Command line Training Set First Motif Summary of Motifs Termination Explanation


Search sequence databases for the best combined matches with these motifs using MAST.
Search sequence databases for all matches with these motifs using FIMO.
Find Genome Ontology terms associated with upstream sequences matching these motifs using GOMO.
Submit these motifs to BLOCKS multiple alignment processor.

MEME - Motif discovery tool

MEME version 4.3.0 (Release date: Sat Sep 26 01:51:56 PDT 2009)

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.sdsc.edu.

This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.sdsc.edu.

REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.

TRAINING SET
DATAFILE= ../phastv6_official_filt2_min8nt.fa
ALPHABET= ACGT
Sequence name Weight Length Sequence name Weight Length
ce6_ct_v6step13_chrI.1 1.0000 25 ce6_ct_v6step13_chrI.10070 1.0000 69
ce6_ct_v6step13_chrI.10136 1.0000 34 ce6_ct_v6step13_chrI.10233 1.0000 26
ce6_ct_v6step13_chrI.10234 1.0000 12 ce6_ct_v6step13_chrI.10306 1.0000 28
ce6_ct_v6step13_chrI.10383 1.0000 12 ce6_ct_v6step13_chrI.10584 1.0000 72
ce6_ct_v6step13_chrI.10589 1.0000 18 ce6_ct_v6step13_chrI.10789 1.0000 25
ce6_ct_v6step13_chrI.1088 1.0000 12 ce6_ct_v6step13_chrI.1089 1.0000 28
ce6_ct_v6step13_chrI.10967 1.0000 16 ce6_ct_v6step13_chrI.1100 1.0000 12
ce6_ct_v6step13_chrI.11005 1.0000 12 ce6_ct_v6step13_chrI.11096 1.0000 38
ce6_ct_v6step13_chrI.1110 1.0000 14 ce6_ct_v6step13_chrI.11100 1.0000 17
ce6_ct_v6step13_chrI.1124 1.0000 16 ce6_ct_v6step13_chrI.1125 1.0000 24
ce6_ct_v6step13_chrI.11293 1.0000 20 ce6_ct_v6step13_chrI.11356 1.0000 41
ce6_ct_v6step13_chrI.11394 1.0000 13 ce6_ct_v6step13_chrI.11403 1.0000 105
ce6_ct_v6step13_chrI.11433 1.0000 31 ce6_ct_v6step13_chrI.11497 1.0000 18
ce6_ct_v6step13_chrI.11498 1.0000 27 ce6_ct_v6step13_chrI.11509 1.0000 16
ce6_ct_v6step13_chrI.11528 1.0000 21 ce6_ct_v6step13_chrI.11535 1.0000 19
ce6_ct_v6step13_chrI.11536 1.0000 30 ce6_ct_v6step13_chrI.11551 1.0000 47
ce6_ct_v6step13_chrI.1158 1.0000 29 ce6_ct_v6step13_chrI.11616 1.0000 19
ce6_ct_v6step13_chrI.1171 1.0000 22 ce6_ct_v6step13_chrI.1172 1.0000 24
ce6_ct_v6step13_chrI.11722 1.0000 35 ce6_ct_v6step13_chrI.11772 1.0000 13
ce6_ct_v6step13_chrI.11780 1.0000 25 ce6_ct_v6step13_chrI.11809 1.0000 14
ce6_ct_v6step13_chrI.1188 1.0000 13 ce6_ct_v6step13_chrI.11889 1.0000 23
ce6_ct_v6step13_chrI.11894 1.0000 33 ce6_ct_v6step13_chrI.11902 1.0000 35
ce6_ct_v6step13_chrI.11903 1.0000 53 ce6_ct_v6step13_chrI.11927 1.0000 20
ce6_ct_v6step13_chrI.11928 1.0000 40 ce6_ct_v6step13_chrI.11965 1.0000 21
ce6_ct_v6step13_chrI.11992 1.0000 38 ce6_ct_v6step13_chrI.11993 1.0000 36
ce6_ct_v6step13_chrI.1205 1.0000 35 ce6_ct_v6step13_chrI.1206 1.0000 10
ce6_ct_v6step13_chrI.12160 1.0000 23 ce6_ct_v6step13_chrI.12166 1.0000 73
ce6_ct_v6step13_chrI.12201 1.0000 11 ce6_ct_v6step13_chrI.12202 1.0000 31
ce6_ct_v6step13_chrI.12253 1.0000 10 ce6_ct_v6step13_chrI.12254 1.0000 12
ce6_ct_v6step13_chrI.12299 1.0000 20 ce6_ct_v6step13_chrI.12369 1.0000 44
ce6_ct_v6step13_chrI.12391 1.0000 18 ce6_ct_v6step13_chrI.1242 1.0000 43
ce6_ct_v6step13_chrI.12478 1.0000 34 ce6_ct_v6step13_chrI.12479 1.0000 39
ce6_ct_v6step13_chrI.12538 1.0000 10 ce6_ct_v6step13_chrI.12706 1.0000 40
ce6_ct_v6step13_chrI.12887 1.0000 24 ce6_ct_v6step13_chrI.12915 1.0000 28
ce6_ct_v6step13_chrI.12959 1.0000 10 ce6_ct_v6step13_chrI.1296 1.0000 46
ce6_ct_v6step13_chrI.13067 1.0000 35 ce6_ct_v6step13_chrI.13090 1.0000 23
ce6_ct_v6step13_chrI.13127 1.0000 18 ce6_ct_v6step13_chrI.13145 1.0000 20
ce6_ct_v6step13_chrI.13147 1.0000 38 ce6_ct_v6step13_chrI.13183 1.0000 38
ce6_ct_v6step13_chrI.13190 1.0000 29 ce6_ct_v6step13_chrI.13222 1.0000 21
ce6_ct_v6step13_chrI.13223 1.0000 15 ce6_ct_v6step13_chrI.13234 1.0000 14
ce6_ct_v6step13_chrI.13235 1.0000 20 ce6_ct_v6step13_chrI.13256 1.0000 32
ce6_ct_v6step13_chrI.1326 1.0000 15 ce6_ct_v6step13_chrI.13272 1.0000 16
ce6_ct_v6step13_chrI.13275 1.0000 19 ce6_ct_v6step13_chrI.1328 1.0000 15
ce6_ct_v6step13_chrI.13291 1.0000 38 ce6_ct_v6step13_chrI.13293 1.0000 44
ce6_ct_v6step13_chrI.13299 1.0000 36 ce6_ct_v6step13_chrI.13300 1.0000 21
ce6_ct_v6step13_chrI.13306 1.0000 23 ce6_ct_v6step13_chrI.13309 1.0000 16
ce6_ct_v6step13_chrI.13329 1.0000 26 ce6_ct_v6step13_chrI.13335 1.0000 27
ce6_ct_v6step13_chrI.13339 1.0000 10 ce6_ct_v6step13_chrI.13340 1.0000 14
ce6_ct_v6step13_chrI.13342 1.0000 23 ce6_ct_v6step13_chrI.13344 1.0000 17
ce6_ct_v6step13_chrI.13345 1.0000 13 ce6_ct_v6step13_chrI.13350 1.0000 36
ce6_ct_v6step13_chrI.13354 1.0000 28 ce6_ct_v6step13_chrI.1337 1.0000 16
ce6_ct_v6step13_chrI.13395 1.0000 35 ce6_ct_v6step13_chrI.13416 1.0000 25
ce6_ct_v6step13_chrI.13428 1.0000 17 ce6_ct_v6step13_chrI.13501 1.0000 10
ce6_ct_v6step13_chrI.13504 1.0000 15 ce6_ct_v6step13_chrI.13514 1.0000 19
ce6_ct_v6step13_chrI.13529 1.0000 10 ce6_ct_v6step13_chrI.13530 1.0000 14
ce6_ct_v6step13_chrI.13531 1.0000 15 ce6_ct_v6step13_chrI.13537 1.0000 19
ce6_ct_v6step13_chrI.13544 1.0000 21 ce6_ct_v6step13_chrI.13554 1.0000 16
ce6_ct_v6step13_chrI.13565 1.0000 35 ce6_ct_v6step13_chrI.13597 1.0000 18
ce6_ct_v6step13_chrI.136 1.0000 30 ce6_ct_v6step13_chrI.13611 1.0000 26
ce6_ct_v6step13_chrI.13686 1.0000 33 ce6_ct_v6step13_chrI.13699 1.0000 32
ce6_ct_v6step13_chrI.13707 1.0000 19 ce6_ct_v6step13_chrI.13708 1.0000 28
ce6_ct_v6step13_chrI.13736 1.0000 46 ce6_ct_v6step13_chrI.13778 1.0000 17
ce6_ct_v6step13_chrI.13802 1.0000 64 ce6_ct_v6step13_chrI.13807 1.0000 11
ce6_ct_v6step13_chrI.13809 1.0000 36 ce6_ct_v6step13_chrI.13817 1.0000 20
ce6_ct_v6step13_chrI.13846 1.0000 27 ce6_ct_v6step13_chrI.13855 1.0000 15
ce6_ct_v6step13_chrI.13873 1.0000 37 ce6_ct_v6step13_chrI.13875 1.0000 27
ce6_ct_v6step13_chrI.13883 1.0000 18 ce6_ct_v6step13_chrI.13925 1.0000 16
ce6_ct_v6step13_chrI.13936 1.0000 17 ce6_ct_v6step13_chrI.13938 1.0000 25
ce6_ct_v6step13_chrI.13957 1.0000 32 ce6_ct_v6step13_chrI.13974 1.0000 13
ce6_ct_v6step13_chrI.13983 1.0000 21 ce6_ct_v6step13_chrI.14029 1.0000 13
ce6_ct_v6step13_chrI.14038 1.0000 23 ce6_ct_v6step13_chrI.14046 1.0000 21
ce6_ct_v6step13_chrI.14072 1.0000 39 ce6_ct_v6step13_chrI.14073 1.0000 37
ce6_ct_v6step13_chrI.14074 1.0000 31 ce6_ct_v6step13_chrI.14085 1.0000 45
ce6_ct_v6step13_chrI.14086 1.0000 15 ce6_ct_v6step13_chrI.14089 1.0000 18
ce6_ct_v6step13_chrI.14090 1.0000 22 ce6_ct_v6step13_chrI.14091 1.0000 25
ce6_ct_v6step13_chrI.14095 1.0000 28 ce6_ct_v6step13_chrI.14105 1.0000 22
ce6_ct_v6step13_chrI.14121 1.0000 39 ce6_ct_v6step13_chrI.14140 1.0000 27
ce6_ct_v6step13_chrI.14144 1.0000 39 ce6_ct_v6step13_chrI.14146 1.0000 51
ce6_ct_v6step13_chrI.14150 1.0000 17 ce6_ct_v6step13_chrI.14161 1.0000 40
ce6_ct_v6step13_chrI.14162 1.0000 31 ce6_ct_v6step13_chrI.14220 1.0000 16
ce6_ct_v6step13_chrI.14230 1.0000 29 ce6_ct_v6step13_chrI.14329 1.0000 15
ce6_ct_v6step13_chrI.14461 1.0000 13 ce6_ct_v6step13_chrI.14462 1.0000 27
ce6_ct_v6step13_chrI.14470 1.0000 15 ce6_ct_v6step13_chrI.14502 1.0000 37
ce6_ct_v6step13_chrI.14528 1.0000 41 ce6_ct_v6step13_chrI.14543 1.0000 30
ce6_ct_v6step13_chrI.14548 1.0000 12 ce6_ct_v6step13_chrI.14549 1.0000 17
ce6_ct_v6step13_chrI.14560 1.0000 60 ce6_ct_v6step13_chrI.14561 1.0000 31
ce6_ct_v6step13_chrI.14578 1.0000 18 ce6_ct_v6step13_chrI.14586 1.0000 36
ce6_ct_v6step13_chrI.1462 1.0000 24 ce6_ct_v6step13_chrI.14667 1.0000 11
ce6_ct_v6step13_chrI.14668 1.0000 21 ce6_ct_v6step13_chrI.14715 1.0000 26
ce6_ct_v6step13_chrI.14737 1.0000 23 ce6_ct_v6step13_chrI.14780 1.0000 21
ce6_ct_v6step13_chrI.14783 1.0000 23 ce6_ct_v6step13_chrI.14785 1.0000 25
ce6_ct_v6step13_chrI.14800 1.0000 13 ce6_ct_v6step13_chrI.14829 1.0000 33
ce6_ct_v6step13_chrI.14876 1.0000 11 ce6_ct_v6step13_chrI.14943 1.0000 30
ce6_ct_v6step13_chrI.15002 1.0000 19 ce6_ct_v6step13_chrI.15033 1.0000 15
ce6_ct_v6step13_chrI.15062 1.0000 16 ce6_ct_v6step13_chrI.15129 1.0000 13
ce6_ct_v6step13_chrI.15133 1.0000 16 ce6_ct_v6step13_chrI.15138 1.0000 27
ce6_ct_v6step13_chrI.15158 1.0000 23 ce6_ct_v6step13_chrI.15165 1.0000 16
ce6_ct_v6step13_chrI.15202 1.0000 41 ce6_ct_v6step13_chrI.15211 1.0000 27
ce6_ct_v6step13_chrI.15267 1.0000 35 ce6_ct_v6step13_chrI.15268 1.0000 39
ce6_ct_v6step13_chrI.1527 1.0000 64 ce6_ct_v6step13_chrI.15272 1.0000 29
ce6_ct_v6step13_chrI.15274 1.0000 60 ce6_ct_v6step13_chrI.15289 1.0000 14
ce6_ct_v6step13_chrI.1529 1.0000 30 ce6_ct_v6step13_chrI.15293 1.0000 21
ce6_ct_v6step13_chrI.15322 1.0000 23 ce6_ct_v6step13_chrI.1534 1.0000 27
ce6_ct_v6step13_chrI.15367 1.0000 22 ce6_ct_v6step13_chrI.15380 1.0000 16
ce6_ct_v6step13_chrI.15386 1.0000 16 ce6_ct_v6step13_chrI.15401 1.0000 15
ce6_ct_v6step13_chrI.15425 1.0000 23 ce6_ct_v6step13_chrI.15443 1.0000 26
ce6_ct_v6step13_chrI.15445 1.0000 19 ce6_ct_v6step13_chrI.15484 1.0000 19
ce6_ct_v6step13_chrI.15506 1.0000 18 ce6_ct_v6step13_chrI.15557 1.0000 55
ce6_ct_v6step13_chrI.15600 1.0000 27 ce6_ct_v6step13_chrI.15654 1.0000 30
ce6_ct_v6step13_chrI.15668 1.0000 16 ce6_ct_v6step13_chrI.15672 1.0000 16
ce6_ct_v6step13_chrI.15679 1.0000 16 ce6_ct_v6step13_chrI.15726 1.0000 20
ce6_ct_v6step13_chrI.15784 1.0000 24 ce6_ct_v6step13_chrI.1580 1.0000 23
ce6_ct_v6step13_chrI.15838 1.0000 25 ce6_ct_v6step13_chrI.15851 1.0000 21
ce6_ct_v6step13_chrI.1588 1.0000 15 ce6_ct_v6step13_chrI.15989 1.0000 30
ce6_ct_v6step13_chrI.15990 1.0000 36 ce6_ct_v6step13_chrI.1600 1.0000 28
ce6_ct_v6step13_chrI.1601 1.0000 12 ce6_ct_v6step13_chrI.16043 1.0000 29
ce6_ct_v6step13_chrI.16159 1.0000 23 ce6_ct_v6step13_chrI.16162 1.0000 29
ce6_ct_v6step13_chrI.16295 1.0000 37 ce6_ct_v6step13_chrI.1632 1.0000 19
ce6_ct_v6step13_chrI.1671 1.0000 33 ce6_ct_v6step13_chrI.1694 1.0000 10
ce6_ct_v6step13_chrI.1700 1.0000 86 ce6_ct_v6step13_chrI.1757 1.0000 13
ce6_ct_v6step13_chrI.177 1.0000 29 ce6_ct_v6step13_chrI.1797 1.0000 30
ce6_ct_v6step13_chrI.1799 1.0000 23 ce6_ct_v6step13_chrI.18 1.0000 13
ce6_ct_v6step13_chrI.1809 1.0000 16 ce6_ct_v6step13_chrI.1812 1.0000 32
ce6_ct_v6step13_chrI.1824 1.0000 23 ce6_ct_v6step13_chrI.1825 1.0000 67
ce6_ct_v6step13_chrI.1826 1.0000 27 ce6_ct_v6step13_chrI.1827 1.0000 11
ce6_ct_v6step13_chrI.183 1.0000 17 ce6_ct_v6step13_chrI.184 1.0000 28
ce6_ct_v6step13_chrI.1922 1.0000 45 ce6_ct_v6step13_chrI.1949 1.0000 19
ce6_ct_v6step13_chrI.1950 1.0000 11 ce6_ct_v6step13_chrI.1958 1.0000 14
ce6_ct_v6step13_chrI.196 1.0000 50 ce6_ct_v6step13_chrI.197 1.0000 24
ce6_ct_v6step13_chrI.2000 1.0000 48 ce6_ct_v6step13_chrI.2018 1.0000 26
ce6_ct_v6step13_chrI.2057 1.0000 30 ce6_ct_v6step13_chrI.2099 1.0000 21
ce6_ct_v6step13_chrI.2125 1.0000 22 ce6_ct_v6step13_chrI.2151 1.0000 24
ce6_ct_v6step13_chrI.2170 1.0000 17 ce6_ct_v6step13_chrI.2192 1.0000 15
ce6_ct_v6step13_chrI.2215 1.0000 28 ce6_ct_v6step13_chrI.2273 1.0000 31
ce6_ct_v6step13_chrI.2409 1.0000 23 ce6_ct_v6step13_chrI.2421 1.0000 19
ce6_ct_v6step13_chrI.2425 1.0000 36 ce6_ct_v6step13_chrI.2439 1.0000 30
ce6_ct_v6step13_chrI.2441 1.0000 22 ce6_ct_v6step13_chrI.2447 1.0000 22
ce6_ct_v6step13_chrI.2466 1.0000 25 ce6_ct_v6step13_chrI.2500 1.0000 32
ce6_ct_v6step13_chrI.2503 1.0000 27 ce6_ct_v6step13_chrI.2504 1.0000 30
ce6_ct_v6step13_chrI.2609 1.0000 34 ce6_ct_v6step13_chrI.2675 1.0000 41
ce6_ct_v6step13_chrI.27 1.0000 23 ce6_ct_v6step13_chrI.2711 1.0000 16
ce6_ct_v6step13_chrI.2733 1.0000 13 ce6_ct_v6step13_chrI.2734 1.0000 52
ce6_ct_v6step13_chrI.2735 1.0000 32 ce6_ct_v6step13_chrI.2757 1.0000 48
ce6_ct_v6step13_chrI.2764 1.0000 47 ce6_ct_v6step13_chrI.2771 1.0000 42
ce6_ct_v6step13_chrI.28 1.0000 51 ce6_ct_v6step13_chrI.2819 1.0000 27
ce6_ct_v6step13_chrI.2821 1.0000 30 ce6_ct_v6step13_chrI.284 1.0000 23
ce6_ct_v6step13_chrI.2847 1.0000 21 ce6_ct_v6step13_chrI.2864 1.0000 29
ce6_ct_v6step13_chrI.289 1.0000 11 ce6_ct_v6step13_chrI.2918 1.0000 16
ce6_ct_v6step13_chrI.2921 1.0000 22 ce6_ct_v6step13_chrI.2937 1.0000 30
ce6_ct_v6step13_chrI.3058 1.0000 22 ce6_ct_v6step13_chrI.3068 1.0000 36
ce6_ct_v6step13_chrI.3075 1.0000 13 ce6_ct_v6step13_chrI.3134 1.0000 22
ce6_ct_v6step13_chrI.3163 1.0000 12 ce6_ct_v6step13_chrI.3184 1.0000 39
ce6_ct_v6step13_chrI.3230 1.0000 29 ce6_ct_v6step13_chrI.3232 1.0000 23
ce6_ct_v6step13_chrI.3377 1.0000 23 ce6_ct_v6step13_chrI.3379 1.0000 19
ce6_ct_v6step13_chrI.341 1.0000 31 ce6_ct_v6step13_chrI.342 1.0000 16
ce6_ct_v6step13_chrI.345 1.0000 24 ce6_ct_v6step13_chrI.3512 1.0000 36
ce6_ct_v6step13_chrI.355 1.0000 16 ce6_ct_v6step13_chrI.3582 1.0000 22
ce6_ct_v6step13_chrI.3583 1.0000 31 ce6_ct_v6step13_chrI.3594 1.0000 37
ce6_ct_v6step13_chrI.36 1.0000 13 ce6_ct_v6step13_chrI.3637 1.0000 34
ce6_ct_v6step13_chrI.3698 1.0000 30 ce6_ct_v6step13_chrI.3782 1.0000 10
ce6_ct_v6step13_chrI.3814 1.0000 25 ce6_ct_v6step13_chrI.3828 1.0000 16
ce6_ct_v6step13_chrI.3923 1.0000 30 ce6_ct_v6step13_chrI.408 1.0000 42
ce6_ct_v6step13_chrI.4080 1.0000 24 ce6_ct_v6step13_chrI.4128 1.0000 29
ce6_ct_v6step13_chrI.4172 1.0000 11 ce6_ct_v6step13_chrI.4184 1.0000 50
ce6_ct_v6step13_chrI.4239 1.0000 41 ce6_ct_v6step13_chrI.4272 1.0000 17
ce6_ct_v6step13_chrI.4293 1.0000 13 ce6_ct_v6step13_chrI.4300 1.0000 12
ce6_ct_v6step13_chrI.4301 1.0000 13 ce6_ct_v6step13_chrI.4342 1.0000 35
ce6_ct_v6step13_chrI.4343 1.0000 35 ce6_ct_v6step13_chrI.4344 1.0000 24
ce6_ct_v6step13_chrI.4345 1.0000 36 ce6_ct_v6step13_chrI.4526 1.0000 16
ce6_ct_v6step13_chrI.4611 1.0000 23 ce6_ct_v6step13_chrI.4619 1.0000 24
ce6_ct_v6step13_chrI.4685 1.0000 31 ce6_ct_v6step13_chrI.4686 1.0000 33
ce6_ct_v6step13_chrI.4691 1.0000 13 ce6_ct_v6step13_chrI.472 1.0000 18
ce6_ct_v6step13_chrI.4728 1.0000 25 ce6_ct_v6step13_chrI.4760 1.0000 38
ce6_ct_v6step13_chrI.4778 1.0000 17 ce6_ct_v6step13_chrI.4808 1.0000 34
ce6_ct_v6step13_chrI.4940 1.0000 33 ce6_ct_v6step13_chrI.4942 1.0000 34
ce6_ct_v6step13_chrI.4958 1.0000 17 ce6_ct_v6step13_chrI.4972 1.0000 18
ce6_ct_v6step13_chrI.4984 1.0000 19 ce6_ct_v6step13_chrI.5084 1.0000 18
ce6_ct_v6step13_chrI.5104 1.0000 26 ce6_ct_v6step13_chrI.5121 1.0000 54
ce6_ct_v6step13_chrI.5273 1.0000 15 ce6_ct_v6step13_chrI.5286 1.0000 26
ce6_ct_v6step13_chrI.5308 1.0000 54 ce6_ct_v6step13_chrI.5385 1.0000 11
ce6_ct_v6step13_chrI.5415 1.0000 13 ce6_ct_v6step13_chrI.5596 1.0000 25
ce6_ct_v6step13_chrI.5617 1.0000 20 ce6_ct_v6step13_chrI.5799 1.0000 44
ce6_ct_v6step13_chrI.5816 1.0000 29 ce6_ct_v6step13_chrI.587 1.0000 24
ce6_ct_v6step13_chrI.5960 1.0000 27 ce6_ct_v6step13_chrI.6128 1.0000 12
ce6_ct_v6step13_chrI.6208 1.0000 33 ce6_ct_v6step13_chrI.6209 1.0000 36
ce6_ct_v6step13_chrI.6215 1.0000 24 ce6_ct_v6step13_chrI.6226 1.0000 38
ce6_ct_v6step13_chrI.6287 1.0000 34 ce6_ct_v6step13_chrI.64 1.0000 26
ce6_ct_v6step13_chrI.6432 1.0000 17 ce6_ct_v6step13_chrI.6557 1.0000 12
ce6_ct_v6step13_chrI.6624 1.0000 55 ce6_ct_v6step13_chrI.6720 1.0000 16
ce6_ct_v6step13_chrI.6736 1.0000 19 ce6_ct_v6step13_chrI.6790 1.0000 22
ce6_ct_v6step13_chrI.6804 1.0000 22 ce6_ct_v6step13_chrI.6853 1.0000 29
ce6_ct_v6step13_chrI.6982 1.0000 20 ce6_ct_v6step13_chrI.7045 1.0000 21
ce6_ct_v6step13_chrI.7046 1.0000 67 ce6_ct_v6step13_chrI.7047 1.0000 13
ce6_ct_v6step13_chrI.7097 1.0000 18 ce6_ct_v6step13_chrI.713 1.0000 30
ce6_ct_v6step13_chrI.7276 1.0000 34 ce6_ct_v6step13_chrI.7498 1.0000 13
ce6_ct_v6step13_chrI.7499 1.0000 39 ce6_ct_v6step13_chrI.7500 1.0000 14
ce6_ct_v6step13_chrI.7529 1.0000 25 ce6_ct_v6step13_chrI.7622 1.0000 12
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ce6_ct_v6step13_chrX.3410 1.0000 34 ce6_ct_v6step13_chrX.3412 1.0000 87
