRI	20	-2129.3895	4300.1652	0.0516	0.9794
HKYI	16	-2134.5524	4301.9966	0.0206	1.0000
SYMG	17	-2155.9503	4346.9056	0.0000	1.0000
SYMIG	18	-2155.9503	4349.0255	0.0000	1.0000
SYMI	17	-2157.5640	4350.1328	0.0000	1.0000
GTR	19	-2155.5284	4350.3089	0.0000	1.0000
K2PG	13	-2162.4788	4351.5514	0.0000	1.0000
K2PIG	14	-2162.4787	4353.6437	0.0000	1.0000
HKY	15	-2161.8801	4354.5459	0.0000	1.0000
K2PI	13	-2164.1932	4354.9802	0.0000	1.0000
F81G	15	-2179.7069	4390.1995	0.0000	1.0000
F81IG	16	-2179.7069	4392.3056	0.0000	1.0000
F81I	15	-2181.4869	4393.7593	0.0000	1.0000
SYM	16	-2185.1093	4403.1104	0.0000	1.0000
K2P	12	-2192.5644	4409.6369	0.0000	1.0000
F81	14	-2208.1382	4444.9627	0.0000	1.0000
JC69G	12	-2212.5132	4449.5346	0.0000	1.0000
JC69IG	13	-2212.5132	4451.6203	0.0000	1.0000
JC69I	12	-2213.6810	4451.8701	0.0000	1.0000
JC69	11	-2239.6605	4501.7503	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2127.0447	4294.0895	0.5565	0.5565
GTRIG	21	-2127.0446	4296.0892	0.2048	0.7613
HKYG	16	-2132.5516	4297.1031	0.1233	0.8846
GTRI	20	-2129.3895	4298.7791	0.0534	0.9379
HKYIG	17	-2132.5514	4299.1028	0.0454	0.9833
HKYI	16	-2134.5524	4301.1048	0.0167	1.0000
SYMG	17	-2155.9503	4345.9007	0.0000	1.0000
SYMIG	18	-2155.9503	4347.9005	0.0000	1.0000
GTR	19	-2155.5284	4349.0569	0.0000	1.0000
SYMI	17	-2157.5640	4349.1279	0.0000	1.0000
K2PG	13	-2162.4788	4350.9576	0.0000	1.0000
K2PIG	14	-2162.4787	4352.9574	0.0000	1.0000
HKY	15	-2161.8801	4353.7603	0.0000	1.0000
K2PI	13	-2164.1932	4354.3864	0.0000	1.0000
F81G	15	-2179.7069	4389.4139	0.0000	1.0000
F81IG	16	-2179.7069	4391.4138	0.0000	1.0000
F81I	15	-2181.4869	4392.9737	0.0000	1.0000
SYM	16	-2185.1093	4402.2186	0.0000	1.0000
K2P	12	-2192.5644	4409.1288	0.0000	1.0000
F81	14	-2208.1382	4444.2765	0.0000	1.0000
JC69G	12	-2212.5132	4449.0265	0.0000	1.0000
JC69IG	13	-2212.5132	4451.0265	0.0000	1.0000
JC69I	12	-2213.6810	4451.3620	0.0000	1.0000
JC69	11	-2239.6605	4501.3211	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2132.5516	4368.1583	0.8504	0.8504
HKYI	16	-2134.5524	4372.1599	0.1150	0.9654
HKYIG	17	-2132.5514	4374.5989	0.0340	0.9994
GTRG	20	-2127.0447	4382.9084	0.0005	0.9999
GTRI	20	-2129.3895	4387.5980	0.0001	1.0000
GTRIG	21	-2127.0446	4389.3491	0.0000	1.0000
K2PG	13	-2162.4788	4408.6899	0.0000	1.0000
K2PI	13	-2164.1932	4412.1187	0.0000	1.0000
K2PIG	14	-2162.4787	4415.1307	0.0000	1.0000
HKY	15	-2161.8801	4420.3745	0.0000	1.0000
SYMG	17	-2155.9503	4421.3968	0.0000	1.0000
SYMI	17	-2157.5640	4424.6240	0.0000	1.0000
SYMIG	18	-2155.9503	4427.8376	0.0000	1.0000
GTR	19	-2155.5284	4433.4349	0.0000	1.0000
F81G	15	-2179.7069	4456.0281	0.0000	1.0000
F81I	15	-2181.4869	4459.5879	0.0000	1.0000
K2P	12	-2192.5644	4462.4202	0.0000	1.0000
F81IG	16	-2179.7069	4462.4689	0.0000	1.0000
SYM	16	-2185.1093	4473.2737	0.0000	1.0000
JC69G	12	-2212.5132	4502.3178	0.0000	1.0000
JC69I	12	-2213.6810	4504.6533	0.0000	1.0000
F81	14	-2208.1382	4506.4497	0.0000	1.0000
JC69IG	13	-2212.5132	4508.7588	0.0000	1.0000
JC69	11	-2239.6605	4550.1715	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_4808.phylip = 1 - 627;
 Partition Dummy = 1:591-tomodel-phylip/chr11_4808.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_4808.phylip = 1 - 627;
 Partition Dummy = 1:591-tomodel-phylip/chr11_4808.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_4808.phylip = 1 - 627;
 Partition Dummy = 1:591-tomodel-phylip/chr11_4808.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

