
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:29 04/04/2011

Input data from file "591-tomodel-phylip/chr11_3350.phylip" (7 taxa, 693 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-2146.5632	4334.3764	0.5065	0.5065
GTRI	20	-2147.0267	4335.3035	0.3186	0.8250
GTRIG	21	-2146.5648	4336.5067	0.1746	0.9996
HKYG	16	-2158.5609	4349.9265	0.0002	0.9998
HKYI	16	-2159.0698	4350.9444	0.0001	0.9999
HKYIG	17	-2158.5696	4352.0459	0.0001	1.0000
SYMG	17	-2162.2318	4359.3703	0.0000	1.0000
SYMI	17	-2162.3974	4359.7015	0.0000	1.0000
SYMIG	18	-2162.2318	4361.4785	0.0000	1.0000
K2PG	13	-2169.4875	4365.5111	0.0000	1.0000
K2PI	13	-2169.8394	4366.2150	0.0000	1.0000
K2PIG	14	-2169.4995	4367.6185	0.0000	1.0000
GTR	19	-2175.1173	4389.3638	0.0000	1.0000
HKY	15	-2188.4526	4407.6143	0.0000	1.0000
SYM	16	-2190.3841	4413.5730	0.0000	1.0000
F81G	15	-2192.2169	4415.1427	0.0000	1.0000
F81I	15	-2192.7030	4416.1149	0.0000	1.0000
F81IG	16	-2192.2281	4417.2608	0.0000	1.0000
K2P	12	-2199.5978	4423.6543	0.0000	1.0000
JC69G	12	-2201.0649	4426.5886	0.0000	1.0000
JC69I	12	-2201.4533	4427.3655	0.0000	1.0000
JC69IG	13	-2201.1279	4428.7918	0.0000	1.0000
F81	14	-2220.6817	4469.9828	0.0000	1.0000
JC69	11	-2229.8670	4482.1216	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2146.5632	4333.1264	0.5008	0.5008
GTRI	20	-2147.0267	4334.0535	0.3150	0.8158
GTRIG	21	-2146.5648	4335.1297	0.1839	0.9997
HKYG	16	-2158.5609	4349.1218	0.0002	0.9998
HKYI	16	-2159.0698	4350.1396	0.0001	0.9999
HKYIG	17	-2158.5696	4351.1392	0.0001	1.0000
SYMG	17	-2162.2318	4358.4636	0.0000	1.0000
SYMI	17	-2162.3974	4358.7949	0.0000	1.0000
SYMIG	18	-2162.2318	4360.4636	0.0000	1.0000
K2PG	13	-2169.4875	4364.9750	0.0000	1.0000
K2PI	13	-2169.8394	4365.6789	0.0000	1.0000
K2PIG	14	-2169.4995	4366.9990	0.0000	1.0000
GTR	19	-2175.1173	4388.2345	0.0000	1.0000
HKY	15	-2188.4526	4406.9053	0.0000	1.0000
SYM	16	-2190.3841	4412.7683	0.0000	1.0000
F81G	15	-2192.2169	4414.4337	0.0000	1.0000
F81I	15	-2192.7030	4415.4059	0.0000	1.0000
F81IG	16	-2192.2281	4416.4561	0.0000	1.0000
K2P	12	-2199.5978	4423.1955	0.0000	1.0000
JC69G	12	-2201.0649	4426.1297	0.0000	1.0000
JC69I	12	-2201.4533	4426.9067	0.0000	1.0000
JC69IG	13	-2201.1279	4428.2558	0.0000	1.0000
F81	14	-2220.6817	4469.3633	0.0000	1.0000
JC69	11	-2229.8670	4481.7339	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2158.5609	4421.7783	0.3603	0.3603
HKYI	16	-2159.0698	4422.7961	0.2166	0.5770
GTRG	20	-2146.5632	4423.9470	0.1218	0.6988
K2PG	13	-2169.4875	4424.0084	0.1182	0.8170
K2PI	13	-2169.8394	4424.7123	0.0831	0.9001
GTRI	20	-2147.0267	4424.8741	0.0766	0.9767
HKYIG	17	-2158.5696	4428.3367	0.0136	0.9903
GTRIG	21	-2146.5648	4430.4913	0.0046	0.9949
K2PIG	14	-2169.4995	4430.5734	0.0044	0.9993
SYMG	17	-2162.2318	4435.6611	0.0003	0.9997
SYMI	17	-2162.3974	4435.9924	0.0003	1.0000
SYMIG	18	-2162.2318	4442.2022	0.0000	1.0000
GTR	19	-2175.1173	4474.5141	0.0000	1.0000
HKY	15	-2188.4526	4475.0207	0.0000	1.0000
K2P	12	-2199.5978	4477.6879	0.0000	1.0000
JC69G	12	-2201.0649	4480.6221	0.0000	1.0000
JC69I	12	-2201.4533	4481.3990	0.0000	1.0000
F81G	15	-2192.2169	4482.5492	0.0000	1.0000
F81I	15	-2192.7030	4483.5214	0.0000	1.0000
SYM	16	-2190.3841	4485.4248	0.0000	1.0000
JC69IG	13	-2201.1279	4487.2891	0.0000	1.0000
F81IG	16	-2192.2281	4489.1126	0.0000	1.0000
JC69	11	-2229.8670	4531.6852	0.0000	1.0000
F81	14	-2220.6817	4532.9377	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_3350.phylip = 1 - 693;
 Partition Dummy = 1:591-tomodel-phylip/chr11_3350.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_3350.phylip = 1 - 693;
 Partition Dummy = 1:591-tomodel-phylip/chr11_3350.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_3350.phylip = 1 - 693;
 Partition Dummy = 1:591-tomodel-phylip/chr11_3350.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

