Sample	Total (Mio.)	Unique reads (% of total)	Passed filters (% of total)	Aligned (% of passed)	Single hit (% of passed)	Single hit genome only (% of passed)
DmS2DRSC_H3K4me3	7.6	6.2 (82.0)	7.5 (98.4)	6.5 (87.1)	6.9 (91.5)	4.8 (64.6)
DmS2DRSC_Pc	8.3	6.8 (81.5)	8.2 (98.1)	6.5 (80.3)	6.1 (74.3)	4.8 (58.5)
DmS2DRSC_Pc_b	15.8	10.3 (65.3)	15.5 (98.1)	14.2 (91.8)	11.1 (71.9)	8.6 (55.5)
DmS2DRSC_Ph	8.2	6.3 (77.1)	8.1 (98.2)	7.1 (88.1)	6.8 (83.9)	5.0 (61.3)
DmS2DRSC_Ph_b	16.9	10.8 (64.0)	16.6 (98.5)	15.3 (92.1)	12.8 (76.8)	9.1 (54.6)
DmS2DRSC_Psc	8	5.7 (71.4)	7.8 (98.2)	6.4 (81.4)	5.0 (64.5)	4.0 (51.1)
DmS2DRSC_Psc_b	16.6	11.2 (67.3)	16.2 (97.8)	14.6 (90.1)	11.7 (72.3)	9.1 (56.0)
DmS2DRSC_Trx	6.5	5.2 (79.8)	6.4 (98.0)	4.5 (70.0)	3.9 (61.4)	3.1 (48.5)
DmS2DRSC_Trx_b	15.2	9.4 (62.3)	14.9 (98.5)	13.4 (89.9)	9.6 (64.0)	7.5 (50.4)
DmS2DRSC_Input	11.9	9.7 (81.8)	11.4 (96.6)	10.2 (88.7)	10.0 (87.0)	7.7 (67.0)
DmS2DRSC_Input_b	18.3	14.6 (79.4)	17.8 (97.0)	16.3 (91.5)	16.5 (92.8)	12.3 (69.0)
DmS2DRSC_RNA	7.4	4.0 (54.8)	7.3 (99.7)	6.3 (86.3)	6.3 (85.3)	3.2 (43.9)
DmEmbryo_5pMACE	6.6	0.4 (5.8)	6.6 (99.8)	5.9 (89.8)	0.5 (7.0)	0.3 (4.2)
DmS2DRSC_5pMACE	6.4	0.4 (6.5)	6.3 (98.0)	4.4 (70.6)	0.4 (6.4)	0.2 (3.7)