LAR.txt
	The log allele probe intensity ratio 
	rowname: "Gene_Name Transcribed_SNP" 
	colname: labels of F1 lines, column 1:57 are LAR for antisense strain, column 58:114 are LAR for sense strain

maternalGeno.txt
	genotype calls for 57 maternal accessions of the F1 hybrids, 1 represents Col allele, 3 represents non-Col allele 
	rowname: SNP ID as "chr_bp_Col allele_non-Col allele"
	colname: labels of F1 lines

paternalGeno.txt
	genotype calls for 57 paternal accessions of the F1 hybrids, 1 represents Col allele, 3 represents non-Col allele 
	rowname: SNP ID as "chr_bp_Col allele_nol-Col allele"
	colname: labels of F1 lines

ase.txt
	significant ASE associations at q < 0.2
	rowname: "Gene_Name Transcribed_SNP Associated_SNP"
	column: the regression coefficient, d score, and permutation qvalue for the corresponding association