ce6_ct_v6step13_chrX.3414 1.0000 16 ce6_ct_v6step13_chrX.3439 1.0000 11
ce6_ct_v6step13_chrX.3440 1.0000 30 ce6_ct_v6step13_chrX.3452 1.0000 70
ce6_ct_v6step13_chrX.3470 1.0000 23 ce6_ct_v6step13_chrX.3471 1.0000 60
ce6_ct_v6step13_chrX.3472 1.0000 21 ce6_ct_v6step13_chrX.3481 1.0000 39
ce6_ct_v6step13_chrX.3482 1.0000 53 ce6_ct_v6step13_chrX.3486 1.0000 21
ce6_ct_v6step13_chrX.3487 1.0000 26 ce6_ct_v6step13_chrX.3488 1.0000 22
ce6_ct_v6step13_chrX.3496 1.0000 14 ce6_ct_v6step13_chrX.3675 1.0000 28
ce6_ct_v6step13_chrX.3687 1.0000 37 ce6_ct_v6step13_chrX.3688 1.0000 48
ce6_ct_v6step13_chrX.3689 1.0000 26 ce6_ct_v6step13_chrX.3702 1.0000 29
ce6_ct_v6step13_chrX.3745 1.0000 54 ce6_ct_v6step13_chrX.3746 1.0000 15
ce6_ct_v6step13_chrX.3765 1.0000 73 ce6_ct_v6step13_chrX.3766 1.0000 23
ce6_ct_v6step13_chrX.3838 1.0000 26 ce6_ct_v6step13_chrX.3872 1.0000 53
ce6_ct_v6step13_chrX.3874 1.0000 35 ce6_ct_v6step13_chrX.3875 1.0000 22
ce6_ct_v6step13_chrX.3876 1.0000 15 ce6_ct_v6step13_chrX.39 1.0000 25
ce6_ct_v6step13_chrX.3906 1.0000 67 ce6_ct_v6step13_chrX.394 1.0000 47
ce6_ct_v6step13_chrX.40 1.0000 20 ce6_ct_v6step13_chrX.4038 1.0000 109
ce6_ct_v6step13_chrX.4046 1.0000 52 ce6_ct_v6step13_chrX.4049 1.0000 28
ce6_ct_v6step13_chrX.4074 1.0000 30 ce6_ct_v6step13_chrX.41 1.0000 15
ce6_ct_v6step13_chrX.4130 1.0000 24 ce6_ct_v6step13_chrX.4155 1.0000 120
ce6_ct_v6step13_chrX.4185 1.0000 33 ce6_ct_v6step13_chrX.4205 1.0000 51
ce6_ct_v6step13_chrX.4206 1.0000 29 ce6_ct_v6step13_chrX.4214 1.0000 14
ce6_ct_v6step13_chrX.4251 1.0000 29 ce6_ct_v6step13_chrX.4291 1.0000 10
ce6_ct_v6step13_chrX.4292 1.0000 60 ce6_ct_v6step13_chrX.4328 1.0000 16
ce6_ct_v6step13_chrX.4332 1.0000 44 ce6_ct_v6step13_chrX.4422 1.0000 32
ce6_ct_v6step13_chrX.4470 1.0000 24 ce6_ct_v6step13_chrX.4471 1.0000 44
ce6_ct_v6step13_chrX.4472 1.0000 17 ce6_ct_v6step13_chrX.4473 1.0000 35
ce6_ct_v6step13_chrX.4500 1.0000 42 ce6_ct_v6step13_chrX.4531 1.0000 20
ce6_ct_v6step13_chrX.4532 1.0000 17 ce6_ct_v6step13_chrX.4533 1.0000 24
ce6_ct_v6step13_chrX.4566 1.0000 47 ce6_ct_v6step13_chrX.4568 1.0000 96
ce6_ct_v6step13_chrX.4587 1.0000 30 ce6_ct_v6step13_chrX.4588 1.0000 52
ce6_ct_v6step13_chrX.4717 1.0000 22 ce6_ct_v6step13_chrX.4805 1.0000 34
ce6_ct_v6step13_chrX.4844 1.0000 16 ce6_ct_v6step13_chrX.4845 1.0000 23
ce6_ct_v6step13_chrX.487 1.0000 25 ce6_ct_v6step13_chrX.5016 1.0000 15
ce6_ct_v6step13_chrX.5021 1.0000 28 ce6_ct_v6step13_chrX.5022 1.0000 43
ce6_ct_v6step13_chrX.503 1.0000 15 ce6_ct_v6step13_chrX.5091 1.0000 17
ce6_ct_v6step13_chrX.5095 1.0000 159 ce6_ct_v6step13_chrX.51 1.0000 38
ce6_ct_v6step13_chrX.5116 1.0000 36 ce6_ct_v6step13_chrX.52 1.0000 11
ce6_ct_v6step13_chrX.5232 1.0000 12 ce6_ct_v6step13_chrX.5233 1.0000 52
ce6_ct_v6step13_chrX.5270 1.0000 45 ce6_ct_v6step13_chrX.5283 1.0000 88
ce6_ct_v6step13_chrX.5285 1.0000 20 ce6_ct_v6step13_chrX.53 1.0000 29
ce6_ct_v6step13_chrX.5335 1.0000 24 ce6_ct_v6step13_chrX.5364 1.0000 20
ce6_ct_v6step13_chrX.5365 1.0000 79 ce6_ct_v6step13_chrX.5366 1.0000 40
ce6_ct_v6step13_chrX.5408 1.0000 42 ce6_ct_v6step13_chrX.5409 1.0000 58
ce6_ct_v6step13_chrX.5434 1.0000 26 ce6_ct_v6step13_chrX.5444 1.0000 36
ce6_ct_v6step13_chrX.5445 1.0000 71 ce6_ct_v6step13_chrX.5493 1.0000 78
ce6_ct_v6step13_chrX.5513 1.0000 19 ce6_ct_v6step13_chrX.5517 1.0000 113
ce6_ct_v6step13_chrX.5518 1.0000 66 ce6_ct_v6step13_chrX.5519 1.0000 27
ce6_ct_v6step13_chrX.5520 1.0000 13 ce6_ct_v6step13_chrX.5521 1.0000 31
ce6_ct_v6step13_chrX.5522 1.0000 64 ce6_ct_v6step13_chrX.5523 1.0000 9
ce6_ct_v6step13_chrX.5524 1.0000 53 ce6_ct_v6step13_chrX.5526 1.0000 17
ce6_ct_v6step13_chrX.5544 1.0000 58 ce6_ct_v6step13_chrX.5568 1.0000 65
ce6_ct_v6step13_chrX.5577 1.0000 46 ce6_ct_v6step13_chrX.5592 1.0000 97
ce6_ct_v6step13_chrX.56 1.0000 27 ce6_ct_v6step13_chrX.5605 1.0000 24
ce6_ct_v6step13_chrX.5612 1.0000 160 ce6_ct_v6step13_chrX.5712 1.0000 18
ce6_ct_v6step13_chrX.5750 1.0000 14 ce6_ct_v6step13_chrX.5772 1.0000 19
ce6_ct_v6step13_chrX.5791 1.0000 31 ce6_ct_v6step13_chrX.5792 1.0000 77
ce6_ct_v6step13_chrX.5793 1.0000 34 ce6_ct_v6step13_chrX.5829 1.0000 30
ce6_ct_v6step13_chrX.5830 1.0000 25 ce6_ct_v6step13_chrX.5839 1.0000 28
ce6_ct_v6step13_chrX.5845 1.0000 51 ce6_ct_v6step13_chrX.5890 1.0000 39
ce6_ct_v6step13_chrX.59 1.0000 14 ce6_ct_v6step13_chrX.5925 1.0000 20
ce6_ct_v6step13_chrX.5947 1.0000 107 ce6_ct_v6step13_chrX.5993 1.0000 20
ce6_ct_v6step13_chrX.6018 1.0000 101 ce6_ct_v6step13_chrX.6019 1.0000 19
ce6_ct_v6step13_chrX.6026 1.0000 42 ce6_ct_v6step13_chrX.6134 1.0000 29
ce6_ct_v6step13_chrX.6183 1.0000 42 ce6_ct_v6step13_chrX.6184 1.0000 67
ce6_ct_v6step13_chrX.6185 1.0000 42 ce6_ct_v6step13_chrX.6186 1.0000 17
ce6_ct_v6step13_chrX.6282 1.0000 12 ce6_ct_v6step13_chrX.6283 1.0000 25
ce6_ct_v6step13_chrX.6294 1.0000 37 ce6_ct_v6step13_chrX.6387 1.0000 32
ce6_ct_v6step13_chrX.6492 1.0000 26 ce6_ct_v6step13_chrX.6511 1.0000 43
ce6_ct_v6step13_chrX.6512 1.0000 31 ce6_ct_v6step13_chrX.6612 1.0000 15
ce6_ct_v6step13_chrX.6741 1.0000 60 ce6_ct_v6step13_chrX.6772 1.0000 69
ce6_ct_v6step13_chrX.6773 1.0000 17 ce6_ct_v6step13_chrX.6774 1.0000 54
ce6_ct_v6step13_chrX.6775 1.0000 23 ce6_ct_v6step13_chrX.6782 1.0000 14
ce6_ct_v6step13_chrX.6783 1.0000 13 ce6_ct_v6step13_chrX.6784 1.0000 28
ce6_ct_v6step13_chrX.6789 1.0000 58 ce6_ct_v6step13_chrX.6796 1.0000 17
ce6_ct_v6step13_chrX.6823 1.0000 39 ce6_ct_v6step13_chrX.6836 1.0000 20
ce6_ct_v6step13_chrX.6847 1.0000 66 ce6_ct_v6step13_chrX.6861 1.0000 69
ce6_ct_v6step13_chrX.6862 1.0000 36 ce6_ct_v6step13_chrX.6866 1.0000 36
ce6_ct_v6step13_chrX.6922 1.0000 18 ce6_ct_v6step13_chrX.6943 1.0000 33
ce6_ct_v6step13_chrX.6972 1.0000 36 ce6_ct_v6step13_chrX.7045 1.0000 89
ce6_ct_v6step13_chrX.7085 1.0000 45 ce6_ct_v6step13_chrX.7087 1.0000 29
ce6_ct_v6step13_chrX.7120 1.0000 15 ce6_ct_v6step13_chrX.7121 1.0000 21
ce6_ct_v6step13_chrX.7126 1.0000 35 ce6_ct_v6step13_chrX.7192 1.0000 13
ce6_ct_v6step13_chrX.7291 1.0000 21 ce6_ct_v6step13_chrX.7341 1.0000 120
ce6_ct_v6step13_chrX.7342 1.0000 57 ce6_ct_v6step13_chrX.7448 1.0000 23
ce6_ct_v6step13_chrX.7467 1.0000 26 ce6_ct_v6step13_chrX.7469 1.0000 15
ce6_ct_v6step13_chrX.7485 1.0000 66 ce6_ct_v6step13_chrX.7486 1.0000 126
ce6_ct_v6step13_chrX.7496 1.0000 29 ce6_ct_v6step13_chrX.7565 1.0000 55
ce6_ct_v6step13_chrX.7566 1.0000 26 ce6_ct_v6step13_chrX.7585 1.0000 34
ce6_ct_v6step13_chrX.7586 1.0000 55 ce6_ct_v6step13_chrX.7593 1.0000 57
ce6_ct_v6step13_chrX.7630 1.0000 32 ce6_ct_v6step13_chrX.7633 1.0000 78
ce6_ct_v6step13_chrX.7634 1.0000 33 ce6_ct_v6step13_chrX.7642 1.0000 105
ce6_ct_v6step13_chrX.7657 1.0000 26 ce6_ct_v6step13_chrX.7745 1.0000 51
ce6_ct_v6step13_chrX.7755 1.0000 68 ce6_ct_v6step13_chrX.7781 1.0000 83
ce6_ct_v6step13_chrX.78 1.0000 39 ce6_ct_v6step13_chrX.7827 1.0000 20
ce6_ct_v6step13_chrX.7828 1.0000 11 ce6_ct_v6step13_chrX.7842 1.0000 57
ce6_ct_v6step13_chrX.7935 1.0000 101 ce6_ct_v6step13_chrX.7940 1.0000 24
ce6_ct_v6step13_chrX.7948 1.0000 27 ce6_ct_v6step13_chrX.7989 1.0000 46
ce6_ct_v6step13_chrX.8039 1.0000 52 ce6_ct_v6step13_chrX.8108 1.0000 28
ce6_ct_v6step13_chrX.8118 1.0000 10 ce6_ct_v6step13_chrX.8189 1.0000 13
ce6_ct_v6step13_chrX.8207 1.0000 21 ce6_ct_v6step13_chrX.8230 1.0000 36
ce6_ct_v6step13_chrX.8307 1.0000 17 ce6_ct_v6step13_chrX.8352 1.0000 22
ce6_ct_v6step13_chrX.8368 1.0000 10 ce6_ct_v6step13_chrX.8441 1.0000 155
ce6_ct_v6step13_chrX.8455 1.0000 27 ce6_ct_v6step13_chrX.8551 1.0000 33
ce6_ct_v6step13_chrX.8555 1.0000 24 ce6_ct_v6step13_chrX.8556 1.0000 47
ce6_ct_v6step13_chrX.8577 1.0000 53 ce6_ct_v6step13_chrX.8595 1.0000 27
ce6_ct_v6step13_chrX.8629 1.0000 43 ce6_ct_v6step13_chrX.8630 1.0000 37
ce6_ct_v6step13_chrX.8649 1.0000 21 ce6_ct_v6step13_chrX.87 1.0000 14
ce6_ct_v6step13_chrX.8739 1.0000 22 ce6_ct_v6step13_chrX.88 1.0000 29
ce6_ct_v6step13_chrX.882 1.0000 28 ce6_ct_v6step13_chrX.887 1.0000 20
ce6_ct_v6step13_chrX.888 1.0000 15 ce6_ct_v6step13_chrX.889 1.0000 16
ce6_ct_v6step13_chrX.8928 1.0000 25 ce6_ct_v6step13_chrX.8929 1.0000 41
ce6_ct_v6step13_chrX.8959 1.0000 41 ce6_ct_v6step13_chrX.9110 1.0000 44
ce6_ct_v6step13_chrX.9117 1.0000 23 ce6_ct_v6step13_chrX.9142 1.0000 11
ce6_ct_v6step13_chrX.9228 1.0000 19 ce6_ct_v6step13_chrX.933 1.0000 27
ce6_ct_v6step13_chrX.9333 1.0000 19 ce6_ct_v6step13_chrX.9351 1.0000 25
ce6_ct_v6step13_chrX.9460 1.0000 15 ce6_ct_v6step13_chrX.9465 1.0000 21
ce6_ct_v6step13_chrX.9507 1.0000 18 ce6_ct_v6step13_chrX.9541 1.0000 44
ce6_ct_v6step13_chrX.9550 1.0000 11 ce6_ct_v6step13_chrX.9604 1.0000 81
ce6_ct_v6step13_chrX.9605 1.0000 59 ce6_ct_v6step13_chrX.9609 1.0000 18
ce6_ct_v6step13_chrX.9610 1.0000 26 ce6_ct_v6step13_chrX.9611 1.0000 59
ce6_ct_v6step13_chrX.9640 1.0000 24 ce6_ct_v6step13_chrX.9641 1.0000 62
ce6_ct_v6step13_chrX.9720 1.0000 19 ce6_ct_v6step13_chrX.9814 1.0000 47
ce6_ct_v6step13_chrX.9837 1.0000 27 ce6_ct_v6step13_chrX.9913 1.0000 92
ce6_ct_v6step13_chrX.9941 1.0000 23 ce6_ct_v6step13_chrX.9955 1.0000 58
ce6_ct_v6step13_chrX.9956 1.0000 25
COMMAND LINE SUMMARY 
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme ../phastv6_official_filt2_min8nt.fa -o ../off_filt2_mots.m1d.dir -dna -mod anr -nmotifs 50 -evt 0.05 -minw 6 -maxw 18 -bfile ../ce6_bg.meme.markov1.txt -revcomp -maxsize 200000
model: mod= anr nmotifs= 50 evt= 0.05
object function= E-value of product of p-values
width: minw= 6 maxw= 18 minic= 0.00
width: wg= 11 ws= 1 endgaps= yes
nsites: minsites= 2 maxsites= 50 wnsites= 0.8
theta: prob= 1 spmap= uni spfuzz= 0.5
em: prior= dirichlet b= 0.01 maxiter= 50
distance= 1e-05
data: n= 77628 N= 2671
strands: + -
sample: seed= 0 seqfrac= 1
Letter frequencies in dataset:
A 0.310 C 0.190 G 0.190 T 0.310
Background letter frequencies (from ../ce6_bg.meme.markov1.txt):
A 0.339 C 0.162 G 0.162 T 0.339
P N
MOTIF 1 width = 11 sites = 50 llr = 810 E-value = 3.4e-140
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
20.6 (bits)
Relative Entropy
23.4 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrV.2409 + 1 3.82e-08 T CTCTGCGTCTC T
ce6_ct_v6step13_chrV.2408 - 2 3.82e-08 CTCTGCGTCTC TC
ce6_ct_v6step13_chrV.2218 - 0 3.82e-08 GATCTGGTTT CTCTGCGTCTC
ce6_ct_v6step13_chrV.15065 - 1 3.82e-08 GT CTCTGCGTCTC T
ce6_ct_v6step13_chrV.15000 + 0 3.82e-08 CTCTGCGTCTC T
ce6_ct_v6step13_chrV.14041 + 0 3.82e-08 CTCTGCGTCTC CT
ce6_ct_v6step13_chrV.13950 - 3 3.82e-08 CTCTGCGTCTC TCC
ce6_ct_v6step13_chrIV.6105 - 9 3.82e-08 TCTGTTTTTT CTCTGCGTCTC TTCATCCCA
ce6_ct_v6step13_chrIV.5473 + 1 3.82e-08 T CTCTGCGTCTC
ce6_ct_v6step13_chrIV.4093 - 25 3.82e-08 T CTCTGCGTCTC TTCGTCTTCA
ce6_ct_v6step13_chrIV.2417 + 1 3.82e-08 T CTCTGCGTCTC T
ce6_ct_v6step13_chrIV.2405 - 7 3.82e-08 T CTCTGCGTCTC TTCGTCT
ce6_ct_v6step13_chrIV.14863 - 9 3.82e-08 TTTATT CTCTGCGTCTC TCCCTCCCT
ce6_ct_v6step13_chrIV.1075 + 1 3.82e-08 T CTCTGCGTCTC TCACTCTTAC
ce6_ct_v6step13_chrIII.9882 - 5 3.82e-08 TTATTTGT CTCTGCGTCTC TCAAA
ce6_ct_v6step13_chrIII.7713 + 6 3.82e-08 ATTTAT CTCTGCGTCTC
ce6_ct_v6step13_chrIII.3115 - 8 3.82e-08 TTCTCTGTTT CTCTGCGTCTC TCATCTCT
ce6_ct_v6step13_chrIII.2065 - 4 3.82e-08 CAATTTAACT CTCTGCGTCTC TCAC
ce6_ct_v6step13_chrIII.1618 - 12 3.82e-08 ATTT CTCTGCGTCTC TCGCTCTCTC
ce6_ct_v6step13_chrIII.15187 - 8 3.82e-08 GCTT CTCTGCGTCTC TCGATTTC
ce6_ct_v6step13_chrIII.14707 - 0 3.82e-08 TTT CTCTGCGTCTC
ce6_ct_v6step13_chrIII.14661 - 0 3.82e-08 TGTTTTT CTCTGCGTCTC
ce6_ct_v6step13_chrIII.14239 - 19 3.82e-08 T CTCTGCGTCTC TTCCCACTAC
ce6_ct_v6step13_chrIII.14088 - 20 3.82e-08 T CTCTGCGTCTC TCAAATCCCA
ce6_ct_v6step13_chrIII.14083 - 3 3.82e-08 CTGATTT CTCTGCGTCTC TTC
ce6_ct_v6step13_chrIII.12630 + 15 3.82e-08 ATAGACAATT CTCTGCGTCTC TC
ce6_ct_v6step13_chrII.2814 - 18 3.82e-08 AT CTCTGCGTCTC TTCATCTCCC
ce6_ct_v6step13_chrII.1726 + 2 3.82e-08 TT CTCTGCGTCTC TCC
ce6_ct_v6step13_chrII.12438 + 3 3.82e-08 TTT CTCTGCGTCTC CAC
ce6_ct_v6step13_chrI.5084 - 3 3.82e-08 TTTT CTCTGCGTCTC TTC
ce6_ct_v6step13_chrI.15484 + 4 3.82e-08 ATTT CTCTGCGTCTC TCAC
ce6_ct_v6step13_chrI.13925 + 5 3.82e-08 TGTTT CTCTGCGTCTC
ce6_ct_v6step13_chrI.13554 - 4 3.82e-08 T CTCTGCGTCTC TCAC
ce6_ct_v6step13_chrI.13395 + 20 3.82e-08 TTCTCTGGCC CTCTGCGTCTC TTCT
ce6_ct_v6step13_chrI.1188 + 1 3.82e-08 T CTCTGCGTCTC T
ce6_ct_v6step13_chrV.7461 + 3 7.64e-08 AGT GTCTGCGTCTC ATGTATTATT
ce6_ct_v6step13_chrV.687 - 1 7.64e-08 GTCTGCGTCTC T
ce6_ct_v6step13_chrV.14731 + 0 7.64e-08 GTCTGCGTCTC T
ce6_ct_v6step13_chrIV.9138 - 0 7.64e-08 TCTAGGACT GTCTGCGTCTC
ce6_ct_v6step13_chrIV.1563 + 19 7.64e-08 GTCTCTAACT GTCTGCGTCTC TC
ce6_ct_v6step13_chrIV.15505 - 1 7.64e-08 CTCTAGAT GTCTGCGTCTC T
ce6_ct_v6step13_chrIII.442 - 21 7.64e-08 GTCTGCGTCTC TCCGGCATTC
ce6_ct_v6step13_chrIII.2669 - 1 7.64e-08 GTCTGCGTCTC T
ce6_ct_v6step13_chrIII.13864 + 27 7.64e-08 CTGTTTCACC GTCTGCGTCTC CACAAATCAC
ce6_ct_v6step13_chrIII.13104 - 1 7.64e-08 T GTCTGCGTCTC T
ce6_ct_v6step13_chrI.14829 - 19 7.64e-08 GGT GTCTGCGTCTC TCTAATTTGC
ce6_ct_v6step13_chrI.13974 - 0 7.64e-08 TT GTCTGCGTCTC
ce6_ct_v6step13_chrI.13846 - 15 7.64e-08 T GTCTGCGTCTC TCGAAATGCC
ce6_ct_v6step13_chrI.2764 - 0 9.48e-08 CTTCTGTGTG CGCTGCGTCTC
ce6_ct_v6step13_chrIII.15031 - 5 3.82e-07 TGCAAAATTA CGCTCCGCCTC TTTTT
Motif 1 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrV.2409 3.82e-08
+1
ce6_ct_v6step13_chrV.2408 3.82e-08
-1
ce6_ct_v6step13_chrV.2218 3.82e-08
-1
ce6_ct_v6step13_chrV.15065 3.82e-08
-1
ce6_ct_v6step13_chrV.15000 3.82e-08
+1
ce6_ct_v6step13_chrV.14041 3.82e-08
+1
ce6_ct_v6step13_chrV.13950 3.82e-08
-1
ce6_ct_v6step13_chrIV.6105 3.82e-08
-1
ce6_ct_v6step13_chrIV.5473 3.82e-08
+1
ce6_ct_v6step13_chrIV.4093 3.82e-08
-1
ce6_ct_v6step13_chrIV.2417 3.82e-08
+1
ce6_ct_v6step13_chrIV.2405 3.82e-08
-1
ce6_ct_v6step13_chrIV.14863 3.82e-08
-1
ce6_ct_v6step13_chrIV.1075 3.82e-08
+1
ce6_ct_v6step13_chrIII.9882 3.82e-08
-1
ce6_ct_v6step13_chrIII.7713 3.82e-08
+1
ce6_ct_v6step13_chrIII.3115 3.82e-08
-1
ce6_ct_v6step13_chrIII.2065 3.82e-08
-1
ce6_ct_v6step13_chrIII.1618 3.82e-08
-1
ce6_ct_v6step13_chrIII.15187 3.82e-08
-1
ce6_ct_v6step13_chrIII.14707 3.82e-08
-1
ce6_ct_v6step13_chrIII.14661 3.82e-08
-1
ce6_ct_v6step13_chrIII.14239 3.82e-08
-1
ce6_ct_v6step13_chrIII.14088 3.82e-08
-1
ce6_ct_v6step13_chrIII.14083 3.82e-08
-1
ce6_ct_v6step13_chrIII.12630 3.82e-08
+1
ce6_ct_v6step13_chrII.2814 3.82e-08
-1
ce6_ct_v6step13_chrII.1726 3.82e-08
+1
ce6_ct_v6step13_chrII.12438 3.82e-08
+1
ce6_ct_v6step13_chrI.5084 3.82e-08
-1
ce6_ct_v6step13_chrI.15484 3.82e-08
+1
ce6_ct_v6step13_chrI.13925 3.82e-08
+1
ce6_ct_v6step13_chrI.13554 3.82e-08
-1
ce6_ct_v6step13_chrI.13395 3.82e-08
+1
ce6_ct_v6step13_chrI.1188 3.82e-08
+1
ce6_ct_v6step13_chrV.7461 7.64e-08
+1
ce6_ct_v6step13_chrV.687 7.64e-08
-1
ce6_ct_v6step13_chrV.14731 7.64e-08
+1
ce6_ct_v6step13_chrIV.9138 7.64e-08
-1
ce6_ct_v6step13_chrIV.1563 7.64e-08
+1
ce6_ct_v6step13_chrIV.15505 7.64e-08
-1
ce6_ct_v6step13_chrIII.442 7.64e-08
-1
ce6_ct_v6step13_chrIII.2669 7.64e-08
-1
ce6_ct_v6step13_chrIII.13864 7.64e-08
+1
ce6_ct_v6step13_chrIII.13104 7.64e-08
-1
ce6_ct_v6step13_chrI.14829 7.64e-08
-1
ce6_ct_v6step13_chrI.13974 7.64e-08
-1
ce6_ct_v6step13_chrI.13846 7.64e-08
-1
ce6_ct_v6step13_chrI.2764 9.48e-08
-1
ce6_ct_v6step13_chrIII.15031 3.82e-07
-1
SCALE
| | |
1 25 50
Motif 1 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 1 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 1 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 1 regular-expression
[CG]TCTGCGTCTC
Time 1518.48 secs.
