
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:28 04/04/2011

Input data from file "591-tomodel-phylip/chr11_3250.phylip" (7 taxa, 588 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: K2PG


Note: number of parameters compared to sample size
is low (Nchar/Nparams < 40). Consider the use of AICc.


(Output sorted by AICc. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AICc		wAICc	cwAICc
GTRG	20	-1771.8941	3585.2697	0.6193	0.6193
GTRIG	21	-1771.6173	3586.8672	0.2786	0.8979
GTRI	20	-1773.7662	3589.0140	0.0952	0.9932
HKYG	16	-1781.2936	3595.5398	0.0036	0.9968
HKYIG	17	-1781.0563	3597.1863	0.0016	0.9984
HKYI	16	-1782.2624	3597.4774	0.0014	0.9998
SYMG	17	-1783.9500	3602.9737	0.0001	0.9999
SYMIG	18	-1783.7028	3604.6078	0.0000	0.9999
K2PG	13	-1789.4702	3605.5744	0.0000	1.0000
SYMI	17	-1785.3687	3605.8111	0.0000	1.0000
K2PIG	14	-1789.2514	3607.2358	0.0000	1.0000
K2PI	13	-1790.4273	3607.4887	0.0000	1.0000
GTR	19	-1799.5107	3638.3594	0.0000	1.0000
HKY	15	-1810.4359	3651.7109	0.0000	1.0000
F81G	15	-1812.0640	3654.9673	0.0000	1.0000
F81I	15	-1812.8721	3656.5834	0.0000	1.0000
F81IG	16	-1811.9474	3656.8476	0.0000	1.0000
SYM	16	-1812.2199	3657.3925	0.0000	1.0000
K2P	12	-1818.9667	3662.4761	0.0000	1.0000
JC69G	12	-1819.2863	3663.1152	0.0000	1.0000
JC69I	12	-1820.0374	3664.6175	0.0000	1.0000
JC69IG	13	-1819.1813	3664.9967	0.0000	1.0000
F81	14	-1839.4870	3707.7071	0.0000	1.0000
JC69	11	-1847.3113	3717.0809	0.0000	1.0000



(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-1771.8941	3583.7882	0.6070	0.6070
GTRIG	21	-1771.6173	3585.2347	0.2945	0.9014
GTRI	20	-1773.7662	3587.5325	0.0933	0.9948
HKYG	16	-1781.2936	3594.5871	0.0027	0.9975
HKYIG	17	-1781.0563	3596.1126	0.0013	0.9988
HKYI	16	-1782.2624	3596.5247	0.0010	0.9999
SYMG	17	-1783.9500	3601.9001	0.0001	0.9999
SYMIG	18	-1783.7028	3603.4057	0.0000	1.0000
SYMI	17	-1785.3687	3604.7374	0.0000	1.0000
K2PG	13	-1789.4702	3604.9403	0.0000	1.0000
K2PIG	14	-1789.2514	3606.5028	0.0000	1.0000
K2PI	13	-1790.4273	3606.8545	0.0000	1.0000
GTR	19	-1799.5107	3637.0214	0.0000	1.0000
HKY	15	-1810.4359	3650.8718	0.0000	1.0000
F81G	15	-1812.0640	3654.1281	0.0000	1.0000
F81I	15	-1812.8721	3655.7443	0.0000	1.0000
F81IG	16	-1811.9474	3655.8949	0.0000	1.0000
SYM	16	-1812.2199	3656.4398	0.0000	1.0000
K2P	12	-1818.9667	3661.9335	0.0000	1.0000
JC69G	12	-1819.2863	3662.5726	0.0000	1.0000
JC69I	12	-1820.0374	3664.0749	0.0000	1.0000
JC69IG	13	-1819.1813	3664.3625	0.0000	1.0000
F81	14	-1839.4870	3706.9741	0.0000	1.0000
JC69	11	-1847.3113	3716.6226	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
K2PG	13	-1789.4702	3661.8378	0.5543	0.5543
K2PI	13	-1790.4273	3663.7520	0.2129	0.7672
HKYG	16	-1781.2936	3664.6148	0.1383	0.9055
HKYI	16	-1782.2624	3666.5524	0.0525	0.9580
K2PIG	14	-1789.2514	3667.7770	0.0285	0.9864
HKYIG	17	-1781.0563	3670.5170	0.0072	0.9936
GTRG	20	-1771.8941	3671.3227	0.0048	0.9985
GTRI	20	-1773.7662	3675.0670	0.0007	0.9992
SYMG	17	-1783.9500	3676.3044	0.0004	0.9996
GTRIG	21	-1771.6173	3677.1459	0.0003	0.9999
SYMI	17	-1785.3687	3679.1418	0.0001	1.0000
SYMIG	18	-1783.7028	3682.1868	0.0000	1.0000
K2P	12	-1818.9667	3714.4542	0.0000	1.0000
JC69G	12	-1819.2863	3715.0933	0.0000	1.0000
HKY	15	-1810.4359	3716.5227	0.0000	1.0000
JC69I	12	-1820.0374	3716.5956	0.0000	1.0000
F81G	15	-1812.0640	3719.7790	0.0000	1.0000
GTR	19	-1799.5107	3720.1792	0.0000	1.0000
JC69IG	13	-1819.1813	3721.2600	0.0000	1.0000
F81I	15	-1812.8721	3721.3952	0.0000	1.0000
F81IG	16	-1811.9474	3725.9225	0.0000	1.0000
SYM	16	-1812.2199	3726.4675	0.0000	1.0000
JC69	11	-1847.3113	3764.7666	0.0000	1.0000
F81	14	-1839.4870	3768.2483	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_3250.phylip = 1 - 588;
 Partition Dummy = 1:591-tomodel-phylip/chr11_3250.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_3250.phylip = 1 - 588;
 Partition Dummy = 1:591-tomodel-phylip/chr11_3250.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (K2PG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_3250.phylip = 1 - 588;
 Partition Dummy = 1:591-tomodel-phylip/chr11_3250.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Fixed(Equal) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

