Combinatorial binding of transcription factors in the pluripotency control regions of the genome			
Table S6	Transfac/JASPAR Centroids		
"Note: In Figure 4, singleton predictions and non-Vertebrate JASPAR PWMS were removed."			
			
OCT4	OCT1	MATRIX	# Oligos Averaged
1.135	0.436090909	M00136-V$OCT1_02	"counts:12,11"
0.94285	0.332128205	M00138-V$OCT1_04	"counts:40,39"
0.93375	0.32775	M00133-V$TST1_01	"counts:4,4"
0.873666667	0.321333333	M00473-V$FOXO1_01	"counts:6,6"
0.863266667	0.328137931	M00464-V$POU3F2_02	"counts:60,58"
0.821	0.21075	M00109-V$CEBPB_01	"counts:4,4"
0.806391304	0.38793617	M00135-V$OCT1_01	"counts:46,47"
0.753263889	0.296913043	M00248-V$OCT1_07	"counts:72,69"
0.727166667	0.251	M00105-V$CDPCR3_01	"counts:6,6"
0.6645	0.15	M00035-V$VMAF_01	"counts:2,2"
0.605378378	0.132837838	M00463-V$POU3F2_01	"counts:37,37"
0.5735	0.23625	MA0043-HLF	"counts:4,4"
0.565375	0.1828125	M00465-V$POU6F1_01	"counts:16,16"
0.548135135	0.223972973	M00210-V$OCT_C	"counts:74,74"
0.523622222	0.123931034	MA0015-CF2-II	"counts:90,87"
0.499790698	0.125904762	MA0047-HNF-3beta	"counts:43,42"
0.4987	0.1439	M00251-V$XBP1_01	"counts:10,10"
0.481909091	0.078714286	M00451-V$NKX3A_01	"counts:22,21"
0.481515625	0.125092308	M00293-V$FREAC7_01	"counts:64,65"
0.44225	0.17596	M00195-V$OCT1_Q6	"counts:24,25"
0.435	-0.029	M00223-V$STAT_01	"counts:1,2"
0.4334	0.2081	MA0069-Pax6	"counts:10,10"
0.405883721	0.156627907	M00129-V$HFH1_01	"counts:43,43"
0.402033333	0.064862069	MA0025-E4BP4	"counts:30,29"
0.396714286	0.189153846	M00416-V$CART1_01	"counts:14,13"
0.388214286	0.204392857	M00437-V$CHX10_01	"counts:28,28"
0.3361	-0.034727273	M00291-V$FREAC3_01	"counts:10,11"
0.333	0.193	MA0001-AGL3	"counts:4,4"
0.326315068	0.069722222	M00131-V$HNF3B_01	"counts:73,72"
0.279333333	0.108928571	M00477-V$FOXO3_01	"counts:27,28"
0.2774	0.080443299	M00267-V$XFD1_01	"counts:95,97"
0.27625641	0.098526316	MA0040-HFH-1	"counts:39,38"
0.2545	-0.01925	M00095-V$CDP_01	"counts:4,4"
0.252384615	0.122346154	M00474-V$FOXO1_02	"counts:26,26"
0.247565217	0.108	M00161-V$OCT1_05	"counts:46,46"
0.178818182	0.118054545	M00294-V$HFH8_01	"counts:55,55"
0.178538462	0.190769231	M00099-V$S8_01	"counts:13,13"
0.178472222	-0.041027778	M00045-V$E4BP4_01	"counts:36,36"
0.176857143	0.144142857	M00070-V$TAL1BETAITF2_01	"counts:7,7"
0.172363636	-0.153181818	M00162-V$OCT1_06	"counts:11,11"
0.169238095	-0.01935	M00103-V$CLOX_01	"counts:21,20"
0.166633333	0.093365079	M00510-V$LHX3_01	"counts:60,63"
0.164083333	0.004461538	M00124-V$PBX1_02	"counts:12,13"
0.140054348	0.087912088	M00289-V$HFH3_01	"counts:92,91"
0.139411765	-0.138411765	M00206-V$HNF1_C	"counts:17,17"
0.1065	0.185833333	M00249-V$CHOP_01	"counts:6,6"
0.094375	0.191428571	MA0019-Chop-cEBP	"counts:8,7"
0.093740741	0.047555556	MA0008-Athb-1	"counts:27,27"
0.091283582	0.073830882	M00422-V$FOXJ2_01	"counts:134,136"
0.085695238	0.126942857	M00130-V$FOXD3_01	"counts:105,105"
