
Output from mraic.pl version 1.4.4 by Johan Nylander
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21:27 04/04/2011

Input data from file "591-tomodel-phylip/chr11_1962.phylip" (7 taxa, 927 characters)

Minimum AIC  model: GTRG
Minimum AICc model: GTRG
Minimum BIC  model: HKYG


(Output sorted by AIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		AIC		wAIC	cwAIC
GTRG	20	-2818.1843	5676.3687	0.6266	0.6266
GTRIG	21	-2818.1440	5678.2881	0.2400	0.8665
GTRI	20	-2819.7337	5679.4674	0.1331	0.9996
HKYG	16	-2830.1530	5692.3059	0.0002	0.9998
HKYI	16	-2830.9860	5693.9719	0.0001	0.9999
HKYIG	17	-2830.1488	5694.2976	0.0001	1.0000
GTR	19	-2844.7126	5727.4253	0.0000	1.0000
SYMG	17	-2850.3135	5734.6271	0.0000	1.0000
K2PG	13	-2854.8412	5735.6823	0.0000	1.0000
SYMI	17	-2850.9484	5735.8969	0.0000	1.0000
SYMIG	18	-2850.3034	5736.6067	0.0000	1.0000
K2PI	13	-2855.4186	5736.8372	0.0000	1.0000
K2PIG	14	-2854.8497	5737.6994	0.0000	1.0000
HKY	15	-2856.5849	5743.1699	0.0000	1.0000
SYM	16	-2876.8268	5785.6535	0.0000	1.0000
K2P	12	-2882.4568	5788.9136	0.0000	1.0000
F81G	15	-2903.1692	5836.3385	0.0000	1.0000
F81I	15	-2903.8366	5837.6732	0.0000	1.0000
F81IG	16	-2903.1881	5838.3762	0.0000	1.0000
JC69G	12	-2923.0331	5870.0662	0.0000	1.0000
JC69I	12	-2923.6069	5871.2138	0.0000	1.0000
JC69IG	13	-2923.0539	5872.1078	0.0000	1.0000
F81	14	-2928.3688	5884.7377	0.0000	1.0000
JC69	11	-2948.8524	5919.7048	0.0000	1.0000



(Output sorted by BIC. w: Akaike weight, cw: cumulative w.)

Model	df	lnL		BIC		wBIC	cwBIC
HKYG	16	-2830.1530	5769.6172	0.5894	0.5894
HKYI	16	-2830.9860	5771.2832	0.2563	0.8457
GTRG	20	-2818.1843	5773.0077	0.1082	0.9539
GTRI	20	-2819.7337	5776.1065	0.0230	0.9769
HKYIG	17	-2830.1488	5776.4408	0.0194	0.9963
GTRIG	21	-2818.1440	5779.7591	0.0037	1.0000
K2PG	13	-2854.8412	5798.4977	0.0000	1.0000
K2PI	13	-2855.4186	5799.6526	0.0000	1.0000
K2PIG	14	-2854.8497	5805.3468	0.0000	1.0000
HKY	15	-2856.5849	5815.6492	0.0000	1.0000
SYMG	17	-2850.3135	5816.7703	0.0000	1.0000
SYMI	17	-2850.9484	5818.0401	0.0000	1.0000
GTR	19	-2844.7126	5819.2324	0.0000	1.0000
SYMIG	18	-2850.3034	5823.5819	0.0000	1.0000
K2P	12	-2882.4568	5846.8971	0.0000	1.0000
SYM	16	-2876.8268	5862.9648	0.0000	1.0000
F81G	15	-2903.1692	5908.8178	0.0000	1.0000
F81I	15	-2903.8366	5910.1525	0.0000	1.0000
F81IG	16	-2903.1881	5915.6875	0.0000	1.0000
JC69G	12	-2923.0331	5928.0497	0.0000	1.0000
JC69I	12	-2923.6069	5929.1972	0.0000	1.0000
JC69IG	13	-2923.0539	5934.9232	0.0000	1.0000
F81	14	-2928.3688	5952.3850	0.0000	1.0000
JC69	11	-2948.8524	5972.8563	0.0000	1.0000



To specify default values for best AIC, AICc, or BIC models in MrBayes:

[Mrbayes block for the best AIC model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_1962.phylip = 1 - 927;
 Partition Dummy = 1:591-tomodel-phylip/chr11_1962.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best AICc model (GTRG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_1962.phylip = 1 - 927;
 Partition Dummy = 1:591-tomodel-phylip/chr11_1962.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=6 rates=gamma;
 Prset applyto=(1) revmatpr=Dirichlet(1.0,1.0,1.0,1.0,1.0,1.0) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


[Mrbayes block for the best BIC model (HKYG)]

BEGIN MRBAYES;
 Charset 591-tomodel-phylip/chr11_1962.phylip = 1 - 927;
 Partition Dummy = 1:591-tomodel-phylip/chr11_1962.phylip;
 Set partition = Dummy;
 Lset applyto=(1) nst=2 rates=gamma;
 Prset applyto=(1) statefreqpr=Dirichlet(1.0,1.0,1.0,1.0) tratiopr=Beta(1.0,1.0) shapepr=Uniform(0.1,50.0);
END;


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End of Output