P N
MOTIF 2 width = 15 sites = 50 llr = 803 E-value = 6.0e-131
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
18.7 (bits)
Relative Entropy
23.2 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrIV.2002 - 0 3.66e-10 CGGACTTT CGTGGCGGGACCCAA
ce6_ct_v6step13_chrIV.1424 - 1 3.66e-10 CGTGGCGGGACCCAA A
ce6_ct_v6step13_chrII.14095 + 1 3.66e-10 T CGTGGCGGGACCCAA A
ce6_ct_v6step13_chrV.1722 + 5 8.77e-10 CAAAA AGTGGGCGGAGCCTA ACA
ce6_ct_v6step13_chrIV.53 - 6 8.77e-10 A AGTGGGCGGAGCCTA TCCGGA
ce6_ct_v6step13_chrIV.38 + 4 8.77e-10 AAAA AGTGGGCGGAGCCTA AATC
ce6_ct_v6step13_chrIV.15812 - 3 8.77e-10 A AGTGGGCGGAGCCTA AAA
ce6_ct_v6step13_chrIII.989 - 0 8.77e-10 TTTTTCTAAA AGTGGGCGGAGCCTA
ce6_ct_v6step13_chrIII.4282 - 1 8.77e-10 TCAGGCAAAA AGTGGGCGGAGCCTA G
ce6_ct_v6step13_chrIII.2653 - 1 8.77e-10 AAA AGTGGGCGGAGCCTA A
ce6_ct_v6step13_chrII.2029 + 14 8.77e-10 AATTTCCAAA AGTGGGCGGAGCCTA
ce6_ct_v6step13_chrII.13591 - 4 8.77e-10 AAAGCCAATA AGTGGGCGGAGCCTA AAAT
ce6_ct_v6step13_chrIV.3135 + 13 3.48e-09 TGATTGTTTT CGTGGCGAGACCCAA AAAAACTCGA
ce6_ct_v6step13_chrIV.1425 - 5 3.48e-09 TGGATTTT CGTGGCGAGACCCAA AAAAA
ce6_ct_v6step13_chrIV.11548 - 1 3.48e-09 T CGTGGCGAGACCCAA C
ce6_ct_v6step13_chrIII.13008 - 22 3.48e-09 AT CGTGGCGAGACCCAA AGAAATGGCG
ce6_ct_v6step13_chrI.13699 - 3 3.48e-09 GAAATTATTT CGTGGCGAGACCCAA AAA
ce6_ct_v6step13_chrIV.1423 + 9 9.47e-09 TAAGGTTTT CGTGGTGGGACCCAA
ce6_ct_v6step13_chrIII.2545 + 3 9.47e-09 TTT CGTGGTGGGACCCAA AATC
ce6_ct_v6step13_chrIV.6868 - 3 1.36e-08 A AATGGGCGGAGCCTA TTT
ce6_ct_v6step13_chrIV.15807 + 1 1.36e-08 A AATGGGCGGAGCCTA AATTTTCAAA
ce6_ct_v6step13_chrIII.13991 + 3 1.36e-08 AGA AATGGGCGGAGCCTA ATT
ce6_ct_v6step13_chrII.13313 - 2 1.36e-08 ACCAAAA TGTGGGCGGAGCCTA AT
ce6_ct_v6step13_chrII.13312 - 4 1.36e-08 CGAA AATGGGCGGAGCCTA ATTT
ce6_ct_v6step13_chrI.2864 + 7 1.36e-08 AGAAAAT CGTGGCGGGACCTGA TTTTTCT
ce6_ct_v6step13_chrI.13235 - 0 1.36e-08 CAAGA AATGGGCGGAGCCTA
ce6_ct_v6step13_chrIV.14221 - 15 1.49e-08 T CGTGGCGAGACCCGC TACGGAGAGA
ce6_ct_v6step13_chrIV.2670 + 0 1.63e-08 CGTGGCGGGACCCAT AATTTC
ce6_ct_v6step13_chrIII.1364 - 4 1.98e-08 TTTT TGTGGCGGGACCCAA AAAT
ce6_ct_v6step13_chrIII.1278 + 1 1.98e-08 T CGTTGCGGGACCCGA AAAAA
ce6_ct_v6step13_chrIV.2003 - 1 2.66e-08 TGTAGTGTTT CGCGGTGGGACCCAA A
ce6_ct_v6step13_chrI.14121 - 19 3.13e-08 CCAAA AGTGGGCGGAGCTGA AATTGAAAGT
ce6_ct_v6step13_chrIII.1320 - 0 3.40e-08 CCCAAGAATT CGCGGCGGGACCTAA
ce6_ct_v6step13_chrIII.8324 - 39 3.69e-08 AATGCCTCGT CGCGGCGAGACCCGC GTCTGACTAC
ce6_ct_v6step13_chrII.14096 + 36 3.69e-08 TTTAGTTAAT CGCGGCGAGACCCGC CACACTTTGT
ce6_ct_v6step13_chrIV.365 + 2 4.38e-08 AT CGTGGCGAGACCCTT
ce6_ct_v6step13_chrIII.13524 + 1 4.38e-08 T CGTGGTGAGACCCAA
ce6_ct_v6step13_chrIII.916 + 2 4.80e-08 AA AGTGGGTGGAGCCTA G
ce6_ct_v6step13_chrI.8272 + 3 5.73e-08 AAA AGTGGGCGGAGCTTC GACTTGT
ce6_ct_v6step13_chrIV.15805 + 2 6.25e-08 AA AGGGGGCGGAGCCTG AAAA
ce6_ct_v6step13_chrIII.14225 - 4 6.76e-08 CGCACGGAAA AAGGGGCGGAGCCTA ATTT
ce6_ct_v6step13_chrIII.13993 - 6 7.38e-08 CCAAGA AATGGGCGGGGCCTA ATTTTT
ce6_ct_v6step13_chrIII.13561 - 4 1.21e-07 T CGCTGCGAGACCCTA AAAA
ce6_ct_v6step13_chrV.14313 + 2 1.30e-07 AA AGTGGGCGGAGCTTG TT
ce6_ct_v6step13_chrII.15088 - 8 1.41e-07 A AATGGGCGGAGCTTA TTTGGACA
ce6_ct_v6step13_chrII.12272 + 19 1.77e-07 TTCGCGCGTT CGCTGCGAGACCCGA CGC
ce6_ct_v6step13_chrIII.8128 - 0 3.73e-07 AA AGTGGGCGTGGCCTA
ce6_ct_v6step13_chrV.4956 + 1 4.00e-07 T CGCTGCGAGACCCGC GCTTTCGCTG
ce6_ct_v6step13_chrIII.15858 - 4 5.23e-07 CCACAAAGTT CGTGGCGAGACACAC ATTT
ce6_ct_v6step13_chrX.5792 - 60 3.25e-06 AT CGGGGGGGGGGGGTA CCTCTAATTT
Motif 2 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrIV.2002 3.66e-10
-2
ce6_ct_v6step13_chrIV.1424 3.66e-10
-2
ce6_ct_v6step13_chrII.14095 3.66e-10
+2
ce6_ct_v6step13_chrV.1722 8.77e-10
+2
ce6_ct_v6step13_chrIV.53 8.77e-10
-2
ce6_ct_v6step13_chrIV.38 8.77e-10
+2
ce6_ct_v6step13_chrIV.15812 8.77e-10
-2
ce6_ct_v6step13_chrIII.989 8.77e-10
-2
ce6_ct_v6step13_chrIII.4282 8.77e-10
-2
ce6_ct_v6step13_chrIII.2653 8.77e-10
-2
ce6_ct_v6step13_chrII.2029 8.77e-10
+2
ce6_ct_v6step13_chrII.13591 8.77e-10
-2
ce6_ct_v6step13_chrIV.3135 3.48e-09
+2
ce6_ct_v6step13_chrIV.1425 3.48e-09
-2
ce6_ct_v6step13_chrIV.11548 3.48e-09
-2
ce6_ct_v6step13_chrIII.13008 3.48e-09
-2
ce6_ct_v6step13_chrI.13699 3.48e-09
-2
ce6_ct_v6step13_chrIV.1423 9.47e-09
+2
ce6_ct_v6step13_chrIII.2545 9.47e-09
+2
ce6_ct_v6step13_chrIV.6868 1.36e-08
-2
ce6_ct_v6step13_chrIV.15807 1.36e-08
+2
ce6_ct_v6step13_chrIII.13991 1.36e-08
+2
ce6_ct_v6step13_chrII.13313 1.36e-08
-2
ce6_ct_v6step13_chrII.13312 1.36e-08
-2
ce6_ct_v6step13_chrI.2864 1.36e-08
+2
ce6_ct_v6step13_chrI.13235 1.36e-08
-2
ce6_ct_v6step13_chrIV.14221 1.49e-08
-2
ce6_ct_v6step13_chrIV.2670 1.63e-08
+2
ce6_ct_v6step13_chrIII.1364 1.98e-08
-2
ce6_ct_v6step13_chrIII.1278 1.98e-08
+2
ce6_ct_v6step13_chrIV.2003 2.66e-08
-2
ce6_ct_v6step13_chrI.14121 3.13e-08
-2
ce6_ct_v6step13_chrIII.1320 3.40e-08
-2
ce6_ct_v6step13_chrIII.8324 3.69e-08
-2
ce6_ct_v6step13_chrII.14096 3.69e-08
+2
ce6_ct_v6step13_chrIV.365 4.38e-08
+2
ce6_ct_v6step13_chrIII.13524 4.38e-08
+2
ce6_ct_v6step13_chrIII.916 4.80e-08
+2
ce6_ct_v6step13_chrI.8272 5.73e-08
+2
ce6_ct_v6step13_chrIV.15805 6.25e-08
+2
ce6_ct_v6step13_chrIII.14225 6.76e-08
-2
ce6_ct_v6step13_chrIII.13993 7.38e-08
-2
ce6_ct_v6step13_chrIII.13561 1.21e-07
-2
ce6_ct_v6step13_chrV.14313 1.30e-07
+2
ce6_ct_v6step13_chrII.15088 1.41e-07
-2
ce6_ct_v6step13_chrII.12272 1.77e-07
+2
ce6_ct_v6step13_chrIII.8128 3.73e-07
-2
ce6_ct_v6step13_chrV.4956 4.00e-07
+2
ce6_ct_v6step13_chrIII.15858 5.23e-07
-2
ce6_ct_v6step13_chrX.5792 3.25e-06
-2
SCALE
| | | |
1 25 50 75
Motif 2 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 2 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 2 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 2 regular-expression
[CA]GTGG[GC][GC][GA]GA[CG]CC[TA]A
Time 3065.40 secs.
P N
MOTIF 3 width = 11 sites = 50 llr = 787 E-value = 3.1e-129
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
21.0 (bits)
Relative Entropy
22.7 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrX.41 - 2 7.97e-08 TG GTGGCCTAGAA AT
ce6_ct_v6step13_chrV.15356 + 4 7.97e-08 GTTG GTGGCCTAGAA ACCCAAAACT
ce6_ct_v6step13_chrV.15345 + 6 7.97e-08 AAGTTG GTGGCCTAGAA AA
ce6_ct_v6step13_chrV.14462 - 15 7.97e-08 AAGTTG GTGGCCTAGAA GCCCAAAACT
ce6_ct_v6step13_chrV.14300 - 16 7.97e-08 AAGTTG GTGGCCTAGAA ACCCGAAACT
ce6_ct_v6step13_chrIV.778 + 0 7.97e-08 GTGGCCTAGAA ATCACAAAAA
ce6_ct_v6step13_chrIV.777 - 9 7.97e-08 TG GTGGCCTAGAA ATTCAAAAA
ce6_ct_v6step13_chrIV.2269 + 3 7.97e-08 TTG GTGGCCTAGAA A
ce6_ct_v6step13_chrIV.2258 - 19 7.97e-08 TTTCCACTTG GTGGCCTAGAA ATCCCAGAAA
ce6_ct_v6step13_chrIV.2253 + 3 7.97e-08 TTG GTGGCCTAGAA ATCCAAAGGG
ce6_ct_v6step13_chrIV.2095 + 0 7.97e-08 GTGGCCTAGAA A
ce6_ct_v6step13_chrIV.1935 + 5 7.97e-08 AGTTG GTGGCCTAGAA ACAGCTAGGC
ce6_ct_v6step13_chrIV.1933 + 4 7.97e-08 TTTG GTGGCCTAGAA A
ce6_ct_v6step13_chrIV.1840 + 1 7.97e-08 G GTGGCCTAGAA AACCAAAATT
ce6_ct_v6step13_chrIV.1838 + 0 7.97e-08 GTGGCCTAGAA A
ce6_ct_v6step13_chrIII.3164 + 14 7.97e-08 TGGAAAGTTG GTGGCCTAGAA AATTAGAAAT
ce6_ct_v6step13_chrIII.1765 - 18 7.97e-08 TTTCCACTTG GTGGCCTAGAA ATCCAAAAAG
ce6_ct_v6step13_chrIII.1530 + 2 7.97e-08 TG GTGGCCTAGAA A
ce6_ct_v6step13_chrIII.1382 - 2 7.97e-08 TTTGCACCTG GTGGCCTAGAA AA
ce6_ct_v6step13_chrIII.1375 - 11 7.97e-08 TTG GTGGCCTAGAA ACCCAAATTT
ce6_ct_v6step13_chrIII.12692 - 7 7.97e-08 AATATTTTTG GTGGCCTAGAA AACTAAA
ce6_ct_v6step13_chrIII.1233 + 1 7.97e-08 G GTGGCCTAGAA ACC
ce6_ct_v6step13_chrIII.1169 + 3 7.97e-08 TTG GTGGCCTAGAA ATCC
ce6_ct_v6step13_chrII.13980 - 22 7.97e-08 AACTA GTGGCCTAGAA ATATAAATTT
ce6_ct_v6step13_chrII.13980 + 3 7.97e-08 TTG GTGGCCTAGAA ATTTATATTT
ce6_ct_v6step13_chrII.13929 + 7 7.97e-08 CTACTTG GTGGCCTAGAA AATAC
ce6_ct_v6step13_chrII.13498 - 19 7.97e-08 GTGGCCTAGAA AAGTCAAAAA
ce6_ct_v6step13_chrII.12775 - 8 7.97e-08 GCTTG GTGGCCTAGAA ACTTAAAA
ce6_ct_v6step13_chrI.713 + 1 7.97e-08 G GTGGCCTAGAA AGCACAAAAA
ce6_ct_v6step13_chrI.4239 + 17 7.97e-08 GAAAAAAAAT GTGGCCTAGAA AAAACCAGAA
ce6_ct_v6step13_chrI.3075 + 1 7.97e-08 C GTGGCCTAGAA A
ce6_ct_v6step13_chrI.2921 + 3 7.97e-08 GCC GTGGCCTAGAA AATCAAAA
ce6_ct_v6step13_chrI.2273 + 5 7.97e-08 TTTTG GTGGCCTAGAA ATGGAATTCT
ce6_ct_v6step13_chrI.2057 + 18 7.97e-08 AAAGTTTTCG GTGGCCTAGAA A
ce6_ct_v6step13_chrI.197 - 5 7.97e-08 AAAAGTTG GTGGCCTAGAA ACCCA
ce6_ct_v6step13_chrI.1949 + 6 7.97e-08 TGCCAC GTGGCCTAGAA AA
ce6_ct_v6step13_chrI.184 - 0 7.97e-08 ACGAGTTTTT GTGGCCTAGAA
ce6_ct_v6step13_chrI.1826 + 1 7.97e-08 C GTGGCCTAGAA ATCCAAAGTT
ce6_ct_v6step13_chrI.18 + 0 7.97e-08 GTGGCCTAGAA AT
ce6_ct_v6step13_chrI.14095 + 0 7.97e-08 GTGGCCTAGAA ATACAAGTGA
ce6_ct_v6step13_chrI.13344 + 2 7.97e-08 TG GTGGCCTAGAA ACCC
ce6_ct_v6step13_chrI.13342 + 11 7.97e-08 TTTCAACTTG GTGGCCTAGAA A
ce6_ct_v6step13_chrI.13275 + 0 7.97e-08 GTGGCCTAGAA ATCCAAAA
ce6_ct_v6step13_chrIII.2260 + 3 1.18e-07 TTG GTGGCCGAGAA A
ce6_ct_v6step13_chrII.13755 - 2 1.18e-07 GTGGCCGAGAA AT
ce6_ct_v6step13_chrI.2192 - 0 1.18e-07 TTCG GTGGCCGAGAA
ce6_ct_v6step13_chrI.196 - 2 1.18e-07 CAAAGTTTCT GTGGCCGAGAA AT
ce6_ct_v6step13_chrIV.2873 + 0 2.74e-07 GTGGCCTAGTA CATGGAAAAA
ce6_ct_v6step13_chrV.13569 - 2 4.06e-07 TGCACGC GTGGCCTAGTG GT
ce6_ct_v6step13_chrI.14072 + 1 4.06e-07 C GTGGCCTAGGG TTTTCCGGAA
Motif 3 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrX.41 7.97e-08
-3
ce6_ct_v6step13_chrV.15356 7.97e-08
+3
ce6_ct_v6step13_chrV.15345 7.97e-08
+3
ce6_ct_v6step13_chrV.14462 7.97e-08
-3
ce6_ct_v6step13_chrV.14300 7.97e-08
-3
ce6_ct_v6step13_chrIV.778 7.97e-08
+3
ce6_ct_v6step13_chrIV.777 7.97e-08
-3
ce6_ct_v6step13_chrIV.2269 7.97e-08
+3
ce6_ct_v6step13_chrIV.2258 7.97e-08
-3
ce6_ct_v6step13_chrIV.2253 7.97e-08
+3
ce6_ct_v6step13_chrIV.2095 7.97e-08
+3
ce6_ct_v6step13_chrIV.1935 7.97e-08
+3
ce6_ct_v6step13_chrIV.1933 7.97e-08
+3
ce6_ct_v6step13_chrIV.1840 7.97e-08
+3
ce6_ct_v6step13_chrIV.1838 7.97e-08
+3
ce6_ct_v6step13_chrIII.3164 7.97e-08
+3
ce6_ct_v6step13_chrIII.1765 7.97e-08
-3
ce6_ct_v6step13_chrIII.1530 7.97e-08
+3
ce6_ct_v6step13_chrIII.1382 7.97e-08
-3
ce6_ct_v6step13_chrIII.1375 7.97e-08
-3
ce6_ct_v6step13_chrIII.12692 7.97e-08
-3
ce6_ct_v6step13_chrIII.1233 7.97e-08
+3
ce6_ct_v6step13_chrIII.1169 7.97e-08
+3
ce6_ct_v6step13_chrII.13980 7.97e-08
+3
-3
ce6_ct_v6step13_chrII.13929 7.97e-08
+3
ce6_ct_v6step13_chrII.13498 7.97e-08
-3
ce6_ct_v6step13_chrII.12775 7.97e-08
-3
ce6_ct_v6step13_chrI.713 7.97e-08
+3
ce6_ct_v6step13_chrI.4239 7.97e-08
+3
ce6_ct_v6step13_chrI.3075 7.97e-08
+3
ce6_ct_v6step13_chrI.2921 7.97e-08
+3
ce6_ct_v6step13_chrI.2273 7.97e-08
+3
ce6_ct_v6step13_chrI.2057 7.97e-08
+3
ce6_ct_v6step13_chrI.197 7.97e-08
-3
ce6_ct_v6step13_chrI.1949 7.97e-08
+3
ce6_ct_v6step13_chrI.184 7.97e-08
-3
ce6_ct_v6step13_chrI.1826 7.97e-08
+3
ce6_ct_v6step13_chrI.18 7.97e-08
+3
ce6_ct_v6step13_chrI.14095 7.97e-08
+3
ce6_ct_v6step13_chrI.13344 7.97e-08
+3
ce6_ct_v6step13_chrI.13342 7.97e-08
+3
ce6_ct_v6step13_chrI.13275 7.97e-08
+3
ce6_ct_v6step13_chrIII.2260 1.18e-07
+3
ce6_ct_v6step13_chrII.13755 1.18e-07
-3
ce6_ct_v6step13_chrI.2192 1.18e-07
-3
ce6_ct_v6step13_chrI.196 1.18e-07
-3
ce6_ct_v6step13_chrIV.2873 2.74e-07
+3
ce6_ct_v6step13_chrV.13569 4.06e-07
-3
ce6_ct_v6step13_chrI.14072 4.06e-07
+3
SCALE
| | |
1 25
Motif 3 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 3 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 3 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 3 regular-expression
GTGGCCTAGAA
Time 4434.84 secs.
P N
MOTIF 4 width = 14 sites = 45 llr = 767 E-value = 8.7e-135
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
21.6 (bits)
Relative Entropy
24.6 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrII.14005 + 5 1.62e-10 AACGT GCAAGCGCGCTCCA TTGAGACACG
ce6_ct_v6step13_chrI.3134 + 0 1.62e-10 GCAAGCGCGCTCCA TGGAGAAA
ce6_ct_v6step13_chrX.15414 + 2 5.02e-10 AT GCAAGTGCGCTCCA CTG
ce6_ct_v6step13_chrIV.2219 - 11 5.02e-10 TTAGT GCAAGTGCGCTCCA CCGAACTTTT
ce6_ct_v6step13_chrIV.2012 + 0 5.02e-10 GCAAGTGCGCTCCA GTGATAAAA
ce6_ct_v6step13_chrIII.2478 - 20 5.02e-10 GCAAGTGCGCTCCA TTGTCAATTT
ce6_ct_v6step13_chrIII.14501 + 7 5.02e-10 AAAAATA GCAAGTGCGCTCCA GTGGACT
ce6_ct_v6step13_chrII.1292 - 9 5.02e-10 GTGAGGTTTT GCAAGTGCGCTCCA TTGAAATTT
ce6_ct_v6step13_chrI.1534 + 9 5.02e-10 ATCAACTTT GCAAGTGCGCTCCA CTGA
ce6_ct_v6step13_chrI.1171 + 1 5.02e-10 A GCAAGTGCGCTCCA TTGAGAA
ce6_ct_v6step13_chrIII.1290 - 8 8.41e-10 GCAAACGCGCTCCA CCGAACAA
ce6_ct_v6step13_chrII.4417 - 7 8.41e-10 GCAAACGCGCTCCA TCGAGAA
ce6_ct_v6step13_chrI.15654 - 16 8.41e-10 GCAAACGCGCTCCA TCGCACCAAA
ce6_ct_v6step13_chrI.14089 - 3 8.41e-10 T GCAAACGCGCTCCA ATG
ce6_ct_v6step13_chrX.9720 + 0 1.18e-09 GCAAGCGCGCTCTA TTGAA
ce6_ct_v6step13_chrIV.9729 - 6 1.18e-09 TTC GCAAGCGCGCTCTA ATGAGA
ce6_ct_v6step13_chrIII.3150 - 9 1.18e-09 A GCAAGCGCGCTCTA ATGACAATT
ce6_ct_v6step13_chrIII.2932 - 6 1.89e-09 AAATTAAAAG GCAAATGCGCTCCA TTGCAC
ce6_ct_v6step13_chrII.13134 - 6 1.89e-09 GCAAATGCGCTCCA TTGAGA
ce6_ct_v6step13_chrIII.1570 - 23 2.59e-09 T GCAAGTGCGCTCTA TGGATAATCT
ce6_ct_v6step13_chrIV.6899 - 3 3.46e-09 AATATTGACT GCAAACGCGCTCTA TTG
ce6_ct_v6step13_chrI.408 - 8 3.46e-09 TGTTTGACAT GCAAACGCGCTCTA TTGACAAA
ce6_ct_v6step13_chrI.2937 + 1 3.46e-09 A GCAAACGCGCTCTA CTGCACACAA
ce6_ct_v6step13_chrI.14090 - 8 3.46e-09 GCAAACGCGCTCTA ATGAGAAT
ce6_ct_v6step13_chrI.14943 + 8 4.02e-09 AAAATAGT GCAAGTGCGCTCCG CTGGACTC
ce6_ct_v6step13_chrV.14066 + 1 5.50e-09 G GCAAATGCGCTCTA TTGCTAAT
ce6_ct_v6step13_chrIV.2027 + 0 5.50e-09 GCAAATGCGCTCTA GTGATAAT
ce6_ct_v6step13_chrIV.1943 + 2 5.50e-09 AT GCAAATGCGCTCTA TTGATAGTTT
ce6_ct_v6step13_chrIV.1615 + 0 5.50e-09 GCAAATGCGCTCTA CTGATAATCT
ce6_ct_v6step13_chrI.842 - 3 6.00e-09 ACAAAATAT GCAATCGCGCTCCA TTG
ce6_ct_v6step13_chrI.14549 + 2 6.66e-09 AT GCAACTGCGCTCCA C
ce6_ct_v6step13_chrIII.1106 - 6 7.07e-09 AAT GCAAGCGCGCCCCA CTGCAC
ce6_ct_v6step13_chrII.1888 - 10 1.17e-08 ATTAGTTGGA GAAAGTGCGCTCCA CTGAACTGAT
ce6_ct_v6step13_chrII.1288 - 7 1.52e-08 TTT GCAACTGCGCTCTA CTGAACT
ce6_ct_v6step13_chrIII.1823 + 1 2.75e-08 T GAAAATGCGCTCCA ATGCAA
ce6_ct_v6step13_chrV.12290 + 15 3.08e-08 AAAATCCCGG GAAAGTGCGCTCTA CCGCAATTCT
ce6_ct_v6step13_chrIII.2165 - 12 3.13e-08 CTGA GCATGCGCGCTCTA ATGAGAAAAA
ce6_ct_v6step13_chrIV.3895 - 43 3.39e-08 TAAGGA GTAAGTGCGCTCCA CCGCTCCCCG
ce6_ct_v6step13_chrIV.1107 + 2 3.69e-08 AA GCAAGCGTGCTCTA ATGAGAATTT
ce6_ct_v6step13_chrV.8801 - 49 5.22e-08 ATGACGGTCA GCAAGTGTGCTCTA TCGGCCTTCC
ce6_ct_v6step13_chrIII.2695 + 5 7.91e-08 AAAAA GCAAATTCGCTCCA TTGA
ce6_ct_v6step13_chrV.586 + 0 9.88e-08 GAAAATGCGCTCCG CTGAGAATTG
ce6_ct_v6step13_chrIII.3569 + 5 1.58e-06 GCGTC GCGGTTGCGCGCTA ATTCAAA
ce6_ct_v6step13_chrX.1327 + 22 1.65e-06 GCCATGGATG GCAGGCACGCGGCA GCGCGCGCGG
ce6_ct_v6step13_chrIV.15624 + 5 4.43e-06 GCGTT GCAGTCGCGTTGCG GTCGCGTCGC
Motif 4 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrII.14005 1.62e-10
+4
ce6_ct_v6step13_chrI.3134 1.62e-10
+4
ce6_ct_v6step13_chrX.15414 5.02e-10
+4
ce6_ct_v6step13_chrIV.2219 5.02e-10
-4
ce6_ct_v6step13_chrIV.2012 5.02e-10
+4
ce6_ct_v6step13_chrIII.2478 5.02e-10
-4
ce6_ct_v6step13_chrIII.14501 5.02e-10
+4
ce6_ct_v6step13_chrII.1292 5.02e-10
-4
ce6_ct_v6step13_chrI.1534 5.02e-10
+4
ce6_ct_v6step13_chrI.1171 5.02e-10
+4
ce6_ct_v6step13_chrIII.1290 8.41e-10
-4
ce6_ct_v6step13_chrII.4417 8.41e-10
-4
ce6_ct_v6step13_chrI.15654 8.41e-10
-4
ce6_ct_v6step13_chrI.14089 8.41e-10
-4
ce6_ct_v6step13_chrX.9720 1.18e-09
+4
ce6_ct_v6step13_chrIV.9729 1.18e-09
-4
ce6_ct_v6step13_chrIII.3150 1.18e-09
-4
ce6_ct_v6step13_chrIII.2932 1.89e-09
-4
ce6_ct_v6step13_chrII.13134 1.89e-09
-4
ce6_ct_v6step13_chrIII.1570 2.59e-09
-4
ce6_ct_v6step13_chrIV.6899 3.46e-09
-4
ce6_ct_v6step13_chrI.408 3.46e-09
-4
ce6_ct_v6step13_chrI.2937 3.46e-09
+4
ce6_ct_v6step13_chrI.14090 3.46e-09
-4
ce6_ct_v6step13_chrI.14943 4.02e-09
+4
ce6_ct_v6step13_chrV.14066 5.50e-09
+4
ce6_ct_v6step13_chrIV.2027 5.50e-09
+4
ce6_ct_v6step13_chrIV.1943 5.50e-09
+4
ce6_ct_v6step13_chrIV.1615 5.50e-09
+4
ce6_ct_v6step13_chrI.842 6.00e-09
-4
ce6_ct_v6step13_chrI.14549 6.66e-09
+4
ce6_ct_v6step13_chrIII.1106 7.07e-09
-4
ce6_ct_v6step13_chrII.1888 1.17e-08
-4
ce6_ct_v6step13_chrII.1288 1.52e-08
-4
ce6_ct_v6step13_chrIII.1823 2.75e-08
+4
ce6_ct_v6step13_chrV.12290 3.08e-08
+4
ce6_ct_v6step13_chrIII.2165 3.13e-08
-4
ce6_ct_v6step13_chrIV.3895 3.39e-08
-4
ce6_ct_v6step13_chrIV.1107 3.69e-08
+4
ce6_ct_v6step13_chrV.8801 5.22e-08
-4
ce6_ct_v6step13_chrIII.2695 7.91e-08
+4
ce6_ct_v6step13_chrV.586 9.88e-08
+4
ce6_ct_v6step13_chrIII.3569 1.58e-06
+4
ce6_ct_v6step13_chrX.1327 1.65e-06
+4
ce6_ct_v6step13_chrIV.15624 4.43e-06
+4
SCALE
| | | | | |
1 25 50 75 100 125
Motif 4 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 4 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 4 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 4 regular-expression
GCAA[GA][TC]GCGCTC[CT]A
Time 5785.37 secs.