0.084888889	0.066333333	M00209-V$NFY_C	"counts:18,18"
0.07375	0.0055	M00302-V$NFAT_Q6	"counts:4,4"
0.0668	0.0504	M00260-V$HLF_01	"counts:10,10"
0.0668	0.0504	M00228-V$VBP_01	"counts:10,10"
0.0656	0.0116	M00264-V$STAF_02	"counts:10,10"
0.0615	0.0285	M00211-V$PADS_C	"counts:2,2"
0.06125	0.0625	M00117-V$CEBPB_02	"counts:4,4"
0.057045455	-0.068391304	M00132-V$HNF1_01	"counts:22,23"
0.054071429	-0.004410714	M00268-V$XFD2_01	"counts:56,56"
0.053545455	0.095753521	MA0042-HFH-3	"counts:143,142"
0.053	0.09525	M00454-V$MRF2_01	"counts:4,4"
0.0388	0.0886	M00538-V$HTF_01	"counts:5,5"
0.035985612	0.116057554	MA0041-HFH-2	"counts:139,139"
0.035615385	0.031916667	MA0017-COUP-TF	"counts:13,12"
0.035615385	0.031916667	M00158-V$COUP_01	"counts:13,12"
0.032	-0.163733333	MA0070-Pbx	"counts:14,15"
0.031045455	-0.026545455	M00037-V$NFE2_01	"counts:22,22"
0.029333333	-0.032	M00189-V$AP2_Q6	"counts:3,3"
0.0151875	0.168875	M00420-V$MEIS1AHOXA9_01	"counts:16,16"
0.012666667	-0.0921	MA0046-HNF-1	"counts:30,30"
0.012473684	-0.069473684	M00145-V$BRN2_01	"counts:19,19"
0.008	0.102666667	MA0007-Androgen	"counts:6,6"
0.001113636	0.057295455	MA0010-Broad-complex_1	"counts:44,44"
-0.012428571	0.000142857	M00284-V$TCF11MAFG_01	"counts:7,7"
-0.015333333	0.050875	M00269-V$XFD3_01	"counts:24,24"
-0.0185	0.10625	M00186-V$SRF_Q6	"counts:4,4"
-0.020972222	-0.001555556	M00421-V$MEIS1BHOXA9_02	"counts:36,36"
-0.029	0.1455	M00242-V$PPARA_01	"counts:2,2"
-0.032	0.232	M00017-V$ATF_01	"counts:2,2"
-0.036	0.03	M00241-V$NKX25_02	"counts:3,3"
-0.037894737	0.077473684	M00459-V$STAT5B_01	"counts:19,19"
-0.045	-0.125875	M00478-V$CDC5_01	"counts:7,8"
-0.046404255	0.020744681	M00424-V$NKX61_01	"counts:47,47"
-0.04905	0.12255	M00290-V$FREAC2_01	"counts:20,20"
-0.0519375	0.069625	MA0029-Evi-1	"counts:16,16"
-0.055677966	0.004517241	MA0055-Myf	"counts:59,58"
-0.061473684	0.026736842	M00292-V$FREAC4_01	"counts:19,19"
-0.062115108	0.09265035	MA0045-HMG-IY	"counts:139,143"
-0.06825	0.06025	MA0013-Broad-complex_4	"counts:4,4"
-0.082954545	0.017681818	MA0051-Irf-2	"counts:22,22"
-0.087846154	0.132692308	M00453-V$IRF7_01	"counts:13,13"
-0.088	-0.0405	MA0066-PPARgamma	"counts:2,2"
-0.0913	-0.0943	MA0088-Staf	"counts:10,10"
-0.092777778	0.0922	M00410-V$SOX9_B1	"counts:9,10"
-0.095238095	0.0355	MA0050-Irf-1	"counts:21,22"
-0.095761905	-0.105818182	M00212-V$POLY_C	"counts:21,22"
-0.1014	0.0902	M00201-V$CEBP_C	"counts:5,5"
-0.108	0.0476	M00244-V$NGFIC_01	"counts:10,10"
-0.108707317	-0.043860465	MA0082-SQUA	"counts:41,43"
-0.109032258	0.047796875	M00081-V$EVI1_04	"counts:62,64"
-0.110361111	-0.015028571	M00423-V$FOXJ2_02	"counts:36,35"
-0.111227848	0.1019125	MA0049-Hunchback	"counts:79,80"
-0.112571429	0.178285714	M00456-V$FAC1_01	"counts:7,7"
-0.1126875	-0.0895	M00052-V$NFKAPPAB65_01	"counts:16,16"
-0.115785714	-0.043714286	MA0110-ATHB5	"counts:14,14"
-0.124111111	0.233222222	M00088-V$IK3_01	"counts:9,9"
-0.1326	0.1938	MA0060-NF-Y	"counts:10,10"
