
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:28 04/04/2011

Input data from file "591-tomodel-phylip/chr11_3231.phylip" (7 taxa, 1141 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: GTRG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-3808.8259	7657.6518	0.7134	0.7134
GTRIG	21	-3808.7389	7659.4778	0.2863	0.9997
GTRI	20	-3816.5329	7673.0658	0.0003	1.0000
HKYG	16	-3827.0813	7686.1627	0.0000	1.0000
HKYIG	17	-3826.9892	7687.9785	0.0000	1.0000
HKYI	16	-3833.1523	7698.3045	0.0000	1.0000
SYMG	17	-3853.7129	7741.4258	0.0000	1.0000
SYMIG	18	-3853.5833	7743.1665	0.0000	1.0000
GTR	19	-3853.8909	7745.7819	0.0000	1.0000
SYMI	17	-3857.9979	7749.9957	0.0000	1.0000
K2PG	13	-3862.6134	7751.2268	0.0000	1.0000
K2PIG	14	-3862.4986	7752.9972	0.0000	1.0000
K2PI	13	-3866.7862	7759.5723	0.0000	1.0000
HKY	15	-3870.0913	7770.1826	0.0000	1.0000
SYM	16	-3896.0473	7824.0947	0.0000	1.0000
K2P	12	-3905.1590	7834.3181	0.0000	1.0000
F81IG	16	-3920.4804	7872.9608	0.0000	1.0000
F81G	15	-3926.0646	7882.1293	0.0000	1.0000
F81I	15	-3930.5819	7891.1638	0.0000	1.0000
JC69IG	13	-3947.1020	7920.2040	0.0000	1.0000
JC69G	12	-3952.5697	7929.1393	0.0000	1.0000
JC69I	12	-3956.3383	7936.6766	0.0000	1.0000
F81	14	-3968.5438	7965.0876	0.0000	1.0000
JC69	11	-3995.1621	8012.3242	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
GTRG	20	-3808.8259	7758.4450	0.9536	0.9536
GTRIG	21	-3808.7389	7765.3106	0.0308	0.9844
HKYG	16	-3827.0813	7766.7972	0.0146	0.9991
HKYIG	17	-3826.9892	7773.6527	0.0005	0.9995
GTRI	20	-3816.5329	7773.8590	0.0004	1.0000
HKYI	16	-3833.1523	7778.9391	0.0000	1.0000
K2PG	13	-3862.6134	7816.7424	0.0000	1.0000
K2PIG	14	-3862.4986	7823.5524	0.0000	1.0000
K2PI	13	-3866.7862	7825.0879	0.0000	1.0000
SYMG	17	-3853.7129	7827.1000	0.0000	1.0000
SYMIG	18	-3853.5833	7833.8804	0.0000	1.0000
SYMI	17	-3857.9979	7835.6699	0.0000	1.0000
GTR	19	-3853.8909	7841.5354	0.0000	1.0000
HKY	15	-3870.0913	7845.7775	0.0000	1.0000
K2P	12	-3905.1590	7894.7940	0.0000	1.0000
SYM	16	-3896.0473	7904.7292	0.0000	1.0000
F81IG	16	-3920.4804	7953.5953	0.0000	1.0000
F81G	15	-3926.0646	7957.7242	0.0000	1.0000
F81I	15	-3930.5819	7966.7587	0.0000	1.0000
JC69IG	13	-3947.1020	7985.7195	0.0000	1.0000
JC69G	12	-3952.5697	7989.6152	0.0000	1.0000
JC69I	12	-3956.3383	7997.1526	0.0000	1.0000
F81	14	-3968.5438	8035.6428	0.0000	1.0000
JC69	11	-3995.1621	8067.7605	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_3231.phylip = 1 - 1141;
 Partition Dummy = 1:591-tomodel-phylip/chr11_3231.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_3231.phylip = 1 - 1141;
 Partition Dummy = 1:591-tomodel-phylip/chr11_3231.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_3231.phylip = 1 - 1141;
 Partition Dummy = 1:591-tomodel-phylip/chr11_3231.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