P N
MOTIF 5 width = 15 sites = 49 llr = 619 E-value = 1.5e-054
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
12.1 (bits)
Relative Entropy
18.2 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrII.12515 - 5 4.36e-11 AAAAAAAAAA CCGCGCCGCGACCGC ATTGC
ce6_ct_v6step13_chrII.629 + 2 9.93e-11 AA CCGCGACGCGACCGC GCCGT
ce6_ct_v6step13_chrI.15443 + 0 9.93e-11 CCGCGACGCGACCGC AACGCATTCA
ce6_ct_v6step13_chrIV.2307 - 6 3.75e-10 CCGCGACGCGGCCGC GTCGCA
ce6_ct_v6step13_chrI.7799 + 0 5.96e-09 CCGCGACGCAACCGC TCGCGATCAA
ce6_ct_v6step13_chrII.974 + 1 2.19e-08 A CCGCGACGCGACACG CGACGCA
ce6_ct_v6step13_chrIII.2390 - 5 4.33e-08 TTTCAAATTT CAGACCCCCCCCCCC CCAAA
ce6_ct_v6step13_chrX.12745 - 5 5.64e-08 CGTTTGAGAT GCGCGCCTCCACCCC CAGGT
ce6_ct_v6step13_chrIV.1550 - 12 5.64e-08 GGTTCCGCGT CCGCGACCACGCACC TTCATATATA
ce6_ct_v6step13_chrX.7940 + 0 6.39e-08 CCCCCCCCCCCCCCC CCAAAATGT
ce6_ct_v6step13_chrI.2609 + 4 6.39e-08 CTGG CCGCTACGCGACCGC AACGCGTGCC
ce6_ct_v6step13_chrI.15293 - 5 9.15e-08 A CCGCGACGCACACGC AACGC
ce6_ct_v6step13_chrII.43 - 19 1.13e-07 CTTTTATAG ACGCCACGGCACCGG TGTCCTAGAG
ce6_ct_v6step13_chrX.5521 - 12 1.55e-07 CACA GCACGACCACCCCCC GACGCGGAAA
ce6_ct_v6step13_chrIII.7339 - 0 1.55e-07 TGTGCAGCGT GCGACGCGCCCCGCC
ce6_ct_v6step13_chrII.1689 - 20 1.55e-07 G ACGCGACCGCAGCGC TCCCAAAATT
ce6_ct_v6step13_chrIV.2280 - 7 1.91e-07 CGCG ACGCGACCGCAACGC GTCGAAA
ce6_ct_v6step13_chrI.11616 + 4 2.64e-07 GCAC GCGACGCGTGACCGC
ce6_ct_v6step13_chrI.1 + 6 2.64e-07 TTGTGT GCGCCGCGACTCCGC CCAC
ce6_ct_v6step13_chrX.7781 + 18 2.95e-07 TATCTTAAAG GAGGCACGCGACCGC ATCAAAGACA
ce6_ct_v6step13_chrV.8801 - 0 3.66e-07 TTGAATTAGC GCGCGAAGCCACGCC
ce6_ct_v6step13_chrII.647 - 1 3.66e-07 CGCG ACGCGACCGCGACGC A
ce6_ct_v6step13_chrI.7499 - 0 3.66e-07 CACGGTCGTA ACGCGACCGCGACGC
ce6_ct_v6step13_chrIV.6511 + 17 5.57e-07 TCCAACACCA CAACCACGACACCCC AACTTATTCA
ce6_ct_v6step13_chrIII.7607 - 94 5.57e-07 GGCTCGTTTT GCGCGCCGTCTCACC AACGGCTCCG
ce6_ct_v6step13_chrI.11433 - 16 6.14e-07 GAGACCCCTCCCCGC GAAAACCGCG
ce6_ct_v6step13_chrX.2029 - 15 6.77e-07 CTAAAACCTC CCACCCCCCCCCACG CACTGATAGC
ce6_ct_v6step13_chrIV.3669 + 33 8.17e-07 TATGCCGATT CAAACCCCCCCCCCC C
ce6_ct_v6step13_chrX.5568 + 35 1.07e-06 TGAAAAGTGA CAGCGGTGACACCCC CAATCAACGG
ce6_ct_v6step13_chrX.5612 - 30 1.68e-06 GATAGATTCC GCGCGCCGTGAGCAC GCCTACCGTT
ce6_ct_v6step13_chrX.5445 - 34 1.68e-06 CTAGTTTATG GCGCGCTCTCACACC TATCGGAATG
ce6_ct_v6step13_chrX.3229 + 4 1.68e-06 ATGG ACGCGACGGACACGC CCATTTCACG
ce6_ct_v6step13_chrV.4698 - 1 1.68e-06 AGTCGCTACG CAGACACGCGACGCG T
ce6_ct_v6step13_chrI.15202 + 6 1.68e-06 AAATTT CAGAACCCCCCCCCC CTGTTTTGAC
ce6_ct_v6step13_chrII.6260 + 49 1.84e-06 AGTTTGTGTG CCGAGAAGCGACGCC CCTTGTCTCC
ce6_ct_v6step13_chrV.14232 - 4 2.02e-06 GAGAGAGAGA GAGAGCCCAGACAGC TAGA
ce6_ct_v6step13_chrIII.7340 + 7 2.02e-06 ATGCAAA CAGGCGCGTGCCCGC GTATTTCAAA
ce6_ct_v6step13_chrX.3122 - 12 2.21e-06 ACCGCCATTC CCGACCTCCCAACGC AAACATTCCA
ce6_ct_v6step13_chrIV.7621 + 0 3.15e-06 CCGCGGCCGAAAACC AGTGATTGAT
ce6_ct_v6step13_chrIII.7339 + 23 3.43e-06 GCACGCTGCA CAGCCGCGTCGCACG CGACCCGGCT
ce6_ct_v6step13_chrX.1327 + 38 3.72e-06 ACGCGGCAGC GCGCGCGGGGACAGG CTGGGCCATA
ce6_ct_v6step13_chrII.5795 + 28 4.04e-06 GCCGCAAGAC GAGCCACGCTAACGC TGAA
ce6_ct_v6step13_chrIV.161 + 0 4.38e-06 GCGAGACCCCACACA AAAT
ce6_ct_v6step13_chrIII.11658 + 26 4.75e-06 ACCGATCAGT CCACCACCACCACCG
ce6_ct_v6step13_chrI.64 - 7 4.75e-06 ATTT TCGCGCCGAGACCAC TACAGTA
ce6_ct_v6step13_chrIII.9994 - 15 5.14e-06 ACAACGACGA CAGCGACGACGGAGG AGACGAAGAA
ce6_ct_v6step13_chrIII.1119 + 14 5.14e-06 CTGCCCGTCG GAGAGACGGGCGGCC GTCG
ce6_ct_v6step13_chrI.3583 - 0 6.50e-06 ACTTGAAATT CGGCGACGACACTCC
ce6_ct_v6step13_chrV.3312 + 51 9.61e-06 CACCACACAC ACACGACCCGGGAGC
Motif 5 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrII.12515 4.36e-11
-5
ce6_ct_v6step13_chrII.629 9.93e-11
+5
ce6_ct_v6step13_chrI.15443 9.93e-11
+5
ce6_ct_v6step13_chrIV.2307 3.75e-10
-5
ce6_ct_v6step13_chrI.7799 5.96e-09
+5
ce6_ct_v6step13_chrII.974 2.19e-08
+5
ce6_ct_v6step13_chrIII.2390 4.33e-08
-5
ce6_ct_v6step13_chrX.12745 5.64e-08
-5
ce6_ct_v6step13_chrIV.1550 5.64e-08
-5
ce6_ct_v6step13_chrX.7940 6.39e-08
+5
ce6_ct_v6step13_chrI.2609 6.39e-08
+5
ce6_ct_v6step13_chrI.15293 9.15e-08
-5
ce6_ct_v6step13_chrII.43 1.13e-07
-5
ce6_ct_v6step13_chrX.5521 1.55e-07
-5
ce6_ct_v6step13_chrIII.7339 1.55e-07
-5
+5
ce6_ct_v6step13_chrII.1689 1.55e-07
-5
ce6_ct_v6step13_chrIV.2280 1.91e-07
-5
ce6_ct_v6step13_chrI.11616 2.64e-07
+5
ce6_ct_v6step13_chrI.1 2.64e-07
+5
ce6_ct_v6step13_chrX.7781 2.95e-07
+5
ce6_ct_v6step13_chrV.8801 3.66e-07
-5
ce6_ct_v6step13_chrII.647 3.66e-07
-5
ce6_ct_v6step13_chrI.7499 3.66e-07
-5
ce6_ct_v6step13_chrIV.6511 5.57e-07
+5
ce6_ct_v6step13_chrIII.7607 5.57e-07
-5
ce6_ct_v6step13_chrI.11433 6.14e-07
-5
ce6_ct_v6step13_chrX.2029 6.77e-07
-5
ce6_ct_v6step13_chrIV.3669 8.17e-07
+5
ce6_ct_v6step13_chrX.5568 1.07e-06
+5
ce6_ct_v6step13_chrX.5612 1.68e-06
-5
ce6_ct_v6step13_chrX.5445 1.68e-06
-5
ce6_ct_v6step13_chrX.3229 1.68e-06
+5
ce6_ct_v6step13_chrV.4698 1.68e-06
-5
ce6_ct_v6step13_chrI.15202 1.68e-06
+5
ce6_ct_v6step13_chrII.6260 1.84e-06
+5
ce6_ct_v6step13_chrV.14232 2.02e-06
-5
ce6_ct_v6step13_chrIII.7340 2.02e-06
+5
ce6_ct_v6step13_chrX.3122 2.21e-06
-5
ce6_ct_v6step13_chrIV.7621 3.15e-06
+5
ce6_ct_v6step13_chrX.1327 3.72e-06
+5
ce6_ct_v6step13_chrII.5795 4.04e-06
+5
ce6_ct_v6step13_chrIV.161 4.38e-06
+5
ce6_ct_v6step13_chrIII.11658 4.75e-06
+5
ce6_ct_v6step13_chrI.64 4.75e-06
-5
ce6_ct_v6step13_chrIII.9994 5.14e-06
-5
ce6_ct_v6step13_chrIII.1119 5.14e-06
+5
ce6_ct_v6step13_chrI.3583 6.50e-06
-5
ce6_ct_v6step13_chrV.3312 9.61e-06
+5
SCALE
| | | | | | |
1 25 50 75 100 125 150
Motif 5 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 5 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 5 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 5 regular-expression
[CG][CA]G[CA][GC][AC]C[GC][CA][CG][AC]C[CA][GC]C
Time 7208.30 secs.
P N
MOTIF 6 width = 15 sites = 45 llr = 599 E-value = 4.6e-059
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
16.8 (bits)
Relative Entropy
19.2 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrV.864 + 2 8.07e-10 GA GAGAGAGAGAGAGAG A
ce6_ct_v6step13_chrV.7235 + 1 8.07e-10 A GAGAGAGAGAGAGAG AGAAA
ce6_ct_v6step13_chrIV.3624 - 8 8.07e-10 GA GAGAGAGAGAGAGAG ACTGGAGA
ce6_ct_v6step13_chrIV.2646 + 0 8.07e-10 GAGAGAGAGAGAGAG GACTA
ce6_ct_v6step13_chrII.1912 + 8 8.07e-10 TGAGCGGA GAGAGAGAGAGAGAG TGTGTGTGTG
ce6_ct_v6step13_chrI.5286 - 8 8.07e-10 AGA GAGAGAGAGAGAGAG TGCAGACA
ce6_ct_v6step13_chrIII.14240 - 3 2.08e-09 AGTGTACGA GAGGGAGAGACGCAG ACA
ce6_ct_v6step13_chrX.9814 + 32 1.42e-08 AAAGAGGCGA GAGAAAGAGAGAGAG
ce6_ct_v6step13_chrIV.4706 + 0 1.42e-08 GACACAGAGAGAGAG AGAG
ce6_ct_v6step13_chrIV.15497 - 0 1.42e-08 ATGTTGAGAG GAAAGAGAGAGAGAG
ce6_ct_v6step13_chrII.4307 + 25 1.42e-08 ACTCACTTTT GAAAGAGAGAGAGAG AG
ce6_ct_v6step13_chrI.13686 + 2 1.42e-08 GA GAAAGAGAGAGAGAG ATACGCAGAG
ce6_ct_v6step13_chrIII.7048 + 4 2.76e-08 GAGT GAGAGAGAGAGAGAA AAGTTGCCCT
ce6_ct_v6step13_chrIII.2651 - 4 2.76e-08 A GAGAGAGAGAGAGAA AAGA
ce6_ct_v6step13_chrII.5368 - 1 7.06e-08 GTGTGTGCAA GACGAAGAGACGCAG A
ce6_ct_v6step13_chrII.13309 + 12 7.06e-08 GAGTATGGGA GACGAAGAGACGCAG
ce6_ct_v6step13_chrX.5434 + 8 8.02e-08 TTTTGGGT GGAAGAGAGAGAGAG AGA
ce6_ct_v6step13_chrV.5704 + 9 8.91e-08 AGTGTGCGA GACAAAGAGACGCAG ATAACTTCTC
ce6_ct_v6step13_chrIV.16094 - 5 1.11e-07 GCGACGAAAA GGGGGAGAGAGAGCG CGCAC
ce6_ct_v6step13_chrV.3653 - 49 1.95e-07 GGAGAAAT GAGGGAGAGAAAGAC GAAAAATAGT
ce6_ct_v6step13_chrI.7824 - 0 2.47e-07 ATGGAAATGT GACGGAGGGGCGGAG
ce6_ct_v6step13_chrIII.6037 + 4 2.75e-07 GTGT GAGAGAGATAGAGAG A
ce6_ct_v6step13_chrII.10055 - 19 3.02e-07 GAAAGAGATA GAGAGAGAAAGGGGG AGAACGAAAC
ce6_ct_v6step13_chrV.8744 - 46 3.31e-07 GG GACGGACAGACGGAC ACGACCTATG
ce6_ct_v6step13_chrIII.13077 - 5 4.04e-07 GAGAGAGAGAGACGA CAGAC
ce6_ct_v6step13_chrIV.2499 + 13 4.97e-07 CAGTGTGGAG GATGAAGAGACGCAG A
ce6_ct_v6step13_chrIII.8721 + 14 4.97e-07 TAGTATACAA GATGAAGAGACGCAG A
ce6_ct_v6step13_chrIII.13517 - 2 4.97e-07 GCGGCACA GAAAAAGAGGCGGAG CC
ce6_ct_v6step13_chrII.12001 + 24 4.97e-07 GAGTGTATGA GATGAAGAGACGCAG
ce6_ct_v6step13_chrIII.8496 + 6 5.91e-07 GAGAGA GTGAGAGACACAGAG A
ce6_ct_v6step13_chrI.4972 - 0 5.91e-07 AGA GACGCAGACACGGAA
ce6_ct_v6step13_chrIV.10117 - 3 7.83e-07 TGGGTGATTC GAGAGAGAAAAAGAG AGA
ce6_ct_v6step13_chrV.2034 + 2 1.31e-06 CT GGCAGAGAGACAGCC TTGGCAATGA
ce6_ct_v6step13_chrI.12166 - 6 1.95e-06 CCTCCCCCAA GAGAGAGAAGGGCGG GGCAGG
ce6_ct_v6step13_chrIV.5406 - 5 2.11e-06 GAGACGGAGACACAA TGCAA
ce6_ct_v6step13_chrI.4685 + 15 2.27e-06 GCATTACATA GGGGCACACACGCAG C
ce6_ct_v6step13_chrIII.3427 - 5 2.44e-06 GAGAGACGCAGACAG TTAAA
ce6_ct_v6step13_chrX.13904 + 23 2.63e-06 TATTTGTGAT GAGGCGGAGGAGGAG AAGGAGGA
ce6_ct_v6step13_chrIV.14752 + 15 3.76e-06 GAGAGCACCT GAAGGCGAGAGACGC AGA
ce6_ct_v6step13_chrX.7341 - 3 4.31e-06 GAGACTCGAC GACGACGACACAGAA GAC
ce6_ct_v6step13_chrII.11655 - 3 5.97e-06 AAGATTGTAG GACACAGACAACGAG ACA
ce6_ct_v6step13_chrV.5671 + 27 7.71e-06 GTATTGAAGA CATAGAGACACAGAC
ce6_ct_v6step13_chrII.6619 + 6 1.09e-05 AAAAAA GAAGAAGAAGGAGAC GTCG
ce6_ct_v6step13_chrIV.5231 - 2 1.22e-05 CA CACACACACACACAG TT
ce6_ct_v6step13_chrIV.5815 + 16 1.29e-05 CAACGAATTA GGAGCCGACACAGAA G
Motif 6 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrV.864 8.07e-10
+6
ce6_ct_v6step13_chrV.7235 8.07e-10
+6
ce6_ct_v6step13_chrIV.3624 8.07e-10
-6
ce6_ct_v6step13_chrIV.2646 8.07e-10
+6
ce6_ct_v6step13_chrII.1912 8.07e-10
+6
ce6_ct_v6step13_chrI.5286 8.07e-10
-6
ce6_ct_v6step13_chrIII.14240 2.08e-09
-6
ce6_ct_v6step13_chrX.9814 1.42e-08
+6
ce6_ct_v6step13_chrIV.4706 1.42e-08
+6
ce6_ct_v6step13_chrIV.15497 1.42e-08
-6
ce6_ct_v6step13_chrII.4307 1.42e-08
+6
ce6_ct_v6step13_chrI.13686 1.42e-08
+6
ce6_ct_v6step13_chrIII.7048 2.76e-08
+6
ce6_ct_v6step13_chrIII.2651 2.76e-08
-6
ce6_ct_v6step13_chrII.5368 7.06e-08
-6
ce6_ct_v6step13_chrII.13309 7.06e-08
+6
ce6_ct_v6step13_chrX.5434 8.02e-08
+6
ce6_ct_v6step13_chrV.5704 8.91e-08
+6
ce6_ct_v6step13_chrIV.16094 1.11e-07
-6
ce6_ct_v6step13_chrV.3653 1.95e-07
-6
ce6_ct_v6step13_chrI.7824 2.47e-07
-6
ce6_ct_v6step13_chrIII.6037 2.75e-07
+6
ce6_ct_v6step13_chrII.10055 3.02e-07
-6
ce6_ct_v6step13_chrV.8744 3.31e-07
-6
ce6_ct_v6step13_chrIII.13077 4.04e-07
-6
ce6_ct_v6step13_chrIV.2499 4.97e-07
+6
ce6_ct_v6step13_chrIII.8721 4.97e-07
+6
ce6_ct_v6step13_chrIII.13517 4.97e-07
-6
ce6_ct_v6step13_chrII.12001 4.97e-07
+6
ce6_ct_v6step13_chrIII.8496 5.91e-07
+6
ce6_ct_v6step13_chrI.4972 5.91e-07
-6
ce6_ct_v6step13_chrIV.10117 7.83e-07
-6
ce6_ct_v6step13_chrV.2034 1.31e-06
+6
ce6_ct_v6step13_chrI.12166 1.95e-06
-6
ce6_ct_v6step13_chrIV.5406 2.11e-06
-6
ce6_ct_v6step13_chrI.4685 2.27e-06
+6
ce6_ct_v6step13_chrIII.3427 2.44e-06
-6
ce6_ct_v6step13_chrX.13904 2.63e-06
+6
ce6_ct_v6step13_chrIV.14752 3.76e-06
+6
ce6_ct_v6step13_chrX.7341 4.31e-06
-6
ce6_ct_v6step13_chrII.11655 5.97e-06
-6
ce6_ct_v6step13_chrV.5671 7.71e-06
+6
ce6_ct_v6step13_chrII.6619 1.09e-05
+6
ce6_ct_v6step13_chrIV.5231 1.22e-05
-6
ce6_ct_v6step13_chrIV.5815 1.29e-05
+6
SCALE
| | | | |
1 25 50 75 100
Motif 6 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 6 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 6 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 6 regular-expression
GA[GC][AG][GA]AGA[GC]A[GC][AG][GC]AG
Time 8695.27 secs.
P N
MOTIF 7 width = 8 sites = 50 llr = 590 E-value = 2.7e-048
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
14.7 (bits)
Relative Entropy
17.0 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrV.8870 + 55 2.07e-06 TCTCGGGTTC CTCGGCCA TTTT
ce6_ct_v6step13_chrV.2805 + 6 2.07e-06 CCGAAA CTCGGCCA GAAGATG
ce6_ct_v6step13_chrV.14118 + 4 2.07e-06 AAAC CTCGGCCA TCAGTT
ce6_ct_v6step13_chrIV.1686 - 0 2.07e-06 AAAGCGAAAA CTCGGCCA
ce6_ct_v6step13_chrIV.15760 + 2 2.07e-06 AA CTCGGCCA C
ce6_ct_v6step13_chrIII.3164 + 35 2.07e-06 AATTAGAAAT CTCGGCCA TC
ce6_ct_v6step13_chrIII.2388 + 20 2.07e-06 TTTCAATTTC CTCGGCCA
ce6_ct_v6step13_chrIII.2388 - 1 2.07e-06 AAATTGAAAA CTCGGCCA C
ce6_ct_v6step13_chrIII.13330 + 18 2.07e-06 AATTCCAAAA CTCGGCCA
ce6_ct_v6step13_chrIII.13188 - 1 2.07e-06 AACGCAAAAA CTCGGCCA G
ce6_ct_v6step13_chrII.13499 - 0 2.07e-06 AAAA CTCGGCCA
ce6_ct_v6step13_chrII.13498 - 1 2.07e-06 AAGTCAAAAA CTCGGCCA C
ce6_ct_v6step13_chrI.587 + 4 2.07e-06 AAAA CTCGGCCA CCAATTATTT
ce6_ct_v6step13_chrI.2819 - 3 2.07e-06 AAAACAAAAA CTCGGCCA CCA
ce6_ct_v6step13_chrI.13256 + 24 2.07e-06 TTCGGGAAAA CTCGGCCA
ce6_ct_v6step13_chrX.40 + 0 6.37e-06 CTAGGCCA CCAACTTCAA
ce6_ct_v6step13_chrV.15356 + 23 6.37e-06 AAACCCAAAA CTAGGCCA T
ce6_ct_v6step13_chrIV.2258 - 1 6.37e-06 ATCCCAGAAA CTAGGCCA C
ce6_ct_v6step13_chrIV.2076 + 2 6.37e-06 TT CTAGGCCA T
ce6_ct_v6step13_chrIV.2075 - 0 6.37e-06 TTTCGGTTT CTAGGCCA
ce6_ct_v6step13_chrIV.1946 - 0 6.37e-06 TTGGGTT CTAGGCCA
ce6_ct_v6step13_chrIV.1945 - 0 6.37e-06 ATAAGGGTTT CTAGGCCA
ce6_ct_v6step13_chrIV.1934 - 4 6.37e-06 ATTTGGATTC CTAGGCCA CCAA
ce6_ct_v6step13_chrIV.1930 - 0 6.37e-06 TTT CTAGGCCA
ce6_ct_v6step13_chrIV.1929 + 3 6.37e-06 TTT CTAGGCCA
ce6_ct_v6step13_chrIV.1839 + 8 6.37e-06 TTGGATTT CTAGGCCA
ce6_ct_v6step13_chrIV.1837 + 5 6.37e-06 GATTT CTAGGCCA
ce6_ct_v6step13_chrIV.1810 + 3 6.37e-06 TTT CTAGGCCA
ce6_ct_v6step13_chrIII.951 - 0 6.37e-06 TTTTGGTTTT CTAGGCCA
ce6_ct_v6step13_chrIII.1377 + 5 6.37e-06 GGTCT CTAGGCCA TCA
ce6_ct_v6step13_chrIII.13330 - 0 6.37e-06 TTTTGGAATT CTAGGCCA
ce6_ct_v6step13_chrIII.13188 + 21 6.37e-06 TTTGCGTTTT CTAGGCCA
ce6_ct_v6step13_chrII.3039 - 43 6.37e-06 GTTTT CTAGGCCA TGGACTAGGA
ce6_ct_v6step13_chrII.1917 - 4 6.37e-06 T CTAGGCCA TCTA
ce6_ct_v6step13_chrII.14861 - 2 6.37e-06 CTAGGCCA CC
ce6_ct_v6step13_chrI.777 - 1 6.37e-06 GCTTGGGTTT CTAGGCCA T
ce6_ct_v6step13_chrI.1827 - 0 6.37e-06 TTT CTAGGCCA
ce6_ct_v6step13_chrI.1825 - 52 6.37e-06 GGAATTT CTAGGCCA TGAATTGTTA
ce6_ct_v6step13_chrI.14086 - 0 6.37e-06 TGGATTT CTAGGCCA
ce6_ct_v6step13_chrI.14074 - 1 6.37e-06 TTGCGAGAAA CTAGGCCA C
ce6_ct_v6step13_chrI.14073 - 2 6.37e-06 CTTGTAAAAT CTAGGCCA CG
ce6_ct_v6step13_chrI.14072 + 26 6.37e-06 CCGGAAAAAA CTAGGCCA CCAAA
ce6_ct_v6step13_chrI.13340 + 4 6.37e-06 AAAA CTAGGCCA CC
ce6_ct_v6step13_chrI.13339 - 0 6.37e-06 TT CTAGGCCA
ce6_ct_v6step13_chrI.13272 + 0 6.37e-06 CTAGGCCA CCAAAACT
ce6_ct_v6step13_chrI.13256 - 2 6.37e-06 CCCGAATTTT CTAGGCCA TG
ce6_ct_v6step13_chrI.13223 + 4 6.37e-06 CCCA CTAGGCCA TCC
ce6_ct_v6step13_chrX.1210 - 10 7.36e-06 TCTACCGTTT CTCGGCCC GTACACTGTA
ce6_ct_v6step13_chrIII.9271 - 26 7.36e-06 AATTT CTCGGCCC TCAATTGGTT
ce6_ct_v6step13_chrI.5308 + 42 7.36e-06 CATCATTAAA CTCGGCCC ATTC
Motif 7 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrV.8870 2.07e-06
+7
ce6_ct_v6step13_chrV.2805 2.07e-06
+7
ce6_ct_v6step13_chrV.14118 2.07e-06
+7
ce6_ct_v6step13_chrIV.1686 2.07e-06
-7
ce6_ct_v6step13_chrIV.15760 2.07e-06
+7
ce6_ct_v6step13_chrIII.3164 2.07e-06
+7
ce6_ct_v6step13_chrIII.2388 2.07e-06
-7
+7
ce6_ct_v6step13_chrIII.13330 2.07e-06
-7
+7
ce6_ct_v6step13_chrIII.13188 2.07e-06
-7
+7
ce6_ct_v6step13_chrII.13499 2.07e-06
-7
ce6_ct_v6step13_chrII.13498 2.07e-06
-7
ce6_ct_v6step13_chrI.587 2.07e-06
+7
ce6_ct_v6step13_chrI.2819 2.07e-06
-7
ce6_ct_v6step13_chrI.13256 2.07e-06
-7
+7
ce6_ct_v6step13_chrX.40 6.37e-06
+7
ce6_ct_v6step13_chrV.15356 6.37e-06
+7
ce6_ct_v6step13_chrIV.2258 6.37e-06
-7
ce6_ct_v6step13_chrIV.2076 6.37e-06
+7
ce6_ct_v6step13_chrIV.2075 6.37e-06
-7
ce6_ct_v6step13_chrIV.1946 6.37e-06
-7
ce6_ct_v6step13_chrIV.1945 6.37e-06
-7
ce6_ct_v6step13_chrIV.1934 6.37e-06
-7
ce6_ct_v6step13_chrIV.1930 6.37e-06
-7
ce6_ct_v6step13_chrIV.1929 6.37e-06
+7
ce6_ct_v6step13_chrIV.1839 6.37e-06
+7
ce6_ct_v6step13_chrIV.1837 6.37e-06
+7
ce6_ct_v6step13_chrIV.1810 6.37e-06
+7
ce6_ct_v6step13_chrIII.951 6.37e-06
-7
ce6_ct_v6step13_chrIII.1377 6.37e-06
+7
ce6_ct_v6step13_chrII.3039 6.37e-06
-7
ce6_ct_v6step13_chrII.1917 6.37e-06
-7
ce6_ct_v6step13_chrII.14861 6.37e-06
-7
ce6_ct_v6step13_chrI.777 6.37e-06
-7
ce6_ct_v6step13_chrI.1827 6.37e-06
-7
ce6_ct_v6step13_chrI.1825 6.37e-06
-7
ce6_ct_v6step13_chrI.14086 6.37e-06
-7
ce6_ct_v6step13_chrI.14074 6.37e-06
-7
ce6_ct_v6step13_chrI.14073 6.37e-06
-7
ce6_ct_v6step13_chrI.14072 6.37e-06
+7
ce6_ct_v6step13_chrI.13340 6.37e-06
+7
ce6_ct_v6step13_chrI.13339 6.37e-06
-7
ce6_ct_v6step13_chrI.13272 6.37e-06
+7
ce6_ct_v6step13_chrI.13223 6.37e-06
+7
ce6_ct_v6step13_chrX.1210 7.36e-06
-7
ce6_ct_v6step13_chrIII.9271 7.36e-06
-7
ce6_ct_v6step13_chrI.5308 7.36e-06
+7
SCALE
| | |
1 25 50
Motif 7 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 7 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 7 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 7 regular-expression
CT[AC]GGCCA
Time 10048.30 secs.