-0.1379	-0.062272727	M00026-V$RSRFC4_01	"counts:10,11"
-0.143911765	-0.005647059	M00485-V$NKX22_01	"counts:34,34"
-0.146333333	0.062	M00011-V$EVI1_06	"counts:9,9"
-0.1475	0.173166667	M00412-V$AREB6_01	"counts:6,6"
-0.150083333	0.05875	M00062-V$IRF1_01	"counts:24,24"
-0.15075	0.078	M00065-V$TAL1BETAE47_01	"counts:8,8"
-0.15475	0.1865	M00185-V$NFY_Q6	"counts:4,4"
-0.156	0.085	M00483-V$ATF6_01	"counts:2,2"
-0.1575	-0.2465	M00262-V$STAF_01	"counts:2,2"
-0.1664	0.0012	M00457-V$STAT5A_01	"counts:10,10"
-0.166535714	-0.06725	MA0090-TEF-1	"counts:28,28"
-0.167606061	0.0089	MA0052-MEF2	"counts:33,30"
-0.170333333	0.0654	MA0091-Tal1beta-E47S	"counts:9,10"
-0.172857143	0.086857143	M00287-V$NFY_01	"counts:7,7"
-0.174875	0.02225	MA0083-SRF	"counts:8,8"
-0.176	0.279	M00214-V$SEF1_C	"counts:2,2"
-0.1794	0.020333333	M00079-V$EVI1_02	"counts:15,15"
-0.181764706	0.071176471	MA0031-FREAC-4	"counts:17,17"
-0.184066667	-0.1484375	M00001-V$MYOD_01	"counts:15,16"
-0.19	0.075	M00528-V$PPARG_03	"counts:9,9"
-0.1915	-0.342	M00173-V$AP1_Q2	"counts:2,2"
-0.192666667	-0.145833333	M00066-V$TAL1ALPHAE47_01	"counts:9,6"
-0.1955	-0.001607143	M00216-V$TATA_C	"counts:28,28"
-0.195642857	-0.055461538	M00215-V$SRF_C	"counts:14,13"
-0.197	-0.312	MA0101-c-REL	"counts:2,1"
-0.197	-0.312	M00053-V$CREL_01	"counts:2,1"
-0.199636364	-0.036545455	M00086-V$IK1_01	"counts:11,11"
-0.204173913	0.008173913	M00418-V$TGIF_01	"counts:23,23"
-0.2075	0.018470588	M00526-V$GCNF_01	"counts:18,17"
-0.210333333	-0.163217391	MA0107-p65	"counts:24,23"
-0.217473684	0.024263158	M00476-V$FOXO4_02	"counts:19,19"
-0.2185	-0.0992	MA0105-p50	"counts:16,15"
-0.221904762	-0.06047619	MA0072-RORalfa-2	"counts:21,21"
-0.221904762	-0.06047619	M00157-V$RORA2_01	"counts:21,21"
-0.2265	0.2215	M00007-V$ELK1_01	"counts:2,2"
-0.23	0.098666667	M00233-V$MEF2_04	"counts:2,3"
-0.232466667	-0.010125	M00411-V$HNF4_01_B	"counts:15,16"
-0.234375	0.079625	MA0009-Brachyury	"counts:8,8"
-0.2345	0.0535	M00080-V$EVI1_03	"counts:2,2"
-0.237833333	-0.117416667	M00057-V$COMP1_01	"counts:12,12"
-0.238	-0.335	M00041-V$CREBP1CJUN_01	"counts:2,1"
-0.238	-0.335	M00039-V$CREB_01	"counts:2,1"
-0.238	-0.333	M00024-V$E2F_01	"counts:2,1"
-0.2400625	-0.0853125	MA0030-FREAC-2	"counts:16,16"
-0.245111111	0.110888889	M00495-V$BACH1_01	"counts:9,9"
-0.245307692	-0.022	M00258-V$ISRE_01	"counts:13,13"
-0.246642857	-0.107916667	M00051-V$NFKAPPAB50_01	"counts:14,12"
-0.2475	-0.057954545	M00532-V$RP58_01	"counts:24,22"
-0.25	-0.02475	MA0085-SU_h	"counts:8,8"
-0.251142857	-0.073571429	M00346-V$GATA1_05	"counts:7,7"
-0.25375	0.19175	M00347-V$GATA1_06	"counts:4,4"
-0.254636364	-0.0678	M00208-V$NFKB_C	"counts:11,10"
-0.259	-0.248	M00350-V$GATA3_02	"counts:2,1"
-0.259	-0.248	M00349-V$GATA2_03	"counts:2,1"
-0.259	-0.248	M00348-V$GATA2_02	"counts:2,1"
-0.259311828	-0.0315	MA0073-RREB-1	"counts:93,92"
-0.261	0.2305	M00108-V$NRF2_01	"counts:2,2"
-0.261833333	-0.091	M00176-V$AP4_Q6	"counts:6,6"
