
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:25 04/04/2011

Input data from file "591-tomodel-phylip/chr11_4735.phylip" (7 taxa, 928 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2888.5314	5817.0628	0.6953	0.6953
GTRIG	21	-2888.5314	5819.0629	0.2558	0.9510
GTRI	20	-2891.2990	5822.5981	0.0437	0.9947
HKYG	16	-2897.7661	5827.5322	0.0037	0.9984
HKYIG	17	-2897.7661	5829.5322	0.0014	0.9998
HKYI	16	-2900.4817	5832.9635	0.0002	1.0000
GTR	19	-2901.8320	5841.6641	0.0000	1.0000
HKY	15	-2909.1680	5848.3359	0.0000	1.0000
K2PG	13	-2929.2822	5884.5645	0.0000	1.0000
SYMG	17	-2926.1425	5886.2850	0.0000	1.0000
K2PIG	14	-2929.2823	5886.5645	0.0000	1.0000
SYMIG	18	-2926.1426	5888.2851	0.0000	1.0000
K2PI	13	-2931.8427	5889.6853	0.0000	1.0000
SYMI	17	-2928.7333	5891.4665	0.0000	1.0000
K2P	12	-2941.2874	5906.5748	0.0000	1.0000
SYM	16	-2937.9818	5907.9635	0.0000	1.0000
F81G	15	-2952.1610	5934.3220	0.0000	1.0000
F81IG	16	-2952.5586	5937.1172	0.0000	1.0000
F81I	15	-2953.7683	5937.5365	0.0000	1.0000
F81	14	-2961.2505	5950.5009	0.0000	1.0000
JC69G	12	-2978.1480	5980.2961	0.0000	1.0000
JC69IG	13	-2978.1481	5982.2961	0.0000	1.0000
JC69I	12	-2979.7391	5983.4782	0.0000	1.0000
JC69	11	-2987.7811	5997.5623	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2897.7661	5904.8607	0.8990	0.8990
HKYI	16	-2900.4817	5910.2920	0.0595	0.9585
HKYIG	17	-2897.7661	5911.6938	0.0295	0.9880
GTRG	20	-2888.5314	5913.7235	0.0107	0.9987
GTRI	20	-2891.2990	5919.2587	0.0007	0.9993
GTRIG	21	-2888.5314	5920.5566	0.0004	0.9997
HKY	15	-2909.1680	5920.8314	0.0003	1.0000
GTR	19	-2901.8320	5933.4917	0.0000	1.0000
K2PG	13	-2929.2822	5947.3939	0.0000	1.0000
K2PI	13	-2931.8427	5952.5147	0.0000	1.0000
K2PIG	14	-2929.2823	5954.2270	0.0000	1.0000
K2P	12	-2941.2874	5964.5712	0.0000	1.0000
SYMG	17	-2926.1425	5968.4466	0.0000	1.0000
SYMI	17	-2928.7333	5973.6281	0.0000	1.0000
SYMIG	18	-2926.1426	5975.2797	0.0000	1.0000
SYM	16	-2937.9818	5985.2920	0.0000	1.0000
F81G	15	-2952.1610	6006.8175	0.0000	1.0000
F81I	15	-2953.7683	6010.0320	0.0000	1.0000
F81IG	16	-2952.5586	6014.4457	0.0000	1.0000
F81	14	-2961.2505	6018.1633	0.0000	1.0000
JC69G	12	-2978.1480	6038.2924	0.0000	1.0000
JC69I	12	-2979.7391	6041.4746	0.0000	1.0000
JC69IG	13	-2978.1481	6045.1256	0.0000	1.0000
JC69	11	-2987.7811	6050.7256	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_4735.phylip = 1 - 928;
 Partition Dummy = 1:591-tomodel-phylip/chr11_4735.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_4735.phylip = 1 - 928;
 Partition Dummy = 1:591-tomodel-phylip/chr11_4735.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_4735.phylip = 1 - 928;
 Partition Dummy = 1:591-tomodel-phylip/chr11_4735.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