P N
MOTIF 8 width = 11 sites = 23 llr = 376 E-value = 6.6e-048
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
20.7 (bits)
Relative Entropy
23.6 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrV.14746 + 3 3.82e-08 ACA ACGACACTCCG CT
ce6_ct_v6step13_chrIV.15056 - 12 3.82e-08 CA ACGACACTCCG AAATCCCGCA
ce6_ct_v6step13_chrIII.856 - 0 3.82e-08 CA ACGACACTCCG
ce6_ct_v6step13_chrIII.781 - 0 3.82e-08 TTTTGCA ACGACACTCCG
ce6_ct_v6step13_chrIII.293 - 1 3.82e-08 CA ACGACACTCCG C
ce6_ct_v6step13_chrIII.1805 - 8 3.82e-08 ATACA ACGACACTCCG GAATCCCG
ce6_ct_v6step13_chrIII.1582 - 3 3.82e-08 ACA ACGACACTCCG CTT
ce6_ct_v6step13_chrIII.1406 - 1 3.82e-08 GCGAAAAACA ACGACACTCCG C
ce6_ct_v6step13_chrIII.1216 + 6 3.82e-08 AAAACA ACGACACTCCG CTAGTACACC
ce6_ct_v6step13_chrII.2987 - 0 3.82e-08 ACGACACTCCG
ce6_ct_v6step13_chrII.171 - 0 3.82e-08 A ACGACACTCCG
ce6_ct_v6step13_chrII.11217 + 1 3.82e-08 A ACGACACTCCG
ce6_ct_v6step13_chrI.7866 + 14 3.82e-08 ACTGGTTCAA ACGACACTCCG
ce6_ct_v6step13_chrI.6804 + 2 3.82e-08 CA ACGACACTCCG CAATCCCGC
ce6_ct_v6step13_chrI.6624 - 0 3.82e-08 AAAATAAACA ACGACACTCCG
ce6_ct_v6step13_chrI.2771 - 29 3.82e-08 CA ACGACACTCCG GAATGACGGA
ce6_ct_v6step13_chrI.1757 - 0 3.82e-08 CA ACGACACTCCG
ce6_ct_v6step13_chrI.1671 + 12 3.82e-08 ACAAAAAACA ACGACACTCCG ATGTTCCGCT
ce6_ct_v6step13_chrI.14105 - 8 3.82e-08 ACA ACGACACTCCG ATATTCCG
ce6_ct_v6step13_chrI.10234 + 0 3.82e-08 ACGACACTCCG A
ce6_ct_v6step13_chrIV.1010 - 2 5.65e-08 AAACTTTCAA ACGACGCTCCG CT
ce6_ct_v6step13_chrIII.7582 + 0 5.65e-08 ACGACGCTCCG AGATGACGCA
ce6_ct_v6step13_chrV.10271 + 17 4.92e-07 GTATTGCTTA CCGACGCGGCG CTCAATCGCA
Motif 8 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrV.14746 3.82e-08
+8
ce6_ct_v6step13_chrIV.15056 3.82e-08
-8
ce6_ct_v6step13_chrIII.856 3.82e-08
-8
ce6_ct_v6step13_chrIII.781 3.82e-08
-8
ce6_ct_v6step13_chrIII.293 3.82e-08
-8
ce6_ct_v6step13_chrIII.1805 3.82e-08
-8
ce6_ct_v6step13_chrIII.1582 3.82e-08
-8
ce6_ct_v6step13_chrIII.1406 3.82e-08
-8
ce6_ct_v6step13_chrIII.1216 3.82e-08
+8
ce6_ct_v6step13_chrII.2987 3.82e-08
-8
ce6_ct_v6step13_chrII.171 3.82e-08
-8
ce6_ct_v6step13_chrII.11217 3.82e-08
+8
ce6_ct_v6step13_chrI.7866 3.82e-08
+8
ce6_ct_v6step13_chrI.6804 3.82e-08
+8
ce6_ct_v6step13_chrI.6624 3.82e-08
-8
ce6_ct_v6step13_chrI.2771 3.82e-08
-8
ce6_ct_v6step13_chrI.1757 3.82e-08
-8
ce6_ct_v6step13_chrI.1671 3.82e-08
+8
ce6_ct_v6step13_chrI.14105 3.82e-08
-8
ce6_ct_v6step13_chrI.10234 3.82e-08
+8
ce6_ct_v6step13_chrIV.1010 5.65e-08
-8
ce6_ct_v6step13_chrIII.7582 5.65e-08
+8
ce6_ct_v6step13_chrV.10271 4.92e-07
+8
SCALE
| | |
1 25 50
Motif 8 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 8 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 8 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 8 regular-expression
ACGACACTCCG
Time 11540.61 secs.
P N
MOTIF 9 width = 8 sites = 46 llr = 537 E-value = 7.2e-042
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
12.9 (bits)
Relative Entropy
16.9 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrX.7827 - 6 9.90e-07 GACAAG CTCCGCCC ATTGTC
ce6_ct_v6step13_chrX.5518 - 56 9.90e-07 CA CTCCGCCC TCCGACTTTT
ce6_ct_v6step13_chrX.12497 + 12 9.90e-07 GCGCCTGCTG CTCCGCCC ATCTTTCCA
ce6_ct_v6step13_chrX.11152 + 1 9.90e-07 G CTCCGCCC ACAAGTTCTC
ce6_ct_v6step13_chrV.9976 - 1 9.90e-07 AAGA CTCCGCCC A
ce6_ct_v6step13_chrV.9629 + 7 9.90e-07 TGGGAAA CTCCGCCC
ce6_ct_v6step13_chrV.9493 - 10 9.90e-07 GA CTCCGCCC CCGTATCATT
ce6_ct_v6step13_chrV.2236 + 9 9.90e-07 ACTTCTCGT CTCCGCCC ATTT
ce6_ct_v6step13_chrV.11106 - 12 9.90e-07 AAGTTTAGCC CTCCGCCC TCCGTGCCAT
ce6_ct_v6step13_chrIV.8159 + 0 9.90e-07 CTCCGCCC ATTT
ce6_ct_v6step13_chrIV.15840 - 4 9.90e-07 CTCCGCCC ATTT
ce6_ct_v6step13_chrIV.15823 - 11 9.90e-07 TTAGG CTCCGCCC CACTTTCTGT
ce6_ct_v6step13_chrIV.15806 - 0 9.90e-07 TTTAAG CTCCGCCC
ce6_ct_v6step13_chrIV.1209 + 3 9.90e-07 AGG CTCCGCCC AC
ce6_ct_v6step13_chrIII.987 - 1 9.90e-07 AAATTTTAAG CTCCGCCC C
ce6_ct_v6step13_chrIII.15032 - 6 9.90e-07 AATTAAG CTCCGCCC CTTTTT
ce6_ct_v6step13_chrIII.13562 + 1 9.90e-07 G CTCCGCCC ATTT
ce6_ct_v6step13_chrII.14805 - 2 9.90e-07 AAATTATG CTCCGCCC AT
ce6_ct_v6step13_chrI.2421 - 5 9.90e-07 AATAGA CTCCGCCC CCTTT
ce6_ct_v6step13_chrI.15726 + 11 9.90e-07 AAAAAATCGG CTCCGCCC A
ce6_ct_v6step13_chrI.14121 + 1 9.90e-07 G CTCCGCCC ACTTTCAATT
ce6_ct_v6step13_chrI.13234 + 0 9.90e-07 CTCCGCCC ATTTTT
ce6_ct_v6step13_chrX.5523 + 1 1.46e-06 G CCCCGCCC
ce6_ct_v6step13_chrX.13729 + 0 1.46e-06 CCCCGCCC ACTTTGTGTT
ce6_ct_v6step13_chrV.8952 + 7 1.46e-06 CCAATCG CCCCGCCC ATTTT
ce6_ct_v6step13_chrIV.1693 + 0 1.46e-06 CCCCGCCC ACTTTTCCGT
ce6_ct_v6step13_chrIV.15987 + 9 1.46e-06 AAAAATAAG CCCCGCCC CTTTTTTGCA
ce6_ct_v6step13_chrIV.1549 - 8 1.46e-06 CCCCGCCC ACGCTTTT
ce6_ct_v6step13_chrV.3313 + 0 4.52e-06 CCACGCCC ATTTTTCG
ce6_ct_v6step13_chrIII.13046 - 4 4.52e-06 CCACGCCC ACTT
ce6_ct_v6step13_chrI.13957 + 24 4.52e-06 CAAATCGAAA CCACGCCC
ce6_ct_v6step13_chrI.13145 + 2 4.52e-06 GG CCACGCCC ACTTTTTTTT
ce6_ct_v6step13_chrX.39 + 3 8.65e-06 TAA CTCCGCTC AAAATCCATA
ce6_ct_v6step13_chrIV.15669 - 10 8.65e-06 GA CTCCGCCT ACTTTTTTTT
ce6_ct_v6step13_chrII.9622 - 13 8.65e-06 G CTCCGCCT ACTTTTTTGG
ce6_ct_v6step13_chrII.3039 - 16 8.65e-06 AATTTCCAAG CTCCGCCT ACGAATCCGT
ce6_ct_v6step13_chrI.1462 - 11 8.65e-06 TTAGG CTCCGCTC ACATTTTGAA
ce6_ct_v6step13_chrV.15166 - 0 1.06e-05 CTGGTTCGAC CCCCGCTC
ce6_ct_v6step13_chrX.14882 + 25 1.16e-05 TTTTGTGGAT CTCCCCCC TCTTTGAAAA
ce6_ct_v6step13_chrX.5517 + 70 1.67e-05 ACCACTTCTT CTCCGCAC TTGTTTTGCA
ce6_ct_v6step13_chrX.15614 + 12 1.67e-05 TCCTTTTTGT CTCCACCC CCTT
ce6_ct_v6step13_chrV.8870 - 0 1.67e-05 GGGCGATAGA CTCCACCC
ce6_ct_v6step13_chrV.4090 + 7 1.67e-05 CCACCTG CTCCGGCC GGCCGAACAG
ce6_ct_v6step13_chrV.3725 - 4 1.93e-05 GCGCGGAAGG ATCCGCCC ATTT
ce6_ct_v6step13_chrII.6874 + 9 2.17e-05 CTGAGATTT CCCCGCAC ATGATTGTTT
ce6_ct_v6step13_chrX.2874 + 22 2.27e-05 CCGAATTCGG ACCCGCCC CAATCAGTTG
Motif 9 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrX.7827 9.90e-07
-9
ce6_ct_v6step13_chrX.5518 9.90e-07
-9
ce6_ct_v6step13_chrX.12497 9.90e-07
+9
ce6_ct_v6step13_chrX.11152 9.90e-07
+9
ce6_ct_v6step13_chrV.9976 9.90e-07
-9
ce6_ct_v6step13_chrV.9629 9.90e-07
+9
ce6_ct_v6step13_chrV.9493 9.90e-07
-9
ce6_ct_v6step13_chrV.2236 9.90e-07
+9
ce6_ct_v6step13_chrV.11106 9.90e-07
-9
ce6_ct_v6step13_chrIV.8159 9.90e-07
+9
ce6_ct_v6step13_chrIV.15840 9.90e-07
-9
ce6_ct_v6step13_chrIV.15823 9.90e-07
-9
ce6_ct_v6step13_chrIV.15806 9.90e-07
-9
ce6_ct_v6step13_chrIV.1209 9.90e-07
+9
ce6_ct_v6step13_chrIII.987 9.90e-07
-9
ce6_ct_v6step13_chrIII.15032 9.90e-07
-9
ce6_ct_v6step13_chrIII.13562 9.90e-07
+9
ce6_ct_v6step13_chrII.14805 9.90e-07
-9
ce6_ct_v6step13_chrI.2421 9.90e-07
-9
ce6_ct_v6step13_chrI.15726 9.90e-07
+9
ce6_ct_v6step13_chrI.14121 9.90e-07
+9
ce6_ct_v6step13_chrI.13234 9.90e-07
+9
ce6_ct_v6step13_chrX.5523 1.46e-06
+9
ce6_ct_v6step13_chrX.13729 1.46e-06
+9
ce6_ct_v6step13_chrV.8952 1.46e-06
+9
ce6_ct_v6step13_chrIV.1693 1.46e-06
+9
ce6_ct_v6step13_chrIV.15987 1.46e-06
+9
ce6_ct_v6step13_chrIV.1549 1.46e-06
-9
ce6_ct_v6step13_chrV.3313 4.52e-06
+9
ce6_ct_v6step13_chrIII.13046 4.52e-06
-9
ce6_ct_v6step13_chrI.13957 4.52e-06
+9
ce6_ct_v6step13_chrI.13145 4.52e-06
+9
ce6_ct_v6step13_chrX.39 8.65e-06
+9
ce6_ct_v6step13_chrIV.15669 8.65e-06
-9
ce6_ct_v6step13_chrII.9622 8.65e-06
-9
ce6_ct_v6step13_chrII.3039 8.65e-06
-9
ce6_ct_v6step13_chrI.1462 8.65e-06
-9
ce6_ct_v6step13_chrV.15166 1.06e-05
-9
ce6_ct_v6step13_chrX.14882 1.16e-05
+9
ce6_ct_v6step13_chrX.5517 1.67e-05
+9
ce6_ct_v6step13_chrX.15614 1.67e-05
+9
ce6_ct_v6step13_chrV.8870 1.67e-05
-9
ce6_ct_v6step13_chrV.4090 1.67e-05
+9
ce6_ct_v6step13_chrV.3725 1.93e-05
-9
ce6_ct_v6step13_chrII.6874 2.17e-05
+9
ce6_ct_v6step13_chrX.2874 2.27e-05
+9
SCALE
| | | | |
1 25 50 75 100
Motif 9 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 9 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 9 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 9 regular-expression
C[TC]CCGCCC
Time 12848.15 secs.
P N
MOTIF 10 width = 10 sites = 46 llr = 532 E-value = 1.6e-034
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
16.9 (bits)
Relative Entropy
16.7 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrX.5750 + 2 1.03e-06 AG CTACAGTAAC CC
ce6_ct_v6step13_chrV.15048 - 34 1.03e-06 AAG CTACAGTAAC CCAACCCTAC
ce6_ct_v6step13_chrV.12341 - 1 1.03e-06 AAATTTTAAG CTACAGTAAC C
ce6_ct_v6step13_chrIV.1814 - 4 1.03e-06 CTACAGTAAC CCGA
ce6_ct_v6step13_chrIII.479 - 2 1.03e-06 TTTTGGAG CTACAGTAAC CC
ce6_ct_v6step13_chrIII.1850 - 6 1.03e-06 G CTACAGTAAC CCGGGA
ce6_ct_v6step13_chrIII.1490 - 1 1.03e-06 ACTTTCCAAG CTACAGTAAC C
ce6_ct_v6step13_chrIII.14779 + 14 1.03e-06 GCCTTTAAAA CTACAGTAAC CCATAATTT
ce6_ct_v6step13_chrIII.13459 - 1 1.03e-06 G CTACAGTAAC C
ce6_ct_v6step13_chrIII.1320 - 25 1.03e-06 CTACAGTAAC CCCAAGAATT
ce6_ct_v6step13_chrII.3282 + 0 1.03e-06 CTACAGTAAC ACGAATTTCA
ce6_ct_v6step13_chrII.2358 - 2 1.03e-06 ATTTTTTCAG CTACAGTAAC CC
ce6_ct_v6step13_chrI.7821 + 20 1.03e-06 AGACACCTTT CTACAGTAAC CCTA
ce6_ct_v6step13_chrI.6736 + 0 1.03e-06 CTACAGTAAC CTACAGTAA
ce6_ct_v6step13_chrI.4778 + 4 1.03e-06 AAAA CTACAGTAAC CCT
ce6_ct_v6step13_chrI.14561 + 14 1.03e-06 AGTAATCCGT CTACAGTAAC CCCCAAA
ce6_ct_v6step13_chrI.14146 - 32 1.03e-06 ATCAAAAAT CTACAGTAAC CCAGTGGTTT
ce6_ct_v6step13_chrI.14085 + 34 1.03e-06 TGCAGTAATC CTACAGTAAC C
ce6_ct_v6step13_chrI.14085 - 13 1.03e-06 ATTACTGCAG CTACAGTAAC CTGGGCACAA
ce6_ct_v6step13_chrI.13293 + 29 1.03e-06 CTAGAGTGAC CTACAGTAAC CTACA
ce6_ct_v6step13_chrI.13291 - 2 1.03e-06 ATTACTGTAG CTACAGTAAC CC
ce6_ct_v6step13_chrII.1011 - 3 1.52e-06 CTACAGTACC CCT
ce6_ct_v6step13_chrI.13293 + 3 1.52e-06 AAT CTACAGTACC CCTATTCTAG
ce6_ct_v6step13_chrIV.1049 + 16 3.66e-06 ACGGTAGAAG CTACAGTAAT CCAAAAAAA
ce6_ct_v6step13_chrIII.14594 + 12 3.66e-06 TACAGTATCC CTACAGTAAT CTTACAGT
ce6_ct_v6step13_chrII.2885 + 4 3.66e-06 TTAA CTACAGTAAT CCTACAGTAG
ce6_ct_v6step13_chrII.13712 + 1 3.66e-06 C CTACAGTAAT CCTAGAGTAA
ce6_ct_v6step13_chrI.6215 + 12 3.66e-06 CCACCGTAAC CTACAGTAAT CT
ce6_ct_v6step13_chrI.14578 - 3 3.66e-06 TCAAG CTACAGTAAT CTT
ce6_ct_v6step13_chrI.14561 + 0 3.66e-06 CTACAGTAAT CCGTCTACAG
ce6_ct_v6step13_chrI.13291 + 12 3.66e-06 GTTACTGTAG CTACAGTAAT CTATGCCACA
ce6_ct_v6step13_chrI.11993 - 16 3.66e-06 CGCAAATTCT CTACAGTAAT CTTAAAGGCG
ce6_ct_v6step13_chrIV.13813 - 6 5.18e-06 CAGTGAT CTACAGTACT ACAGTA
ce6_ct_v6step13_chrIII.8793 - 33 5.18e-06 AG CTACAGTACT CCCCTTCTTT
ce6_ct_v6step13_chrII.13648 - 5 5.18e-06 CTACAGTACT CCAAC
ce6_ct_v6step13_chrI.14162 + 15 5.18e-06 ACTTTCGGGG CTACCGTAAC CCAAAA
ce6_ct_v6step13_chrII.2885 + 15 5.91e-06 TACAGTAATC CTACAGTAGC CCAAAAA
ce6_ct_v6step13_chrI.15129 + 1 6.40e-06 G CTACGGTAAC CC
ce6_ct_v6step13_chrIII.14594 + 1 8.46e-06 C CTACAGTATC CCTACAGTAA
ce6_ct_v6step13_chrIV.2097 + 2 9.72e-06 GG GTACAGTAAC CCAAGG
ce6_ct_v6step13_chrX.3088 - 15 1.29e-05 G TTACAGTAAC CTCACGGGTA
ce6_ct_v6step13_chrIV.1049 - 3 1.34e-05 ACTGTAGCTT CTACCGTACT CCC
ce6_ct_v6step13_chrII.11913 + 0 1.34e-05 CTACCGTACT CCGCTTAAAG
ce6_ct_v6step13_chrI.28 - 41 2.30e-05 CTACAGTACA CCATATTTAA
ce6_ct_v6step13_chrX.3765 - 38 3.22e-05 TGCTCGTCAG CTACACTAAT CAAGCTATTT
ce6_ct_v6step13_chrIV.5197 - 7 3.22e-05 TTACAGTAAT CCGAGAG
Motif 10 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrX.5750 1.03e-06
+10
ce6_ct_v6step13_chrV.15048 1.03e-06
-10
ce6_ct_v6step13_chrV.12341 1.03e-06
-10
ce6_ct_v6step13_chrIV.1814 1.03e-06
-10
ce6_ct_v6step13_chrIII.479 1.03e-06
-10
ce6_ct_v6step13_chrIII.1850 1.03e-06
-10
ce6_ct_v6step13_chrIII.1490 1.03e-06
-10
ce6_ct_v6step13_chrIII.14779 1.03e-06
+10
ce6_ct_v6step13_chrIII.13459 1.03e-06
-10
ce6_ct_v6step13_chrIII.1320 1.03e-06
-10
ce6_ct_v6step13_chrII.3282 1.03e-06
+10
ce6_ct_v6step13_chrII.2358 1.03e-06
-10
ce6_ct_v6step13_chrI.7821 1.03e-06
+10
ce6_ct_v6step13_chrI.6736 1.03e-06
+10
ce6_ct_v6step13_chrI.4778 1.03e-06
+10
ce6_ct_v6step13_chrI.14561 1.03e-06
+10
+10
ce6_ct_v6step13_chrI.14146 1.03e-06
-10
ce6_ct_v6step13_chrI.14085 1.03e-06
-10
+10
ce6_ct_v6step13_chrI.13293 1.03e-06
+10
+10
ce6_ct_v6step13_chrI.13291 1.03e-06
-10
+10
ce6_ct_v6step13_chrII.1011 1.52e-06
-10
ce6_ct_v6step13_chrIV.1049 3.66e-06
-10
+10
ce6_ct_v6step13_chrIII.14594 3.66e-06
+10
+10
ce6_ct_v6step13_chrII.2885 3.66e-06
+10
+10
ce6_ct_v6step13_chrII.13712 3.66e-06
+10
ce6_ct_v6step13_chrI.6215 3.66e-06
+10
ce6_ct_v6step13_chrI.14578 3.66e-06
-10
ce6_ct_v6step13_chrI.11993 3.66e-06
-10
ce6_ct_v6step13_chrIV.13813 5.18e-06
-10
ce6_ct_v6step13_chrIII.8793 5.18e-06
-10
ce6_ct_v6step13_chrII.13648 5.18e-06
-10
ce6_ct_v6step13_chrI.14162 5.18e-06
+10
ce6_ct_v6step13_chrI.15129 6.40e-06
+10
ce6_ct_v6step13_chrIV.2097 9.72e-06
+10
ce6_ct_v6step13_chrX.3088 1.29e-05
-10
ce6_ct_v6step13_chrII.11913 1.34e-05
+10
ce6_ct_v6step13_chrI.28 2.30e-05
-10
ce6_ct_v6step13_chrX.3765 3.22e-05
-10
ce6_ct_v6step13_chrIV.5197 3.22e-05
-10
SCALE
| | |
1 25 50
Motif 10 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 10 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 10 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 10 regular-expression
CTACAGTAA[CT]
Time 14113.03 secs.
P N
MOTIF 11 width = 15 sites = 25 llr = 370 E-value = 2.4e-031
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
19.5 (bits)
Relative Entropy
21.3 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrIV.6593 + 13 3.42e-09 GTGTGAAATT GCGTCTCGGTGTTTG CACAC
ce6_ct_v6step13_chrX.5513 + 3 5.10e-09 CGT GTGTGTGTGTGTGTG C
ce6_ct_v6step13_chrV.2336 + 3 5.10e-09 TAT GTGTGTGTGTGTGTG CACCGGGATA
ce6_ct_v6step13_chrII.5523 + 7 5.10e-09 TTTCGGT GTGTGTGTGTGTGTG T
ce6_ct_v6step13_chrIII.1819 - 1 1.20e-08 ATGCAAAAGT GCGTCGCGGTGTTTG C
ce6_ct_v6step13_chrX.8108 - 2 1.55e-08 GTGCAAATGT GCGTGATTGTGTTTG CA
ce6_ct_v6step13_chrI.11780 - 6 2.14e-08 TTTT GCGTCATGGTGTTTG CAGAAA
ce6_ct_v6step13_chrX.15896 + 51 2.44e-08 ATGGATGTGC GTGTGTTTGTGTGTG GAACAGGAAC
ce6_ct_v6step13_chrI.13190 - 3 2.44e-08 GTGCATTTTG ACGTGAGGGTGTTTG CGT
ce6_ct_v6step13_chrV.15001 - 1 2.97e-08 TGCATTCTG ACGTGACGGTGTTTG C
ce6_ct_v6step13_chrIV.6042 + 31 2.97e-08 GTGCATTTCG ACGTGACGGTGTTTG CA
ce6_ct_v6step13_chrI.1700 + 44 5.56e-08 TGAGTTGTCT GTGTGTATGTGTGTG TTGTATGCAG
ce6_ct_v6step13_chrI.3230 + 10 9.06e-08 GTGCATTCTA CCGTGATGGTGTTTG CACA
ce6_ct_v6step13_chrI.12166 - 42 9.83e-08 AATTGAATTT GTGTGTGTGCGTGTG GAAGGATGTG
ce6_ct_v6step13_chrIV.8941 + 11 1.09e-07 GTGTACTTTT ACGTGGTGGTGTTTG CACACATTGC
ce6_ct_v6step13_chrIII.14666 - 1 1.09e-07 TGT GCGTCACGGTGCTTG C
ce6_ct_v6step13_chrII.9737 - 7 1.09e-07 CTGCATTTGA GCGCCACGGTGTTTG CACAATG
ce6_ct_v6step13_chrIII.11968 + 10 1.51e-07 GTGCGTTTGT GCGTCGCCGTGTTTG CACAATTCTA
ce6_ct_v6step13_chrX.4805 + 18 1.64e-07 GTGCATTAGT ACGTCATGGTGTTTG C
ce6_ct_v6step13_chrX.7935 + 23 1.94e-07 AGTGAGTTTT GTGTGTATGTGTATG TGTAGAAAAA
ce6_ct_v6step13_chrX.1759 - 1 1.94e-07 TTT GTGTGTATGTGTATG T
ce6_ct_v6step13_chrX.2065 - 8 3.48e-07 TGT GTATGTGTGTGTGTG CTTGTTCA
ce6_ct_v6step13_chrV.2206 - 1 5.82e-07 ATTAGGTAAT CAGTGTGTGTGTTTG C
ce6_ct_v6step13_chrV.10333 + 26 6.58e-07 GTGCCGTTGT GTGTATGTGTGTATG TGCTTCATCA
ce6_ct_v6step13_chrIV.11820 + 11 8.32e-07 ATACAAAACG GTGTGTGTATGTATG CGGGTGTATC
Motif 11 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrIV.6593 3.42e-09
+11
ce6_ct_v6step13_chrX.5513 5.10e-09
+11
ce6_ct_v6step13_chrV.2336 5.10e-09
+11
ce6_ct_v6step13_chrII.5523 5.10e-09
+11
ce6_ct_v6step13_chrIII.1819 1.20e-08
-11
ce6_ct_v6step13_chrX.8108 1.55e-08
-11
ce6_ct_v6step13_chrI.11780 2.14e-08
-11
ce6_ct_v6step13_chrX.15896 2.44e-08
+11
ce6_ct_v6step13_chrI.13190 2.44e-08
-11
ce6_ct_v6step13_chrV.15001 2.97e-08
-11
ce6_ct_v6step13_chrIV.6042 2.97e-08
+11
ce6_ct_v6step13_chrI.1700 5.56e-08
+11
ce6_ct_v6step13_chrI.3230 9.06e-08
+11
ce6_ct_v6step13_chrI.12166 9.83e-08
-11
ce6_ct_v6step13_chrIV.8941 1.09e-07
+11
ce6_ct_v6step13_chrIII.14666 1.09e-07
-11
ce6_ct_v6step13_chrII.9737 1.09e-07
-11
ce6_ct_v6step13_chrIII.11968 1.51e-07
+11
ce6_ct_v6step13_chrX.4805 1.64e-07
+11
ce6_ct_v6step13_chrX.7935 1.94e-07
+11
ce6_ct_v6step13_chrX.1759 1.94e-07
-11
ce6_ct_v6step13_chrX.2065 3.48e-07
-11
ce6_ct_v6step13_chrV.2206 5.82e-07
-11
ce6_ct_v6step13_chrV.10333 6.58e-07
+11
ce6_ct_v6step13_chrIV.11820 8.32e-07
+11
SCALE
| | | | |
1 25 50 75 100
Motif 11 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 11 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 11 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 11 regular-expression
[GA][CT]GT[GC][TA][GCT][TG]GTGT[TG]TG
Time 15411.13 secs.