-0.263285714	0.0145	M00238-V$BARBIE_01	"counts:14,14"
-0.265142857	-0.108631579	MA0061-NF-kappaB	"counts:21,19"
-0.269166667	-0.162111111	M00205-V$GRE_C	"counts:18,18"
-0.274875	-0.13	M00250-V$GFI1_01	"counts:8,8"
-0.277857143	-0.155	M00280-V$RFX1_01	"counts:7,7"
-0.279	0.021	M00236-V$ARNT_01	"counts:3,4"
-0.27925	0.147	M00490-V$BACH2_01	"counts:4,4"
-0.279666667	-0.097	M00139-V$AHR_01	"counts:6,6"
-0.27975	0.176	M00254-V$CAAT_01	"counts:4,4"
-0.282	-0.043428571	M00261-V$OLF1_01	"counts:7,7"
-0.282803419	-0.056698276	M00257-V$RREB1_01	"counts:117,116"
-0.28375	-0.18475	M00063-V$IRF2_01	"counts:4,4"
-0.285923077	-0.09825	M00194-V$NFKB_Q6	"counts:13,12"
-0.2872	-0.058636364	M00231-V$MEF2_02	"counts:10,11"
-0.289153846	-0.004466667	M00232-V$MEF2_03	"counts:13,15"
-0.2915	-0.176	M00517-V$AP1_01	"counts:4,4"
-0.293242424	0.027030303	M00491-V$MAZR_01	"counts:33,33"
-0.295939394	-0.18215625	M00155-V$ARP1_01	"counts:33,32"
-0.2967	-0.119222222	MA0023-Dorsal_2	"counts:10,9"
-0.2968	-0.103	M00082-V$EVI1_05	"counts:5,5"
-0.2995	-0.3075	M00069-V$YY1_02	"counts:2,2"
-0.304	-0.3375	M00004-V$CMYB_01	"counts:2,2"
-0.306846154	-0.117583333	M00054-V$NFKAPPAB_01	"counts:13,12"
-0.3075	-0.21	M00480-V$LUN1_01	"counts:2,2"
-0.309333333	-0.017333333	M00071-V$E47_02	"counts:6,6"
-0.30952381	0.05447619	M00255-V$GC_01	"counts:21,21"
-0.317035714	0.004962963	M00196-V$SP1_Q6	"counts:56,54"
-0.319571429	-0.261142857	M00102-V$CDP_02	"counts:7,7"
-0.3254	-0.0806	M00068-V$HEN1_01	"counts:5,5"
-0.3278	0.037666667	M00222-V$HAND1E47_01	"counts:5,6"
-0.3286	0.0305	M00281-V$RFX1_02	"counts:5,4"
-0.329733333	0.040933333	M00006-V$MEF2_01	"counts:15,15"
-0.331090909	-0.076	MA0016-CFI-USP	"counts:11,11"
-0.3316	-0.114666667	M00134-V$HNF4_01	"counts:5,6"
-0.335666667	-0.029333333	M00143-V$PAX5_01	"counts:3,3"
-0.34	-0.2085	MA0076-SAP-1	"counts:2,2"
-0.3412	-0.10825	M00179-V$CREBP1_Q2	"counts:5,4"
-0.347	-0.24325	M00246-V$EGR2_01	"counts:4,4"
-0.347	-0.24325	M00245-V$EGR3_01	"counts:4,4"
-0.347	-0.24325	M00243-V$EGR1_01	"counts:4,4"
-0.3505	-0.0365	M00058-V$HEN1_02	"counts:4,4"
-0.351	0.1365	M00085-V$ZID_01	"counts:2,2"
-0.35625	0.07525	M00193-V$NF1_Q6	"counts:4,4"
-0.3565	-0.0355	MA0048-Hen-1	"counts:6,6"
-0.362833333	-0.079470588	M00156-V$RORA1_01	"counts:18,17"
-0.363266667	-0.197	MA0022-Dorsal_1	"counts:15,15"
-0.363714286	0.050333333	MA0068-Pax-4	"counts:7,6"
-0.382714286	-0.150642857	M00220-V$SREBP1_01	"counts:14,14"
-0.386583333	-0.252416667	MA0074-RXR-VDR	"counts:12,12"
-0.391375	0.005125	M00084-V$MZF1_02	"counts:8,8"
-0.392	-0.199	M00235-V$AHRARNT_01	"counts:6,6"
-0.3925	0.025	M00414-V$AREB6_03	"counts:2,2"
-0.392583333	-0.114818182	MA0071-RORalfa-1	"counts:12,11"
-0.3935	-0.337	M00115-V$TAXCREB_02	"counts:2,2"
-0.412571429	-0.214357143	M00141-V$LYF1_01	"counts:14,14"
-0.42625	-0.0665	M00413-V$AREB6_02	"counts:4,4"
-0.462333333	0.035666667	M00002-V$E47_01	"counts:3,3"
-0.554833333	-0.144166667	M00460-V$STAT5A_02	"counts:6,6"