P N
MOTIF 12 width = 15 sites = 18 llr = 304 E-value = 9.8e-030
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
23.2 (bits)
Relative Entropy
24.4 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrV.12867 + 0 7.38e-10 AAACGCGCTCTATTG ACAATTTTCG
ce6_ct_v6step13_chrIV.1673 - 4 7.38e-10 AAACGCGCTCTATTG AGAA
ce6_ct_v6step13_chrV.12017 + 1 1.35e-09 G AAATGCGCTCCATTG CGAAAAAATG
ce6_ct_v6step13_chrV.14704 + 0 2.98e-09 AAACGCGCTCCAATG CTAAAA
ce6_ct_v6step13_chrII.1653 - 4 2.98e-09 AAATGCGCTCTATTG AAAA
ce6_ct_v6step13_chrIII.1276 + 0 4.08e-09 AAACGCGCTCTAATG
ce6_ct_v6step13_chrV.13873 - 3 4.13e-09 C AAGCGCGCTCCACTG CAC
ce6_ct_v6step13_chrII.3578 + 1 6.39e-09 C AAGTGCGCTCTATTG CACACCGCT
ce6_ct_v6step13_chrI.1824 - 7 8.01e-09 C AAACGCGCCCCATTG AGAAATT
ce6_ct_v6step13_chrI.1242 - 28 8.01e-09 AAACGCGCTCCGTTG ACAAATTATT
ce6_ct_v6step13_chrI.1326 - 0 8.54e-09 AAACGCGCTCTACCG
ce6_ct_v6step13_chrIII.1846 + 1 1.10e-08 C AAATGCGCTCCACCG AACTC
ce6_ct_v6step13_chrI.15425 + 0 1.38e-08 AAGTGCGCTCTAATG AGAAAAAT
ce6_ct_v6step13_chrIV.3618 + 1 1.66e-08 C AAACGCGCTCTTTTG AGAATTT
ce6_ct_v6step13_chrIV.1950 - 4 2.46e-08 AAATACGCTCCATTG AGAA
ce6_ct_v6step13_chrIV.2120 + 0 5.45e-08 AAATGTGCTCTATTG GCGATT
ce6_ct_v6step13_chrV.14703 - 17 9.90e-08 AAATGCACTCTAATG TCAAATTTTC
ce6_ct_v6step13_chrI.1172 - 8 1.16e-07 C AAATACGCTCTATGG AAAAATTT
Motif 12 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrV.12867 7.38e-10
+12
ce6_ct_v6step13_chrIV.1673 7.38e-10
-12
ce6_ct_v6step13_chrV.12017 1.35e-09
+12
ce6_ct_v6step13_chrV.14704 2.98e-09
+12
ce6_ct_v6step13_chrII.1653 2.98e-09
-12
ce6_ct_v6step13_chrIII.1276 4.08e-09
+12
ce6_ct_v6step13_chrV.13873 4.13e-09
-12
ce6_ct_v6step13_chrII.3578 6.39e-09
+12
ce6_ct_v6step13_chrI.1824 8.01e-09
-12
ce6_ct_v6step13_chrI.1242 8.01e-09
-12
ce6_ct_v6step13_chrI.1326 8.54e-09
-12
ce6_ct_v6step13_chrIII.1846 1.10e-08
+12
ce6_ct_v6step13_chrI.15425 1.38e-08
+12
ce6_ct_v6step13_chrIV.3618 1.66e-08
+12
ce6_ct_v6step13_chrIV.1950 2.46e-08
-12
ce6_ct_v6step13_chrIV.2120 5.45e-08
+12
ce6_ct_v6step13_chrV.14703 9.90e-08
-12
ce6_ct_v6step13_chrI.1172 1.16e-07
-12
SCALE
| |
1 25
Motif 12 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 12 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 12 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 12 regular-expression
AAA[CT]GCGCTC[TC]A[TA]TG
Time 16763.32 secs.
P N
MOTIF 13 width = 8 sites = 50 llr = 542 E-value = 3.7e-028
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
12.8 (bits)
Relative Entropy
15.6 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrV.7521 - 0 3.05e-06 GAGC CGCGACGC
ce6_ct_v6step13_chrV.4697 + 0 3.05e-06 CGCGACGC A
ce6_ct_v6step13_chrV.14197 - 11 3.05e-06 ACAC CGCGACGC AAAAATGCAC
ce6_ct_v6step13_chrIV.15624 - 22 3.05e-06 C CGCGACGC GACCGCAACG
ce6_ct_v6step13_chrIII.8238 - 7 3.05e-06 CGCGACGC GACCGCT
ce6_ct_v6step13_chrIII.7995 + 17 3.05e-06 TACGCTGACA CGCGACGC ACGTCAAATG
ce6_ct_v6step13_chrII.7826 + 0 3.05e-06 CGCGACGC ACACGCAACG
ce6_ct_v6step13_chrII.14005 - 47 3.05e-06 GGCCTAAAAT CGCGACGC ACTACGGTAG
ce6_ct_v6step13_chrI.7498 + 4 3.05e-06 CGAC CGCGACGC G
ce6_ct_v6step13_chrI.6226 - 27 3.05e-06 CAC CGCGACGC TAAATTGCAC
ce6_ct_v6step13_chrI.11433 - 2 3.05e-06 CCGCGAAAAC CGCGACGC GC
ce6_ct_v6step13_chrX.13 + 7 5.12e-06 TTCGTGG CGAGACCC
ce6_ct_v6step13_chrV.818 - 0 5.12e-06 TCGTGG CGAGACCC
ce6_ct_v6step13_chrV.499 + 0 5.12e-06 CGAGACCC ACAACCAAAA
ce6_ct_v6step13_chrV.14339 - 9 5.12e-06 TCGAACC CGAGACCC TTCACTCCA
ce6_ct_v6step13_chrIV.9910 - 3 5.12e-06 TTTTTCGTGT CGAGACCC AAT
ce6_ct_v6step13_chrIV.2667 + 6 5.12e-06 TCGCGG CGAGACCC
ce6_ct_v6step13_chrIV.1863 - 4 5.12e-06 ATTTTCGCTT CGAGACCC AAAA
ce6_ct_v6step13_chrIV.1487 - 0 5.12e-06 CGCTT CGAGACCC
ce6_ct_v6step13_chrIV.1241 + 0 5.12e-06 CGAGACCC AACACAGAAT
ce6_ct_v6step13_chrIII.12094 - 26 5.12e-06 CGAGACCC ATCTGAATGA
ce6_ct_v6step13_chrII.9951 + 6 5.12e-06 TCGCTG CGAGACCC ATGGCCGTGG
ce6_ct_v6step13_chrII.5125 + 16 5.12e-06 AATTTTTTCG CGAGACCC GAACATTCCG
ce6_ct_v6step13_chrI.1600 + 20 5.12e-06 ATTTTCGTTG CGAGACCC
ce6_ct_v6step13_chrI.14329 + 7 5.12e-06 TTCGTGG CGAGACCC
ce6_ct_v6step13_chrI.14146 - 8 5.12e-06 GTTTTCGAGC CGAGACCC TCGAAAAT
ce6_ct_v6step13_chrI.11497 - 1 5.12e-06 ATTTCGTGG CGAGACCC A
ce6_ct_v6step13_chrV.15301 + 1 1.04e-05 G AGAGACGC CAGAGAAAAC
ce6_ct_v6step13_chrV.12415 + 9 1.04e-05 TAATTAAGG AGAGACGC AGA
ce6_ct_v6step13_chrIV.5278 + 17 1.04e-05 AGAGATTTGC AGAGACGC AGA
ce6_ct_v6step13_chrIV.4655 - 0 1.04e-05 TGTAAGATGA AGAGACGC
ce6_ct_v6step13_chrIII.8004 + 0 1.04e-05 AGAGACGC AGA
ce6_ct_v6step13_chrIII.2617 - 5 1.04e-05 G AGAGACGC AGACA
ce6_ct_v6step13_chrIII.12691 + 1 1.04e-05 G AGAGACGC AGA
ce6_ct_v6step13_chrIII.1088 - 3 1.04e-05 AGAGACGC AGA
ce6_ct_v6step13_chrIII.10784 + 0 1.04e-05 AGAGACGC AG
ce6_ct_v6step13_chrIII.10639 + 10 1.04e-05 TGTGAGACGA AGAGACGC A
ce6_ct_v6step13_chrII.9060 - 7 1.04e-05 AGAGACGC AGACAGT
ce6_ct_v6step13_chrII.15082 + 3 1.04e-05 CGA AGAGACGC AGAACGTCTC
ce6_ct_v6step13_chrII.12271 + 0 1.04e-05 AGAGACGC AGA
ce6_ct_v6step13_chrII.10631 + 1 1.04e-05 G AGAGACGC AGA
ce6_ct_v6step13_chrII.1046 - 6 1.04e-05 AGAGACGC AGACAT
ce6_ct_v6step13_chrI.9499 + 0 1.04e-05 AGAGACGC AGA
ce6_ct_v6step13_chrI.13807 - 3 1.04e-05 AGAGACGC AGA
ce6_ct_v6step13_chrI.13707 - 11 1.04e-05 AGAGACGC AGACACTAAA
ce6_ct_v6step13_chrX.1327 - 109 1.25e-05 TTTGAATGGC AGCGACGC AATAGATTTG
ce6_ct_v6step13_chrIV.10368 - 41 1.98e-05 GCGTTTCTGT CGAGCCGC CTTTGAACGG
ce6_ct_v6step13_chrV.8870 - 33 2.03e-05 CCGAGAAAAC CGCGCCGC ACTTTGCGTT
ce6_ct_v6step13_chrX.13559 - 14 2.23e-05 GTTATTTTAT CGAGGCGC TAATAAACCG
ce6_ct_v6step13_chrIII.2773 + 7 2.94e-05 CGTAAAT CGACACGC GCGCCTTTAA
Motif 13 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrV.7521 3.05e-06
-13
ce6_ct_v6step13_chrV.4697 3.05e-06
+13
ce6_ct_v6step13_chrV.14197 3.05e-06
-13
ce6_ct_v6step13_chrIV.15624 3.05e-06
-13
ce6_ct_v6step13_chrIII.8238 3.05e-06
-13
ce6_ct_v6step13_chrIII.7995 3.05e-06
+13
ce6_ct_v6step13_chrII.7826 3.05e-06
+13
ce6_ct_v6step13_chrII.14005 3.05e-06
-13
ce6_ct_v6step13_chrI.7498 3.05e-06
+13
ce6_ct_v6step13_chrI.6226 3.05e-06
-13
ce6_ct_v6step13_chrI.11433 3.05e-06
-13
ce6_ct_v6step13_chrX.13 5.12e-06
+13
ce6_ct_v6step13_chrV.818 5.12e-06
-13
ce6_ct_v6step13_chrV.499 5.12e-06
+13
ce6_ct_v6step13_chrV.14339 5.12e-06
-13
ce6_ct_v6step13_chrIV.9910 5.12e-06
-13
ce6_ct_v6step13_chrIV.2667 5.12e-06
+13
ce6_ct_v6step13_chrIV.1863 5.12e-06
-13
ce6_ct_v6step13_chrIV.1487 5.12e-06
-13
ce6_ct_v6step13_chrIV.1241 5.12e-06
+13
ce6_ct_v6step13_chrIII.12094 5.12e-06
-13
ce6_ct_v6step13_chrII.9951 5.12e-06
+13
ce6_ct_v6step13_chrII.5125 5.12e-06
+13
ce6_ct_v6step13_chrI.1600 5.12e-06
+13
ce6_ct_v6step13_chrI.14329 5.12e-06
+13
ce6_ct_v6step13_chrI.14146 5.12e-06
-13
ce6_ct_v6step13_chrI.11497 5.12e-06
-13
ce6_ct_v6step13_chrV.15301 1.04e-05
+13
ce6_ct_v6step13_chrV.12415 1.04e-05
+13
ce6_ct_v6step13_chrIV.5278 1.04e-05
+13
ce6_ct_v6step13_chrIV.4655 1.04e-05
-13
ce6_ct_v6step13_chrIII.8004 1.04e-05
+13
ce6_ct_v6step13_chrIII.2617 1.04e-05
-13
ce6_ct_v6step13_chrIII.12691 1.04e-05
+13
ce6_ct_v6step13_chrIII.1088 1.04e-05
-13
ce6_ct_v6step13_chrIII.10784 1.04e-05
+13
ce6_ct_v6step13_chrIII.10639 1.04e-05
+13
ce6_ct_v6step13_chrII.9060 1.04e-05
-13
ce6_ct_v6step13_chrII.15082 1.04e-05
+13
ce6_ct_v6step13_chrII.12271 1.04e-05
+13
ce6_ct_v6step13_chrII.10631 1.04e-05
+13
ce6_ct_v6step13_chrII.1046 1.04e-05
-13
ce6_ct_v6step13_chrI.9499 1.04e-05
+13
ce6_ct_v6step13_chrI.13807 1.04e-05
-13
ce6_ct_v6step13_chrI.13707 1.04e-05
-13
ce6_ct_v6step13_chrX.1327 1.25e-05
-13
ce6_ct_v6step13_chrIV.10368 1.98e-05
-13
ce6_ct_v6step13_chrV.8870 2.03e-05
-13
ce6_ct_v6step13_chrX.13559 2.23e-05
-13
ce6_ct_v6step13_chrIII.2773 2.94e-05
+13
SCALE
| | | | | |
1 25 50 75 100 125
Motif 13 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 13 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 13 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 13 regular-expression
[CA]G[AC]GAC[GC]C
Time 18138.63 secs.
P N
MOTIF 14 width = 15 sites = 46 llr = 536 E-value = 4.4e-030
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
16.4 (bits)
Relative Entropy
16.8 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrX.14502 - 17 3.21e-09 GAGGA AGAAGAAGAAGAAGA TGTCATATAT
ce6_ct_v6step13_chrV.8495 - 7 3.21e-09 ATGAAGCCGA AGAAGAAGAAGAAGA AGTATAC
ce6_ct_v6step13_chrIII.624 - 8 3.21e-09 AGAAGAAGAAGAAGA CACACCCA
ce6_ct_v6step13_chrIII.180 + 4 3.21e-09 CAGC AGAAGAAGAAGAAGA AGC
ce6_ct_v6step13_chrIV.5515 + 0 7.33e-09 AGAAGAAGAAGAAGC C
ce6_ct_v6step13_chrI.9054 + 0 7.33e-09 AGAAGAAGAAGAAGC TTTGTATGGG
ce6_ct_v6step13_chrIII.9994 - 0 1.27e-08 ACGACGGAGG AGACGAAGAAGAAGA
ce6_ct_v6step13_chrIII.3114 + 67 1.27e-08 AATACGAAGA AGACGAAGAAGAAGA
ce6_ct_v6step13_chrII.13252 - 18 1.53e-07 TGATTATTT AGAAGAAGAAGATGA AAAAGCGAGA
ce6_ct_v6step13_chrX.13729 - 95 1.73e-07 GAAGAGAA AGGAGAAGAAGACCA ATTGTAAAAA
ce6_ct_v6step13_chrV.6981 - 1 2.17e-07 AAAA AGAAGATGATGACGA G
ce6_ct_v6step13_chrX.10888 + 37 2.52e-07 AATCAGTTAA AGAAGCAGAAAAAGA GATATTTGCG
ce6_ct_v6step13_chrI.11535 + 3 2.78e-07 AAA AGAAGGAGAAGCAGC A
ce6_ct_v6step13_chrX.7486 - 28 3.52e-07 ACATAAAACA AGGAGAAGAAGGCGA CTGGAAAGGC
ce6_ct_v6step13_chrX.2473 + 9 4.06e-07 GGAAGAATA AGAATAAGAAGAAGA ATAACGTACT
ce6_ct_v6step13_chrII.3128 + 6 4.06e-07 AAAAAA AGAAAAAGAAGAAGA CATTTTCGTG
ce6_ct_v6step13_chrIV.11979 - 2 6.98e-07 A AGAAGAAAAAGAAGA CA
ce6_ct_v6step13_chrIV.6102 - 4 1.19e-06 CAAAGACGGA AGAAGGCGAAAAAGA AATC
ce6_ct_v6step13_chrV.12976 + 31 1.31e-06 TTCACATGGA TGGCGCAGGAGAAGA AG
ce6_ct_v6step13_chrII.4431 + 0 1.31e-06 AGAAGAATAAGACGA ATTGTTTT
ce6_ct_v6step13_chrX.12869 - 1 1.43e-06 TGAAA AAAAGAAGAAGAAGA G
ce6_ct_v6step13_chrIV.7249 - 24 1.43e-06 G AGGAGGCGAAAACGA GGAAAACGAC
ce6_ct_v6step13_chrX.12576 + 34 1.75e-06 AAGAGCAAAA TGAAGATGGGGAAGA AAAGCTGGGA
ce6_ct_v6step13_chrX.9837 - 0 1.94e-06 TCTTATTTCA AGGCGATGGAAACGA
ce6_ct_v6step13_chrX.6184 + 4 1.94e-06 GCGT AGAAGCGGAAAAAGA GAAGAAGCCC
ce6_ct_v6step13_chrX.9814 + 15 2.30e-06 GGCAACAAGC AGAAGAAAAAGAGGC GAGAGAAAGA
ce6_ct_v6step13_chrIII.6521 - 17 2.30e-06 AGAATGAGGAGAAGA AGTAAACAAT
ce6_ct_v6step13_chrI.2675 + 24 2.82e-06 ATGCAGTTGA CGGCGAAGAAAACGC GA
ce6_ct_v6step13_chrIII.1277 + 15 4.41e-06 GGGGTCATTT TGAAGCTGAAAACGC
ce6_ct_v6step13_chrV.12924 + 18 5.19e-06 TGTATTAGCA AGAAGGAGGAAACCA TGTGTGT
ce6_ct_v6step13_chrX.7045 + 37 5.66e-06 ACCTCGCGAC AGGAGGAGAAAAGCA ATGATAATAA
ce6_ct_v6step13_chrII.13371 + 5 6.21e-06 TAATG AGGAGCAGCAGCGGC ACATCCAATC
ce6_ct_v6step13_chrI.3814 + 1 6.21e-06 A AGACGATGATGATGA TGATGAAGA
ce6_ct_v6step13_chrV.8144 + 29 7.28e-06 ATACAATCTA TGAAGATGAGAAAGC ATATCAA
ce6_ct_v6step13_chrX.7935 + 49 7.89e-06 GTAGAAAAAT AGATGATGGAGACCA GAGCGGAAGA
ce6_ct_v6step13_chrX.13670 + 0 9.34e-06 TGATGATGATGAAGA GAGAAAA
ce6_ct_v6step13_chrX.7585 - 13 1.01e-05 GCGGAA GGGGGAAGATGCAGA AAAGGTGATT
ce6_ct_v6step13_chrIII.6988 - 11 1.01e-05 TGAGGAGGAGGAGGA AAAAGAAAAA
ce6_ct_v6step13_chrX.2874 - 39 1.09e-05 ATG GTGAGATGAAGAAGC AACTGATTGG
ce6_ct_v6step13_chrII.7088 - 24 1.09e-05 TGAAAATGAG CGATGAAGAAGAAGG ATGGAAGAGG
ce6_ct_v6step13_chrII.3649 - 37 1.09e-05 GAAATAGTGT GTGAGATGAAGAGGA TTAGAGAAAT
ce6_ct_v6step13_chrX.15550 - 9 1.18e-05 GGAAAAAAAA CGAATAAGAGGAGGA ACAATGCTT
ce6_ct_v6step13_chrX.10527 + 21 1.28e-05 TTTATTAGCA TTACGACGAAGACGA TCGATCCGAG
ce6_ct_v6step13_chrV.15409 + 44 1.28e-05 GGTTTAGTGT AGAGAAAGGAGCAGA
ce6_ct_v6step13_chrIII.15 + 15 1.60e-05 AACAGAGTAG TGGAGCTGATAACGA T
ce6_ct_v6step13_chrV.14231 - 7 3.29e-05 AGAGAGTGCAGACGA CGAGAGT
Motif 14 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrX.14502 3.21e-09
-14
ce6_ct_v6step13_chrV.8495 3.21e-09
-14
ce6_ct_v6step13_chrIII.624 3.21e-09
-14
ce6_ct_v6step13_chrIII.180 3.21e-09
+14
ce6_ct_v6step13_chrIV.5515 7.33e-09
+14
ce6_ct_v6step13_chrI.9054 7.33e-09
+14
ce6_ct_v6step13_chrIII.9994 1.27e-08
-14
ce6_ct_v6step13_chrIII.3114 1.27e-08
+14
ce6_ct_v6step13_chrII.13252 1.53e-07
-14
ce6_ct_v6step13_chrX.13729 1.73e-07
-14
ce6_ct_v6step13_chrV.6981 2.17e-07
-14
ce6_ct_v6step13_chrX.10888 2.52e-07
+14
ce6_ct_v6step13_chrI.11535 2.78e-07
+14
ce6_ct_v6step13_chrX.7486 3.52e-07
-14
ce6_ct_v6step13_chrX.2473 4.06e-07
+14
ce6_ct_v6step13_chrII.3128 4.06e-07
+14
ce6_ct_v6step13_chrIV.11979 6.98e-07
-14
ce6_ct_v6step13_chrIV.6102 1.19e-06
-14
ce6_ct_v6step13_chrV.12976 1.31e-06
+14
ce6_ct_v6step13_chrII.4431 1.31e-06
+14
ce6_ct_v6step13_chrX.12869 1.43e-06
-14
ce6_ct_v6step13_chrIV.7249 1.43e-06
-14
ce6_ct_v6step13_chrX.12576 1.75e-06
+14
ce6_ct_v6step13_chrX.9837 1.94e-06
-14
ce6_ct_v6step13_chrX.6184 1.94e-06
+14
ce6_ct_v6step13_chrX.9814 2.30e-06
+14
ce6_ct_v6step13_chrIII.6521 2.30e-06
-14
ce6_ct_v6step13_chrI.2675 2.82e-06
+14
ce6_ct_v6step13_chrIII.1277 4.41e-06
+14
ce6_ct_v6step13_chrV.12924 5.19e-06
+14
ce6_ct_v6step13_chrX.7045 5.66e-06
+14
ce6_ct_v6step13_chrII.13371 6.21e-06
+14
ce6_ct_v6step13_chrI.3814 6.21e-06
+14
ce6_ct_v6step13_chrV.8144 7.28e-06
+14
ce6_ct_v6step13_chrX.7935 7.89e-06
+14
ce6_ct_v6step13_chrX.13670 9.34e-06
+14
ce6_ct_v6step13_chrX.7585 1.01e-05
-14
ce6_ct_v6step13_chrIII.6988 1.01e-05
-14
ce6_ct_v6step13_chrX.2874 1.09e-05
-14
ce6_ct_v6step13_chrII.7088 1.09e-05
-14
ce6_ct_v6step13_chrII.3649 1.09e-05
-14
ce6_ct_v6step13_chrX.15550 1.18e-05
-14
ce6_ct_v6step13_chrX.10527 1.28e-05
+14
ce6_ct_v6step13_chrV.15409 1.28e-05
+14
ce6_ct_v6step13_chrIII.15 1.60e-05
+14
ce6_ct_v6step13_chrV.14231 3.29e-05
-14
SCALE
| | | | | |
1 25 50 75 100 125
Motif 14 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 14 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 14 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 14 regular-expression
AG[AG]AGA[AT]GAA[GA]A[AC]GA
Time 19386.05 secs.
P N
MOTIF 15 width = 11 sites = 23 llr = 325 E-value = 1.9e-026
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
20.1 (bits)
Relative Entropy
20.4 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrX.59 + 0 1.66e-07 TGCGCCTTTAA AAA
ce6_ct_v6step13_chrV.5080 - 1 1.66e-07 TGCGCCTTTAA C
ce6_ct_v6step13_chrV.15410 - 20 1.66e-07 G TGCGCCTTTAA CATTTCTCGT
ce6_ct_v6step13_chrV.14693 + 4 1.66e-07 GCAA TGCGCCTTTAA
ce6_ct_v6step13_chrIV.7593 + 0 1.66e-07 TGCGCCTTTAA
ce6_ct_v6step13_chrIII.5898 + 9 1.66e-07 ATTTACGGG TGCGCCTTTAA
ce6_ct_v6step13_chrII.11913 - 14 1.66e-07 G TGCGCCTTTAA GCGGAGTACG
ce6_ct_v6step13_chrI.4184 + 21 1.66e-07 GGAAATTGCA TGCGCCTTTAA ACGATGATAT
ce6_ct_v6step13_chrI.3058 - 11 1.66e-07 TGCGCCTTTAA AAGACTACGG
ce6_ct_v6step13_chrI.28 + 24 1.66e-07 GAGTCCCACA TGCGCCTTTAA ATATGGTGTA
ce6_ct_v6step13_chrI.2099 + 3 1.66e-07 CCA TGCGCCTTTAA CCCATTT
ce6_ct_v6step13_chrI.15033 + 0 1.66e-07 TGCGCCTTTAA GAAA
ce6_ct_v6step13_chrI.13514 + 0 1.66e-07 TGCGCCTTTAA TTTATCAA
ce6_ct_v6step13_chrI.11993 + 4 1.66e-07 TTTG TGCGCCTTTAA GATTACTGTA
ce6_ct_v6step13_chrII.14096 + 20 3.26e-07 CGGCACTTCA TGCGCCTTTAG TTAATCGCGG
ce6_ct_v6step13_chrI.5799 - 3 3.26e-07 ACCGTAGTCA TGCGCCTTTGA CGC
ce6_ct_v6step13_chrV.1698 + 5 1.02e-06 ACCTA TGCACCTTTAA ATTTGGATTT
ce6_ct_v6step13_chrIV.2668 + 4 1.02e-06 TGTG TGTGCCTTTAA GAA
ce6_ct_v6step13_chrIII.14779 + 1 1.02e-06 A TGTGCCTTTAA AACTACAGTA
ce6_ct_v6step13_chrIII.13008 - 1 1.02e-06 AGAAATGGCG TGCACCTTTAA A
ce6_ct_v6step13_chrIII.12616 + 2 1.02e-06 TA TGCACCTTTAA
ce6_ct_v6step13_chrI.12887 - 12 1.02e-06 G TGTGCCTTTAA ATTTGTCATC
ce6_ct_v6step13_chrIII.12094 - 0 1.37e-06 AATGAATCCG TGCGTCTTTAA
Motif 15 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrX.59 1.66e-07
+15
ce6_ct_v6step13_chrV.5080 1.66e-07
-15
ce6_ct_v6step13_chrV.15410 1.66e-07
-15
ce6_ct_v6step13_chrV.14693 1.66e-07
+15
ce6_ct_v6step13_chrIV.7593 1.66e-07
+15
ce6_ct_v6step13_chrIII.5898 1.66e-07
+15
ce6_ct_v6step13_chrII.11913 1.66e-07
-15
ce6_ct_v6step13_chrI.4184 1.66e-07
+15
ce6_ct_v6step13_chrI.3058 1.66e-07
-15
ce6_ct_v6step13_chrI.28 1.66e-07
+15
ce6_ct_v6step13_chrI.2099 1.66e-07
+15
ce6_ct_v6step13_chrI.15033 1.66e-07
+15
ce6_ct_v6step13_chrI.13514 1.66e-07
+15
ce6_ct_v6step13_chrI.11993 1.66e-07
+15
ce6_ct_v6step13_chrII.14096 3.26e-07
+15
ce6_ct_v6step13_chrI.5799 3.26e-07
-15
ce6_ct_v6step13_chrV.1698 1.02e-06
+15
ce6_ct_v6step13_chrIV.2668 1.02e-06
+15
ce6_ct_v6step13_chrIII.14779 1.02e-06
+15
ce6_ct_v6step13_chrIII.13008 1.02e-06
-15
ce6_ct_v6step13_chrIII.12616 1.02e-06
+15
ce6_ct_v6step13_chrI.12887 1.02e-06
-15
ce6_ct_v6step13_chrIII.12094 1.37e-06
-15
SCALE
| | |
1 25 50
Motif 15 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 15 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 15 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 15 regular-expression
TGCGCCTTTAA
Time 20622.93 secs.
P N
MOTIF 16 width = 11 sites = 37 llr = 429 E-value = 1.7e-020
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
14.8 (bits)
Relative Entropy
16.7 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrII.1552 + 19 3.82e-08 GTGGGGATTG GAGAGAGTGCG CTAGAGA
ce6_ct_v6step13_chrIV.15324 + 3 1.74e-07 GAC GAGAGAGTGTG TAGAATTGAG
ce6_ct_v6step13_chrIV.14780 + 4 1.74e-07 AGGT GAGAGAGTGTG TGTGATTTGG
ce6_ct_v6step13_chrIV.14221 - 0 1.74e-07 ACCCGCTACG GAGAGAGTGTG
ce6_ct_v6step13_chrIII.442 + 0 1.74e-07 GAGAGAGTGTG GAATGCCGGA
ce6_ct_v6step13_chrIV.2822 + 1 2.73e-07 T GAGAGAGTGCA AAGAAAGAAG
ce6_ct_v6step13_chrI.1205 - 11 2.73e-07 GGGGAAAAGT GAGAGAGTGCA GAGAAAACGA
ce6_ct_v6step13_chrIV.4093 + 3 3.91e-07 AGA GAGAGAGAGTG GTGAAGACGA
ce6_ct_v6step13_chrIII.13864 - 47 3.91e-07 C GAGAGAGCGTG TGATTTGTGG
ce6_ct_v6step13_chrX.13374 - 4 4.47e-07 CACTAACTTA GAGAGTGTGCG TAAT
ce6_ct_v6step13_chrV.15302 + 0 5.92e-07 GAGAGAGCGCA GAGAAA
ce6_ct_v6step13_chrV.14264 - 7 5.92e-07 TTTC GAGAGAGCGCA GAGAAAC
ce6_ct_v6step13_chrIV.14758 + 0 5.92e-07 GAGAGAGAGCA TTAAATCAGT
ce6_ct_v6step13_chrIII.14088 + 1 1.02e-06 A GAGAGTGTGTG GGATTTGAGA
ce6_ct_v6step13_chrII.5368 - 19 1.02e-06 A GAGAGTGTGTG CAAGACGAAG
ce6_ct_v6step13_chrIV.8792 + 13 1.21e-06 ATAGGAAAGT GAGAGGGTGCA GAGAAAC
ce6_ct_v6step13_chrIV.15392 + 2 1.85e-06 AG GCGAGAGAGTG
ce6_ct_v6step13_chrII.4195 + 1 2.12e-06 A GAGAGAGTCCG CG
ce6_ct_v6step13_chrIII.15386 - 2 2.41e-06 A GAGAGAGAGGG AG
ce6_ct_v6step13_chrIV.15243 + 2 2.76e-06 AT GAGAGAGTATG GAAAATAAAG
ce6_ct_v6step13_chrIV.14752 + 1 3.11e-06 G GCGAGAGAGCA CCTGAAGGCG
ce6_ct_v6step13_chrIII.2738 - 8 3.11e-06 AT GAGAGAGTGCT GAGAAAAT
ce6_ct_v6step13_chrX.14508 + 52 3.14e-06 TCTGTCGGGT GCGAGAGGGCG
ce6_ct_v6step13_chrIV.1075 - 19 3.43e-06 GAGAGTGTGTA AGAGTGAGAG
ce6_ct_v6step13_chrII.10076 + 1 3.43e-06 A GAGAGTGTGTA AATTGAGAGA
ce6_ct_v6step13_chrIII.1618 + 0 3.72e-06 GTGAGAGAGCG AGAGACGCAG
ce6_ct_v6step13_chrV.6614 + 3 4.11e-06 CCG CAGAGAGCGCG CAC
ce6_ct_v6step13_chrV.2298 + 29 4.11e-06 AACAGTAATC GAGTGGGTGCG TGAA
ce6_ct_v6step13_chrIII.3939 + 2 4.11e-06 GA GAGAGAGAGAG
ce6_ct_v6step13_chrII.1552 + 1 4.93e-06 C GAGATAGTGTG GGGATTGGAG
ce6_ct_v6step13_chrI.14140 + 1 4.93e-06 A GAGACAGTGTG GGAATGTGAG
ce6_ct_v6step13_chrI.13708 - 16 4.93e-06 C GAGAGAGTACA CAAAATTGAG
ce6_ct_v6step13_chrX.15362 + 39 5.32e-06 ATATTAAAGA GAGAGAGAATG AAAAGAA
ce6_ct_v6step13_chrIII.11274 - 23 7.31e-06 TGTGTGT GAGTGGGAGCG AATTTTGATA
ce6_ct_v6step13_chrI.7276 - 16 7.31e-06 GAGAGAA GAGAGAAAGCG AGTCAACCTT
ce6_ct_v6step13_chrI.3698 - 17 8.68e-06 AC GAGAGAGCACA CAAATCGCAG
ce6_ct_v6step13_chrI.14502 - 25 1.54e-05 T GAGATAGTGTA TGAAATGAAG
Motif 16 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrII.1552 3.82e-08
+16
+16
ce6_ct_v6step13_chrIV.15324 1.74e-07
+16
ce6_ct_v6step13_chrIV.14780 1.74e-07
+16
ce6_ct_v6step13_chrIV.14221 1.74e-07
-16
ce6_ct_v6step13_chrIII.442 1.74e-07
+16
ce6_ct_v6step13_chrIV.2822 2.73e-07
+16
ce6_ct_v6step13_chrI.1205 2.73e-07
-16
ce6_ct_v6step13_chrIV.4093 3.91e-07
+16
ce6_ct_v6step13_chrIII.13864 3.91e-07
-16
ce6_ct_v6step13_chrX.13374 4.47e-07
-16
ce6_ct_v6step13_chrV.15302 5.92e-07
+16
ce6_ct_v6step13_chrV.14264 5.92e-07
-16
ce6_ct_v6step13_chrIV.14758 5.92e-07
+16
ce6_ct_v6step13_chrIII.14088 1.02e-06
+16
ce6_ct_v6step13_chrII.5368 1.02e-06
-16
ce6_ct_v6step13_chrIV.8792 1.21e-06
+16
ce6_ct_v6step13_chrIV.15392 1.85e-06
+16
ce6_ct_v6step13_chrII.4195 2.12e-06
+16
ce6_ct_v6step13_chrIII.15386 2.41e-06
-16
ce6_ct_v6step13_chrIV.15243 2.76e-06
+16
ce6_ct_v6step13_chrIV.14752 3.11e-06
+16
ce6_ct_v6step13_chrIII.2738 3.11e-06
-16
ce6_ct_v6step13_chrX.14508 3.14e-06
+16
ce6_ct_v6step13_chrIV.1075 3.43e-06
-16
ce6_ct_v6step13_chrII.10076 3.43e-06
+16
ce6_ct_v6step13_chrIII.1618 3.72e-06
+16
ce6_ct_v6step13_chrV.6614 4.11e-06
+16
ce6_ct_v6step13_chrV.2298 4.11e-06
+16
ce6_ct_v6step13_chrIII.3939 4.11e-06
+16
ce6_ct_v6step13_chrI.14140 4.93e-06
+16
ce6_ct_v6step13_chrI.13708 4.93e-06
-16
ce6_ct_v6step13_chrX.15362 5.32e-06
+16
ce6_ct_v6step13_chrIII.11274 7.31e-06
-16
ce6_ct_v6step13_chrI.7276 7.31e-06
-16
ce6_ct_v6step13_chrI.3698 8.68e-06
-16
ce6_ct_v6step13_chrI.14502 1.54e-05
-16
SCALE
| | |
1 25 50
Motif 16 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 16 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 16 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 16 regular-expression
GAGAGAG[TA]G[CT][GA]
Time 21845.81 secs.
P N
MOTIF 17 width = 15 sites = 11 llr = 208 E-value = 1.8e-017
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
24.1 (bits)
Relative Entropy
27.3 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrV.2897 - 2 1.15e-10 TT GTCCGAGAGGAGTAC AA
ce6_ct_v6step13_chrIII.3050 + 2 1.15e-10 TT GTCCGAGAGGAGTAC A
ce6_ct_v6step13_chrI.13329 - 9 1.15e-10 TT GTCCGAGAGGAGTAC ACGGCCGAG
ce6_ct_v6step13_chrI.4958 - 2 2.29e-10 GTCCGAGAGGACTAC AC
ce6_ct_v6step13_chrI.2447 + 5 2.29e-10 CGCTT GTCCGAGAGGACTAC AC
ce6_ct_v6step13_chrIV.12452 - 0 3.39e-10 AAAACTT GTCCGCGAGGAGTAC
ce6_ct_v6step13_chrIII.12860 - 3 5.30e-10 AAATTAAGTT GCCCGAGAGGAGTAC ACG
ce6_ct_v6step13_chrI.4272 - 0 2.04e-09 TT GTCCTCGAGGAGTAC
ce6_ct_v6step13_chrV.14583 + 21 2.49e-09 AAACAACTTT GTCCGAGAGGAATAC AC
ce6_ct_v6step13_chrX.10554 - 28 2.91e-08 AAAA GGCCTAGCGCGCTAC TTACAATAAC
ce6_ct_v6step13_chrX.5524 + 15 3.01e-08 CAGCCCCACA GGCCTAGAACACTAC TGCATAATAA
Motif 17 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrV.2897 1.15e-10
-17
ce6_ct_v6step13_chrIII.3050 1.15e-10
+17
ce6_ct_v6step13_chrI.13329 1.15e-10
-17
ce6_ct_v6step13_chrI.4958 2.29e-10
-17
ce6_ct_v6step13_chrI.2447 2.29e-10
+17
ce6_ct_v6step13_chrIV.12452 3.39e-10
-17
ce6_ct_v6step13_chrIII.12860 5.30e-10
-17
ce6_ct_v6step13_chrI.4272 2.04e-09
-17
ce6_ct_v6step13_chrV.14583 2.49e-09
+17
ce6_ct_v6step13_chrX.10554 2.91e-08
-17
ce6_ct_v6step13_chrX.5524 3.01e-08
+17
SCALE
| | |
1 25 50
Motif 17 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 17 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 17 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 17 regular-expression
GTCC[GT]AGAGGA[GC]TAC
Time 23220.74 secs.
P N
MOTIF 18 width = 11 sites = 20 llr = 268 E-value = 7.4e-014
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
16.7 (bits)
Relative Entropy
19.4 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrV.13954 + 1 3.82e-08 G GGTTCGATCCC
ce6_ct_v6step13_chrII.1622 - 21 3.82e-08 G GGTTCGATCCC CACGGGGGTA
ce6_ct_v6step13_chrI.13428 + 1 3.82e-08 A GGTTCGATCCC CGCTG
ce6_ct_v6step13_chrX.1119 + 4 5.65e-08 CCAG GGTTCGACCCC GCT
ce6_ct_v6step13_chrII.1691 + 8 5.65e-08 AGGTCACG GGTTCGACCCC CG
ce6_ct_v6step13_chrIII.2586 - 2 7.49e-08 G GGTTCGAGCCC CC
ce6_ct_v6step13_chrV.14998 - 4 1.13e-07 GTGG GGTTCGAACCC TGGT
ce6_ct_v6step13_chrIV.1291 - 0 1.13e-07 CACCTGTGG GGTTCGAACCC
ce6_ct_v6step13_chrIII.1354 - 0 2.20e-07 TCATCACCAA GGTTCGATTCC
ce6_ct_v6step13_chrIV.1300 + 2 3.15e-07 GG GGCTCGATCCC C
ce6_ct_v6step13_chrII.1699 + 0 5.14e-07 GGTTCAATCCC C
ce6_ct_v6step13_chrII.1621 + 0 5.14e-07 GGTTCAATCCC CGCGGTGGCA
ce6_ct_v6step13_chrI.13222 - 2 5.14e-07 AACACCGG GGTTCGAGTCC AC
ce6_ct_v6step13_chrX.1118 + 40 5.94e-07 TGAAGACGTT GGTTCGAATCC T
ce6_ct_v6step13_chrI.14783 + 8 7.92e-07 AGGTCACG GGTTCGTTCCC CACT
ce6_ct_v6step13_chrI.4342 - 20 8.19e-07 TGTC GGGTCGACTCC TTTCATCTAC
ce6_ct_v6step13_chrX.2874 - 3 1.10e-06 GTCCGAATTC GGGTCGGCCCC GCC
ce6_ct_v6step13_chrI.15267 - 24 2.01e-06 GGATCAATCCC ACCCAGTGGC
ce6_ct_v6step13_chrX.4566 - 6 2.26e-06 ATTCCTAACT GGATCGAATCC CATTTT
ce6_ct_v6step13_chrIII.1360 + 5 3.37e-06 ACCAA AGTTCGATTCC TC
Motif 18 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrV.13954 3.82e-08
+18
ce6_ct_v6step13_chrII.1622 3.82e-08
-18
ce6_ct_v6step13_chrI.13428 3.82e-08
+18
ce6_ct_v6step13_chrX.1119 5.65e-08
+18
ce6_ct_v6step13_chrII.1691 5.65e-08
+18
ce6_ct_v6step13_chrIII.2586 7.49e-08
-18
ce6_ct_v6step13_chrV.14998 1.13e-07
-18
ce6_ct_v6step13_chrIV.1291 1.13e-07
-18
ce6_ct_v6step13_chrIII.1354 2.20e-07
-18
ce6_ct_v6step13_chrIV.1300 3.15e-07
+18
ce6_ct_v6step13_chrII.1699 5.14e-07
+18
ce6_ct_v6step13_chrII.1621 5.14e-07
+18
ce6_ct_v6step13_chrI.13222 5.14e-07
-18
ce6_ct_v6step13_chrX.1118 5.94e-07
+18
ce6_ct_v6step13_chrI.14783 7.92e-07
+18
ce6_ct_v6step13_chrI.4342 8.19e-07
-18
ce6_ct_v6step13_chrX.2874 1.10e-06
-18
ce6_ct_v6step13_chrI.15267 2.01e-06
-18
ce6_ct_v6step13_chrX.4566 2.26e-06
-18
ce6_ct_v6step13_chrIII.1360 3.37e-06
+18
SCALE
| | |
1 25 50
Motif 18 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 18 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 18 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 18 regular-expression
GGTTCGA[TAC][CT]CC
Time 24587.65 secs.
P N
MOTIF 19 width = 13 sites = 13 llr = 202 E-value = 4.9e-010
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
18.7 (bits)
Relative Entropy
22.4 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrIV.4468 + 4 1.48e-09 GAGA TCGTGGCGAGACC AACTCAGAAA
ce6_ct_v6step13_chrIII.2908 - 0 1.48e-09 TTGCGTA TCGTGGCGAGACC
ce6_ct_v6step13_chrIV.5126 - 0 2.95e-09 CGTCAGCAGG TCGCTGCGAGACC
ce6_ct_v6step13_chrIII.5161 - 0 2.95e-09 CGTCT TCGCTGCGAGACC
ce6_ct_v6step13_chrV.1698 + 27 6.15e-09 TTTGGATTTT TCGTGGCGGGACC
ce6_ct_v6step13_chrIV.14876 + 3 9.83e-09 CGA TCGCGGCGAAACC C
ce6_ct_v6step13_chrIII.2555 - 33 1.57e-08 TT TCGTGGCAAGACC CCAATATGGG
ce6_ct_v6step13_chrIII.13074 + 23 1.78e-08 TCCCCGATTT TCGCGTCGGGACC
ce6_ct_v6step13_chrIII.8792 - 1 8.70e-08 CATTTATCTT TCGTGTCAAGACC C
ce6_ct_v6step13_chrI.14150 - 1 1.73e-07 TTT TCGTTGTGAGACC C
ce6_ct_v6step13_chrIV.2159 + 8 3.98e-07 CAAAATTT TCTCTTCGAGACC
ce6_ct_v6step13_chrII.2246 - 13 3.98e-07 CGCAAACACC GCGCGGCGAAACT GCACACAATG
ce6_ct_v6step13_chrV.8801 + 34 5.31e-07 AATGGGTTCC GCGCGGGAAGGCC GATAGAGCAC
Motif 19 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrIV.4468 1.48e-09
+19
ce6_ct_v6step13_chrIII.2908 1.48e-09
-19
ce6_ct_v6step13_chrIV.5126 2.95e-09
-19
ce6_ct_v6step13_chrIII.5161 2.95e-09
-19
ce6_ct_v6step13_chrV.1698 6.15e-09
+19
ce6_ct_v6step13_chrIV.14876 9.83e-09
+19
ce6_ct_v6step13_chrIII.2555 1.57e-08
-19
ce6_ct_v6step13_chrIII.13074 1.78e-08
+19
ce6_ct_v6step13_chrIII.8792 8.70e-08
-19
ce6_ct_v6step13_chrI.14150 1.73e-07
-19
ce6_ct_v6step13_chrIV.2159 3.98e-07
+19
ce6_ct_v6step13_chrII.2246 3.98e-07
-19
ce6_ct_v6step13_chrV.8801 5.31e-07
+19
SCALE
| | | |
1 25 50 75
Motif 19 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 19 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 19 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 19 regular-expression
TCG[CT][GT][GT]C[GA]AGACC
Time 25796.12 secs.
P N
MOTIF 20 width = 15 sites = 18 llr = 261 E-value = 4.9e-011
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
23.6 (bits)
Relative Entropy
20.9 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrIV.4298 + 2 9.45e-09 AA ATTACTGTTTCAAAA AT
ce6_ct_v6step13_chrIV.15579 - 0 9.45e-09 AAGAAAAAAA ATTACTGTTTCAAAA
ce6_ct_v6step13_chrIV.15572 + 21 9.45e-09 AGTAAAAAAA ATTACTGTTTCAAAA
ce6_ct_v6step13_chrIV.15537 + 7 9.45e-09 TCAAAAA ATTACTGTTTCAAAA CTT
ce6_ct_v6step13_chrIV.15226 - 0 9.45e-09 GGAAAAAA ATTACTGTTTCAAAA
ce6_ct_v6step13_chrIV.14986 - 0 9.45e-09 TCAAAAA ATTACTGTTTCAAAA
ce6_ct_v6step13_chrIV.4563 + 1 1.89e-08 T TTTACTGTTTCAAAA A
ce6_ct_v6step13_chrIV.4502 + 7 1.89e-08 GAAAAAA TTTACTGTTTCAAAA
ce6_ct_v6step13_chrIV.14095 + 6 8.31e-08 AAAAGT TTTACTGTTTCAGAA TT
ce6_ct_v6step13_chrIV.14988 + 16 9.22e-08 TGAAAAAAAA ATTCCTGTTTCAAAA ATTT
ce6_ct_v6step13_chrIV.14536 - 4 1.97e-07 TTAAAAAAAA TTTACAGTTTCAGAA CTTT
ce6_ct_v6step13_chrIV.5007 - 6 2.26e-07 TAGAAAAAAA ATTACGGTTTCAAAG TTTCTA
ce6_ct_v6step13_chrIV.14881 - 4 2.26e-07 TTGAAAAAAA ATTGCCGTTTCAAAA GTTT
ce6_ct_v6step13_chrIV.15327 - 14 3.42e-07 AACATTTT TCTACAGTTTCAAAA TTTTCATAAA
ce6_ct_v6step13_chrV.2298 - 13 7.86e-07 CACCCACTCG ATTACTGTTTAAACA GCTATCATCG
ce6_ct_v6step13_chrIII.7338 + 7 9.79e-07 CCAAAAG ATAACAGTTTCAAAG AGT
ce6_ct_v6step13_chrIV.15612 - 0 1.47e-06 TCACGAAAAA TATACTGTTTCAATA
ce6_ct_v6step13_chrV.8468 + 11 1.56e-06 GCCGATAAAG TTTGCAGTTTCAACC TTTACCTATG
Motif 20 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrIV.4298 9.45e-09
+20
ce6_ct_v6step13_chrIV.15579 9.45e-09
-20
ce6_ct_v6step13_chrIV.15572 9.45e-09
+20
ce6_ct_v6step13_chrIV.15537 9.45e-09
+20
ce6_ct_v6step13_chrIV.15226 9.45e-09
-20
ce6_ct_v6step13_chrIV.14986 9.45e-09
-20
ce6_ct_v6step13_chrIV.4563 1.89e-08
+20
ce6_ct_v6step13_chrIV.4502 1.89e-08
+20
ce6_ct_v6step13_chrIV.14095 8.31e-08
+20
ce6_ct_v6step13_chrIV.14988 9.22e-08
+20
ce6_ct_v6step13_chrIV.14536 1.97e-07
-20
ce6_ct_v6step13_chrIV.5007 2.26e-07
-20
ce6_ct_v6step13_chrIV.14881 2.26e-07
-20
ce6_ct_v6step13_chrIV.15327 3.42e-07
-20
ce6_ct_v6step13_chrV.2298 7.86e-07
-20
ce6_ct_v6step13_chrIII.7338 9.79e-07
+20
ce6_ct_v6step13_chrIV.15612 1.47e-06
-20
ce6_ct_v6step13_chrV.8468 1.56e-06
+20
SCALE
| |
1 25
Motif 20 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 20 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 20 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 20 regular-expression
[AT]TTAC[TA]GTTTCAAAA
Time 27045.35 secs.
P N
MOTIF 21 width = 8 sites = 45 llr = 459 E-value = 1.6e-009
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
11.4 (bits)
Relative Entropy
14.7 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrX.11826 - 0 1.46e-06 TGTGTTTGTA GCGCGCCA
ce6_ct_v6step13_chrIV.1183 + 5 1.46e-06 TTTAA GCGCGCCA A
ce6_ct_v6step13_chrIII.8604 - 3 1.46e-06 CG GCGCGCCA AAA
ce6_ct_v6step13_chrIII.13126 + 5 1.46e-06 GATTT GCGCGCCA AAA
ce6_ct_v6step13_chrI.2439 + 1 1.46e-06 C GCGCGCCA TTCGCCACGA
ce6_ct_v6step13_chrX.4500 - 14 4.52e-06 ACGGAAACAG GCGCTCCC GCACCTTATT
ce6_ct_v6step13_chrV.14062 + 4 4.52e-06 AAAT GCGCTCCA
ce6_ct_v6step13_chrIV.2823 - 12 4.52e-06 AT GCGCTCCA ACGCGAATTT
ce6_ct_v6step13_chrIV.2181 - 13 4.52e-06 GCGCTCCA TCGCACACCG
ce6_ct_v6step13_chrIV.15384 - 6 4.52e-06 C GCGCTCCA CCGCAC
ce6_ct_v6step13_chrIV.1457 + 11 4.52e-06 GTTTGAATTG GCGCTCCA CCGGACTGCC
ce6_ct_v6step13_chrII.952 + 11 4.52e-06 AATGTCAAAT GCGCTCCA
ce6_ct_v6step13_chrII.4994 - 0 4.52e-06 TGCAAGT GCGCTCCA
ce6_ct_v6step13_chrII.15052 + 4 4.52e-06 AAGT GCGCTCCA AAGAGAAAAT
ce6_ct_v6step13_chrI.2918 - 0 4.52e-06 AAGCAAAC GCGCTCCA
ce6_ct_v6step13_chrI.13936 - 9 4.52e-06 GCGCTCCA TTGCACTTG
ce6_ct_v6step13_chrV.3725 + 18 5.98e-06 GGATCCTTCC GCGCGCGC GGA
ce6_ct_v6step13_chrIV.3583 + 26 5.98e-06 TCTCTCGTTT GCGCGCGC TTTTGAG
ce6_ct_v6step13_chrI.8489 - 18 5.98e-06 GCGCGCGA AACTTGAAAA
ce6_ct_v6step13_chrX.2627 - 0 9.04e-06 TGTCATGATT GCGCGCTC
ce6_ct_v6step13_chrV.3288 + 30 9.04e-06 GACAATGCAA GCGCGCTC T
ce6_ct_v6step13_chrIII.6010 + 14 9.04e-06 CAAATGGCAA GCGCGCTC
ce6_ct_v6step13_chrX.9611 - 12 1.05e-05 GGTCAATTAA CCGCGCCA TCATCTGCCA
ce6_ct_v6step13_chrX.10285 + 0 1.99e-05 GCGCTCTA CTGAGA
ce6_ct_v6step13_chrV.1544 - 0 1.99e-05 TTCTCT GCGCTCTC
ce6_ct_v6step13_chrV.14701 + 6 1.99e-05 GAAAAC GCGCTCTA A
ce6_ct_v6step13_chrIV.6029 - 23 1.99e-05 GCGCTCTA CGGCTAAAAT
ce6_ct_v6step13_chrIII.2166 - 0 1.99e-05 GATTGCAAAT GCGCTCTA
ce6_ct_v6step13_chrII.1502 - 1 1.99e-05 ATTTCAAAC GCGCTCTA T
ce6_ct_v6step13_chrII.13854 - 7 1.99e-05 GCGCTCTA CTGAACT
ce6_ct_v6step13_chrI.14668 + 13 1.99e-05 TCGTTTCTCT GCGCTCTC
ce6_ct_v6step13_chrI.14667 - 0 1.99e-05 TCT GCGCTCTC
ce6_ct_v6step13_chrX.7341 + 65 2.30e-05 TTTCAATCCA CCGCTCCA TTCCTCCTAT
ce6_ct_v6step13_chrIV.3895 - 35 2.30e-05 GTGCGCTCCA CCGCTCCC CGTAAATCGA
ce6_ct_v6step13_chrI.7046 + 9 2.30e-05 AAAAAGAAA CCGCTCCA GAAAAGGAAA
ce6_ct_v6step13_chrX.2262 - 3 2.60e-05 ATTTCTTTGC GTGCGCCC ACC
ce6_ct_v6step13_chrIV.3317 + 40 2.60e-05 CATTCAAAAA GTGCGCCA G
ce6_ct_v6step13_chrIII.12653 - 0 2.60e-05 GCACGAGAA GTGCGCCA
ce6_ct_v6step13_chrI.8155 - 40 2.60e-05 TAGGCAAATA GTGCGCCC ACGCAAAAGT
ce6_ct_v6step13_chrIV.1550 + 35 2.75e-05 GGACGCGGAA CCGCGCGC
ce6_ct_v6step13_chrI.9678 - 12 2.75e-05 G CCGCGCGC ATACATACAC
ce6_ct_v6step13_chrIII.946 - 6 3.06e-05 GCTACGTAAC CCGCGCTA CAGTAA
ce6_ct_v6step13_chrII.11148 + 5 3.06e-05 TGCAA CCGCGCTC
ce6_ct_v6step13_chrV.4090 + 24 4.94e-05 CGGCCGAACA GTGCGCGA AAC
ce6_ct_v6step13_chrI.2764 + 20 4.94e-05 GCACACAGAA GTGCGCGA CTTGCCGTTT
Motif 21 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrX.11826 1.46e-06
-21
ce6_ct_v6step13_chrIV.1183 1.46e-06
+21
ce6_ct_v6step13_chrIII.8604 1.46e-06
-21
ce6_ct_v6step13_chrIII.13126 1.46e-06
+21
ce6_ct_v6step13_chrI.2439 1.46e-06
+21
ce6_ct_v6step13_chrX.4500 4.52e-06
-21
ce6_ct_v6step13_chrV.14062 4.52e-06
+21
ce6_ct_v6step13_chrIV.2823 4.52e-06
-21
ce6_ct_v6step13_chrIV.2181 4.52e-06
-21
ce6_ct_v6step13_chrIV.15384 4.52e-06
-21
ce6_ct_v6step13_chrIV.1457 4.52e-06
+21
ce6_ct_v6step13_chrII.952 4.52e-06
+21
ce6_ct_v6step13_chrII.4994 4.52e-06
-21
ce6_ct_v6step13_chrII.15052 4.52e-06
+21
ce6_ct_v6step13_chrI.2918 4.52e-06
-21
ce6_ct_v6step13_chrI.13936 4.52e-06
-21
ce6_ct_v6step13_chrV.3725 5.98e-06
+21
ce6_ct_v6step13_chrIV.3583 5.98e-06
+21
ce6_ct_v6step13_chrI.8489 5.98e-06
-21
ce6_ct_v6step13_chrX.2627 9.04e-06
-21
ce6_ct_v6step13_chrV.3288 9.04e-06
+21
ce6_ct_v6step13_chrIII.6010 9.04e-06
+21
ce6_ct_v6step13_chrX.9611 1.05e-05
-21
ce6_ct_v6step13_chrX.10285 1.99e-05
+21
ce6_ct_v6step13_chrV.1544 1.99e-05
-21
ce6_ct_v6step13_chrV.14701 1.99e-05
+21
ce6_ct_v6step13_chrIV.6029 1.99e-05
-21
ce6_ct_v6step13_chrIII.2166 1.99e-05
-21
ce6_ct_v6step13_chrII.1502 1.99e-05
-21
ce6_ct_v6step13_chrII.13854 1.99e-05
-21
ce6_ct_v6step13_chrI.14668 1.99e-05
+21
ce6_ct_v6step13_chrI.14667 1.99e-05
-21
ce6_ct_v6step13_chrX.7341 2.30e-05
+21
ce6_ct_v6step13_chrIV.3895 2.30e-05
-21
ce6_ct_v6step13_chrI.7046 2.30e-05
+21
ce6_ct_v6step13_chrX.2262 2.60e-05
-21
ce6_ct_v6step13_chrIV.3317 2.60e-05
+21
ce6_ct_v6step13_chrIII.12653 2.60e-05
-21
ce6_ct_v6step13_chrI.8155 2.60e-05
-21
ce6_ct_v6step13_chrIV.1550 2.75e-05
+21
ce6_ct_v6step13_chrI.9678 2.75e-05
-21
ce6_ct_v6step13_chrIII.946 3.06e-05
-21
ce6_ct_v6step13_chrII.11148 3.06e-05
+21
ce6_ct_v6step13_chrV.4090 4.94e-05
+21
ce6_ct_v6step13_chrI.2764 4.94e-05
+21
SCALE
| | | | |
1 25 50 75 100
Motif 21 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 21 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 21 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 21 regular-expression
GCGC[TG]C[CT][AC]
Time 28243.84 secs.
P N
MOTIF 22 width = 11 sites = 15 llr = 199 E-value = 6.0e-004
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
17.2 (bits)
Relative Entropy
19.2 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrV.4066 - 11 7.97e-08 TC GGTGTTTGCAC AGATTTCGCA
ce6_ct_v6step13_chrIV.4109 - 2 7.97e-08 CGTCGA GGTGTTTGCAC AC
ce6_ct_v6step13_chrIV.3307 + 1 7.97e-08 C GGTGTTTGCAC AGAATTCGAG
ce6_ct_v6step13_chrIV.15639 + 1 7.97e-08 C GGTGTTTGCAC A
ce6_ct_v6step13_chrII.6292 + 8 7.97e-08 CGTCAGTC GGTGTTTGCAC AGCTTAC
ce6_ct_v6step13_chrI.13873 - 24 7.97e-08 GC GGTGTTTGCAC TGAGTGCATT
ce6_ct_v6step13_chrI.6557 - 0 1.98e-07 C CGTGTTTGCAC
ce6_ct_v6step13_chrIV.638 - 32 7.30e-07 GCCGGACTAC GGTGTTTGCAT TGTGGAGCGT
ce6_ct_v6step13_chrII.2246 + 26 7.68e-07 TTCGCCGCGC GGTGTTTGCGG ACATTTGAAT
ce6_ct_v6step13_chrX.5366 + 15 9.77e-07 TGTGAAACGG GGTGGTTGCGC AATAGAAAAA
ce6_ct_v6step13_chrX.3412 - 3 1.21e-06 AGATTTTTGG CGCGTTTGCAC GAC
ce6_ct_v6step13_chrIII.10881 + 6 1.21e-06 CGTCGC CGTGTTGGCAC TAAAGTGACA
ce6_ct_v6step13_chrX.4155 + 48 2.25e-06 GTGTGTGGAT GGTGTCTGCAT GCGCATACTG
ce6_ct_v6step13_chrX.15486 + 19 2.25e-06 GCATACCTAA CGTGTGTGCAT ATTCAA
ce6_ct_v6step13_chrIII.7049 - 19 2.58e-06 CGTGTGTGCGG TCAAAGACAG
Motif 22 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrV.4066 7.97e-08
-22
ce6_ct_v6step13_chrIV.4109 7.97e-08
-22
ce6_ct_v6step13_chrIV.3307 7.97e-08
+22
ce6_ct_v6step13_chrIV.15639 7.97e-08
+22
ce6_ct_v6step13_chrII.6292 7.97e-08
+22
ce6_ct_v6step13_chrI.13873 7.97e-08
-22
ce6_ct_v6step13_chrI.6557 1.98e-07
-22
ce6_ct_v6step13_chrIV.638 7.30e-07
-22
ce6_ct_v6step13_chrII.2246 7.68e-07
+22
ce6_ct_v6step13_chrX.5366 9.77e-07
+22
ce6_ct_v6step13_chrX.3412 1.21e-06
-22
ce6_ct_v6step13_chrIII.10881 1.21e-06
+22
ce6_ct_v6step13_chrX.4155 2.25e-06
+22
ce6_ct_v6step13_chrX.15486 2.25e-06
+22
ce6_ct_v6step13_chrIII.7049 2.58e-06
-22
SCALE
| | | | |
1 25 50 75 100
Motif 22 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 22 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 22 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 22 regular-expression
[GC]GTGTTTGC[AG][CT]
Time 29446.54 secs.
P N
MOTIF 23 width = 11 sites = 26 llr = 295 E-value = 2.2e-002
SEQUENCE LOGO PNG LOGOS require CONVERT from ImageMagick; see MEME installation guide
Information Content
13.0 (bits)
Relative Entropy
16.4 (bits)
Download LOGO
Without SSC:[EPS][PNG]
With SSC:[EPS][PNG]
NAME STRAND START P-VALUE SITES
ce6_ct_v6step13_chrIV.822 - 1 2.18e-08 TG TCGGCCGCCGC G
ce6_ct_v6step13_chrV.15212 - 1 8.02e-08 TGGAGTTTTC TAGGCCGCGGC C
ce6_ct_v6step13_chrIII.1223 - 3 8.02e-08 C TAGGCCGCGGC CAC
ce6_ct_v6step13_chrX.1496 + 2 1.79e-07 TG TCGGCCGCGGC G
ce6_ct_v6step13_chrII.8190 - 41 6.99e-07 TACACCGCCAC TGCACACATA
ce6_ct_v6step13_chrI.14073 + 25 8.06e-07 ACAAGAAAGT TAGGCCACCAC T
ce6_ct_v6step13_chrV.10450 + 2 9.17e-07 GT TCGACCCCCGC GCGTAGTTAA
ce6_ct_v6step13_chrII.13907 - 0 1.11e-06 CCGCAAGTTG TCCGCCGCGTC
ce6_ct_v6step13_chrII.13762 + 18 1.21e-06 TTTGGTTTTT TCGGCCACCAC C
ce6_ct_v6step13_chrV.2885 - 21 1.33e-06 TAAAA TAAACCGCCGC TTAGTACTTT
ce6_ct_v6step13_chrV.10333 + 89 1.56e-06 TGTTCAAAAA TCCGCCACCAC T
ce6_ct_v6step13_chrIV.5963 - 35 1.99e-06 G TAGACCCCCTC CTTTTTCTTC
ce6_ct_v6step13_chrIV.2244 + 10 2.39e-06 TTTGGTTTTC TAGGCCGCCAA GTGAAAA
ce6_ct_v6step13_chrX.189 - 16 3.04e-06 GTGCTCGAGT TAAGCCCCCTC TCGGCTTGTT
ce6_ct_v6step13_chrX.5592 - 66 3.78e-06 GGAGGATGCA TACGCCGTCAC AAAAACGTTA
ce6_ct_v6step13_chrX.394 + 2 3.78e-06 AG TAAACCGCCTC CGATAAGAAG
ce6_ct_v6step13_chrX.11132 - 57 3.78e-06 ATGCGCCTAA TAGACCACCTC AAATGATTTA
ce6_ct_v6step13_chrI.15367 - 6 4.21e-06 TTTGC AACACCGCCGC ACAGTT
ce6_ct_v6step13_chrIII.4401 - 2 5.35e-06 TTT TCCGCCCCCGA AA
ce6_ct_v6step13_chrX.7126 + 20 6.36e-06 CATTTGAAAT TGCGCCGCGTC TTTT
ce6_ct_v6step13_chrX.3452 + 13 6.72e-06 CCTACATTTA TAAGCCGCCGG CTTCATGAGG
ce6_ct_v6step13_chrIII.7113 + 3 7.87e-06 GCA AACACCGCCAC GC
ce6_ct_v6step13_chrX.5283 - 27 8.65e-06 AGTGGGTGTA TAAACCCCGGC TACCAGTTTA
ce6_ct_v6step13_chrI.14095 - 17 1.11e-05 TAGGCCATCAC TTGTATTTCT
ce6_ct_v6step13_chrIV.1686 + 21 1.22e-05 TCGCTTTTCC TAGGCCACCTA GAAA
ce6_ct_v6step13_chrIII.2689 + 18 2.08e-05 GTGCATGCGG TACACCGTGAC G
Motif 23 block diagrams

Name		 Lowest
p-value		 Motifs
ce6_ct_v6step13_chrIV.822 2.18e-08
-23
ce6_ct_v6step13_chrV.15212 8.02e-08
-23
ce6_ct_v6step13_chrIII.1223 8.02e-08
-23
ce6_ct_v6step13_chrX.1496 1.79e-07
+23
ce6_ct_v6step13_chrII.8190 6.99e-07
-23
ce6_ct_v6step13_chrI.14073 8.06e-07
+23
ce6_ct_v6step13_chrV.10450 9.17e-07
+23
ce6_ct_v6step13_chrII.13907 1.11e-06
-23
ce6_ct_v6step13_chrII.13762 1.21e-06
+23
ce6_ct_v6step13_chrV.2885 1.33e-06
-23
ce6_ct_v6step13_chrV.10333 1.56e-06
+23
ce6_ct_v6step13_chrIV.5963 1.99e-06
-23
ce6_ct_v6step13_chrIV.2244 2.39e-06
+23
ce6_ct_v6step13_chrX.189 3.04e-06
-23
ce6_ct_v6step13_chrX.5592 3.78e-06
-23
ce6_ct_v6step13_chrX.394 3.78e-06
+23
ce6_ct_v6step13_chrX.11132 3.78e-06
-23
ce6_ct_v6step13_chrI.15367 4.21e-06
-23
ce6_ct_v6step13_chrIII.4401 5.35e-06
-23
ce6_ct_v6step13_chrX.7126 6.36e-06
+23
ce6_ct_v6step13_chrX.3452 6.72e-06
+23
ce6_ct_v6step13_chrIII.7113 7.87e-06
+23
ce6_ct_v6step13_chrX.5283 8.65e-06
-23
ce6_ct_v6step13_chrI.14095 1.11e-05
-23
ce6_ct_v6step13_chrIV.1686 1.22e-05
+23
ce6_ct_v6step13_chrIII.2689 2.08e-05
+23
SCALE
| | | | |
1 25 50 75 100
Motif 23 in BLOCKS format

to BLOCKS multiple alignment processor.
Motif 23 position-specific scoring matrix

Scan sequence databases for the best match in each sequence using MAST.
Motif 23 position-specific probability matrix

Scan sequence databases for all matches with this motif using FIMO.
Compare to known motifs in motif databases using Tomtom.
Find Genome Ontology terms associated with upstream regions matching this motif using GOMO.
Motif 23 regular-expression
T[AC][GC][GA]CC[GA]C[CG][GAT]C
Time 30789.11 secs.
P N
SUMMARY OF MOTIFS
Combined block diagrams: non-overlapping sites with p-value < 0.0001

Name		 Combined
p-value
Motifs
ce6_ct_v6step13_chrI.1 4.56e-21
+5
ce6_ct_v6step13_chrI.10233 2.62e-01
-10
ce6_ct_v6step13_chrI.10234 3.32e-07
+8
ce6_ct_v6step13_chrI.10584 2.15e-02
+11
ce6_ct_v6step13_chrI.10789 8.61e-01
-14
ce6_ct_v6step13_chrI.1100 1.50e-04
-8
ce6_ct_v6step13_chrI.11403 1.58e-02
+13
ce6_ct_v6step13_chrI.11433 6.15e-13
-13
-5
ce6_ct_v6step13_chrI.11497 5.84e-10
-19
ce6_ct_v6step13_chrI.11535 5.96e-06
+14
ce6_ct_v6step13_chrI.11616 4.18e-10
+5
ce6_ct_v6step13_chrI.1171 1.14e-11
+4
ce6_ct_v6step13_chrI.1172 5.30e-04
-12
ce6_ct_v6step13_chrI.11780 1.28e-08
-11
ce6_ct_v6step13_chrI.1188 2.56e-10
+1
ce6_ct_v6step13_chrI.11928 2.87e-02
+19
ce6_ct_v6step13_chrI.11993 3.57e-06
+15
-10
ce6_ct_v6step13_chrI.1205 1.21e-05
-16
ce6_ct_v6step13_chrI.12166 2.41e-12
+9
-11
ce6_ct_v6step13_chrI.1242 5.45e-04
-12
ce6_ct_v6step13_chrI.12478 9.37e-02
-10
ce6_ct_v6step13_chrI.12479 1.44e-01
-14
ce6_ct_v6step13_chrI.12887 9.51e-02
-15
ce6_ct_v6step13_chrI.13145 1.43e-07
+9
ce6_ct_v6step13_chrI.13190 9.71e-09
-11
ce6_ct_v6step13_chrI.13222 2.02e-09
-18
ce6_ct_v6step13_chrI.13223 7.47e-05
+7
ce6_ct_v6step13_chrI.13234 3.91e-06
+9
ce6_ct_v6step13_chrI.13235 2.12e-12
-2
ce6_ct_v6step13_chrI.13256 1.35e-03
+3
+7
ce6_ct_v6step13_chrI.1326 1.14e-09
-12
ce6_ct_v6step13_chrI.13272 8.77e-07
+7
ce6_ct_v6step13_chrI.13275 5.87e-05
+3
ce6_ct_v6step13_chrI.13291 1.34e-03
-10
+10
ce6_ct_v6step13_chrI.13293 4.19e-02
+10
+10
ce6_ct_v6step13_chrI.13329 8.34e-15
+7
-17
ce6_ct_v6step13_chrI.13339 4.12e-05
-7
ce6_ct_v6step13_chrI.13340 3.91e-06
-3
ce6_ct_v6step13_chrI.13342 2.26e-06
+3
ce6_ct_v6step13_chrI.13344 4.31e-09
+3
ce6_ct_v6step13_chrI.13395 2.50e-12
+1
ce6_ct_v6step13_chrI.13428 6.99e-08
+18
ce6_ct_v6step13_chrI.13514 7.91e-02
+15
ce6_ct_v6step13_chrI.13554 5.49e-11
-1
ce6_ct_v6step13_chrI.13611 1.61e-02
+23
ce6_ct_v6step13_chrI.13686 4.12e-09
+6
-1
ce6_ct_v6step13_chrI.13699 1.68e-12
-19
ce6_ct_v6step13_chrI.13707 9.36e-10
+1
ce6_ct_v6step13_chrI.13708 4.49e-02
-16
ce6_ct_v6step13_chrI.13736 6.15e-01
-7
ce6_ct_v6step13_chrI.13807 1.31e-03
-13
ce6_ct_v6step13_chrI.13846 6.38e-07
-1
ce6_ct_v6step13_chrI.13873 1.16e-04
-22
ce6_ct_v6step13_chrI.13925 1.55e-11
+1
ce6_ct_v6step13_chrI.13936 8.45e-06
-21
ce6_ct_v6step13_chrI.13957 1.01e-08
-1
+9
ce6_ct_v6step13_chrI.13974 3.05e-05
-1
ce6_ct_v6step13_chrI.14072 4.81e-05
+3
-3
ce6_ct_v6step13_chrI.14073 5.54e-05
+3
+23
ce6_ct_v6step13_chrI.14074 8.00e-04
+3
ce6_ct_v6step13_chrI.14085 5.50e-02
-10
+10
ce6_ct_v6step13_chrI.14086 3.76e-02
-7
ce6_ct_v6step13_chrI.14089 5.54e-16
-4
ce6_ct_v6step13_chrI.14090 1.03e-11
-4
ce6_ct_v6step13_chrI.14091 1.28e-04
-4
ce6_ct_v6step13_chrI.14095 1.23e-06
+3
-23
ce6_ct_v6step13_chrI.14105 1.50e-05
-8
ce6_ct_v6step13_chrI.14121 1.81e-08
+9
-2
ce6_ct_v6step13_chrI.14140 9.74e-05
+16
ce6_ct_v6step13_chrI.14146 2.83e-08
-13
-10
ce6_ct_v6step13_chrI.14150 7.34e-04
-19
ce6_ct_v6step13_chrI.14162 3.61e-05
+10
ce6_ct_v6step13_chrI.14329 5.51e-11
+19
ce6_ct_v6step13_chrI.14502 2.80e-04
-16
ce6_ct_v6step13_chrI.14543 4.28e-02
-7
+7
ce6_ct_v6step13_chrI.14548 9.53e-05
+21
ce6_ct_v6step13_chrI.14549 1.72e-11
+4
ce6_ct_v6step13_chrI.14561 3.67e-02
+10
+10
ce6_ct_v6step13_chrI.14578 3.45e-01
-10
ce6_ct_v6step13_chrI.1462 1.35e-06
+2
ce6_ct_v6step13_chrI.14667 1.18e-07
-21
ce6_ct_v6step13_chrI.14668 4.41e-09
+21
ce6_ct_v6step13_chrI.14783 2.51e-05
+18
ce6_ct_v6step13_chrI.14829 1.72e-09
-1
ce6_ct_v6step13_chrI.14943 2.40e-14
+4
ce6_ct_v6step13_chrI.15033 1.78e-03
+15
ce6_ct_v6step13_chrI.15129 2.64e-04
+10
ce6_ct_v6step13_chrI.15202 2.71e-06
+5
ce6_ct_v6step13_chrI.15267 2.84e-03
-18
ce6_ct_v6step13_chrI.15293 7.09e-15
-5
ce6_ct_v6step13_chrI.1534 6.81e-12
+4
ce6_ct_v6step13_chrI.15367 1.02e-10
-23
ce6_ct_v6step13_chrI.15425 3.57e-03
+12
ce6_ct_v6step13_chrI.15443 4.66e-15
+5
ce6_ct_v6step13_chrI.15484 9.13e-12
+1
ce6_ct_v6step13_chrI.15654 1.59e-16
-4
ce6_ct_v6step13_chrI.15726 1.77e-08
+9
ce6_ct_v6step13_chrI.1600 2.44e-04
+19
ce6_ct_v6step13_chrI.1671 5.61e-05
+8
ce6_ct_v6step13_chrI.1700 3.92e-03
+11
ce6_ct_v6step13_chrI.1757 3.08e-06
-8
ce6_ct_v6step13_chrI.18 1.92e-07
+3
ce6_ct_v6step13_chrI.1824 2.69e-08
-12
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ce6_ct_v6step13_chrV.11106 2.21e-09
-9
ce6_ct_v6step13_chrV.11273 2.74e-01
+21
ce6_ct_v6step13_chrV.11398 8.17e-05
+14
-1
ce6_ct_v6step13_chrV.12017 4.84e-06
+12
ce6_ct_v6step13_chrV.12290 6.54e-11
+12
ce6_ct_v6step13_chrV.12341 1.21e-01
-10
ce6_ct_v6step13_chrV.12415 9.56e-06
+13
ce6_ct_v6step13_chrV.1283 9.43e-09
+21
ce6_ct_v6step13_chrV.12867 6.25e-05
+12
ce6_ct_v6step13_chrV.12924 1.63e-01
+14
ce6_ct_v6step13_chrV.12976 2.02e-06
+14
ce6_ct_v6step13_chrV.13569 2.20e-13
-3
ce6_ct_v6step13_chrV.13873 9.78e-12
-12
ce6_ct_v6step13_chrV.13950 1.49e-09
-1
ce6_ct_v6step13_chrV.13954 2.14e-05
+18
ce6_ct_v6step13_chrV.14041 3.77e-09
+1
ce6_ct_v6step13_chrV.14062 1.85e-04
+21
ce6_ct_v6step13_chrV.14066 1.72e-10
+12
ce6_ct_v6step13_chrV.14118 1.14e-05
+7
ce6_ct_v6step13_chrV.14197 2.37e-07
-13
ce6_ct_v6step13_chrV.14231 6.89e-08
-14
ce6_ct_v6step13_chrV.14232 1.61e-13
-6
ce6_ct_v6step13_chrV.14264 2.13e-10
-16
ce6_ct_v6step13_chrV.14300 7.72e-09
-3
ce6_ct_v6step13_chrV.14313 3.43e-13
+2
ce6_ct_v6step13_chrV.14339 2.12e-06
-13
ce6_ct_v6step13_chrV.14462 2.35e-08
-3
ce6_ct_v6step13_chrV.14583 1.81e-05
+17
ce6_ct_v6step13_chrV.14693 6.71e-05
+15
ce6_ct_v6step13_chrV.14701 7.99e-08
+4
ce6_ct_v6step13_chrV.14703 2.36e-01
-12
ce6_ct_v6step13_chrV.14704 3.25e-10
+12
ce6_ct_v6step13_chrV.14731 2.06e-08
+1
ce6_ct_v6step13_chrV.14746 2.95e-07
+8
ce6_ct_v6step13_chrV.14752 2.74e-02
-7
ce6_ct_v6step13_chrV.14803 1.02e-02
+18
ce6_ct_v6step13_chrV.14998 1.07e-08
-18
ce6_ct_v6step13_chrV.15000 1.27e-10
+1
ce6_ct_v6step13_chrV.15001 1.78e-06
-11
ce6_ct_v6step13_chrV.15048 6.67e-03
-10
-10
ce6_ct_v6step13_chrV.15065 1.25e-09
-1
ce6_ct_v6step13_chrV.15164 9.06e-01
-3
ce6_ct_v6step13_chrV.15166 8.29e-14
-18
ce6_ct_v6step13_chrV.15212 3.45e-11
-23
ce6_ct_v6step13_chrV.15301 1.45e-03
+13
ce6_ct_v6step13_chrV.15302 1.12e-11
+16
ce6_ct_v6step13_chrV.15345 8.58e-08
+3
ce6_ct_v6step13_chrV.15356 7.18e-08
+3
+7
ce6_ct_v6step13_chrV.15409 6.81e-04
+14
ce6_ct_v6step13_chrV.15410 3.13e-02
-15
ce6_ct_v6step13_chrV.1544 4.18e-08
-21
ce6_ct_v6step13_chrV.1570 1.25e-07
+16
ce6_ct_v6step13_chrV.1698 4.68e-08
+15
+19
ce6_ct_v6step13_chrV.1722 1.31e-13
+2
ce6_ct_v6step13_chrV.2034 2.18e-09
+6
-15
ce6_ct_v6step13_chrV.2206 1.88e-03
-11
ce6_ct_v6step13_chrV.2218 5.79e-09
-1
+1
ce6_ct_v6step13_chrV.2236 6.85e-15
-2
ce6_ct_v6step13_chrV.2298 1.32e-06
-20
+16
ce6_ct_v6step13_chrV.2336 9.02e-12
+11
-2
ce6_ct_v6step13_chrV.2408 3.40e-09
-1
ce6_ct_v6step13_chrV.2409 2.56e-10
+1
ce6_ct_v6step13_chrV.2440 9.33e-03
-17
ce6_ct_v6step13_chrV.2453 1.06e-02
-21
ce6_ct_v6step13_chrV.2760 1.08e-06
-2
ce6_ct_v6step13_chrV.2805 4.30e-07
+7
ce6_ct_v6step13_chrV.2885 3.06e-03
-23
ce6_ct_v6step13_chrV.2897 3.08e-10
-17
ce6_ct_v6step13_chrV.3276 3.85e-01
-10
ce6_ct_v6step13_chrV.3288 3.42e-03
+21
ce6_ct_v6step13_chrV.3312 3.38e-06
+5
ce6_ct_v6step13_chrV.3313 1.16e-04
+9
ce6_ct_v6step13_chrV.3337 1.68e-08
-5
ce6_ct_v6step13_chrV.3603 7.86e-02
+11
ce6_ct_v6step13_chrV.3653 3.62e-04
-6
ce6_ct_v6step13_chrV.3725 1.53e-09
-9
+21
ce6_ct_v6step13_chrV.4066 2.33e-03
-22
ce6_ct_v6step13_chrV.4090 7.45e-06
+9
+21
ce6_ct_v6step13_chrV.4121 2.16e-01
+13
ce6_ct_v6step13_chrV.4306 7.96e-03
+22
ce6_ct_v6step13_chrV.4402 3.10e-08
+14
ce6_ct_v6step13_chrV.4408 8.89e-05
+4
ce6_ct_v6step13_chrV.4697 3.11e-05
+13
ce6_ct_v6step13_chrV.4698 9.93e-14
-5
ce6_ct_v6step13_chrV.4956 3.29e-17
+19
-4
ce6_ct_v6step13_chrV.499 1.16e-03
+13
ce6_ct_v6step13_chrV.5080 8.05e-06
-15
ce6_ct_v6step13_chrV.53 3.25e-04
+5
ce6_ct_v6step13_chrV.5671 9.68e-05
-1
ce6_ct_v6step13_chrV.5704 2.21e-10
+6
ce6_ct_v6step13_chrV.586 5.61e-12
+12
ce6_ct_v6step13_chrV.6614 1.08e-12
+16
ce6_ct_v6step13_chrV.687 2.06e-08
-1
ce6_ct_v6step13_chrV.6981 4.81e-02
-14
ce6_ct_v6step13_chrV.7017 7.13e-03
-9
ce6_ct_v6step13_chrV.7235 1.19e-05
+6
ce6_ct_v6step13_chrV.7461 4.74e-06
+1
ce6_ct_v6step13_chrV.7521 3.03e-08
-13
ce6_ct_v6step13_chrV.7659 3.70e-04
-17
ce6_ct_v6step13_chrV.8144 1.04e-01
+14
ce6_ct_v6step13_chrV.818 1.92e-10
-19
ce6_ct_v6step13_chrV.8289 6.37e-05
-16
ce6_ct_v6step13_chrV.8291 5.03e-02
+4
ce6_ct_v6step13_chrV.8301 9.62e-02
+8
ce6_ct_v6step13_chrV.8452 1.26e-03
-6
ce6_ct_v6step13_chrV.8455 6.22e-02
+13
ce6_ct_v6step13_chrV.8467 2.22e-03
-8
ce6_ct_v6step13_chrV.8468 3.26e-01
+20
ce6_ct_v6step13_chrV.8495 1.22e-03
-14
ce6_ct_v6step13_chrV.864 1.36e-06
+6
ce6_ct_v6step13_chrV.8744 1.73e-05
-6
ce6_ct_v6step13_chrV.8801 2.17e-17
-5
+19
-4
ce6_ct_v6step13_chrV.8870 1.49e-11
-9
-13
+7
ce6_ct_v6step13_chrV.8952 1.24e-11
+9
ce6_ct_v6step13_chrV.900 9.85e-01
+20
ce6_ct_v6step13_chrV.9107 3.24e-07
+8
ce6_ct_v6step13_chrV.9110 5.06e-04
-14
ce6_ct_v6step13_chrV.9384 6.93e-02
-21
ce6_ct_v6step13_chrV.9444 3.25e-04
-4
ce6_ct_v6step13_chrV.9493 8.02e-14
-9
ce6_ct_v6step13_chrV.9602 8.80e-01
+10
ce6_ct_v6step13_chrV.9603 2.14e-02
-14
ce6_ct_v6step13_chrV.9629 1.64e-07
+9
ce6_ct_v6step13_chrV.9675 5.57e-01
-6
ce6_ct_v6step13_chrV.9976 4.46e-09
-9
ce6_ct_v6step13_chrX.10285 1.04e-02
+21
ce6_ct_v6step13_chrX.10527 1.86e-02
+14
ce6_ct_v6step13_chrX.10554 2.70e-07
-17
ce6_ct_v6step13_chrX.10557 3.74e-01
+10
ce6_ct_v6step13_chrX.10887 2.02e-03
-1
ce6_ct_v6step13_chrX.10888 1.31e-04
-1
+14
ce6_ct_v6step13_chrX.10978 2.36e-01
-23
ce6_ct_v6step13_chrX.11132 5.18e-03
-23
ce6_ct_v6step13_chrX.11152 3.60e-07
+9
ce6_ct_v6step13_chrX.1118 7.06e-03
+18
ce6_ct_v6step13_chrX.1119 1.44e-11
+18
ce6_ct_v6step13_chrX.1121 6.88e-10
-3
ce6_ct_v6step13_chrX.11233 4.65e-01
-10
ce6_ct_v6step13_chrX.11576 2.43e-04
+18
ce6_ct_v6step13_chrX.11579 1.95e-02
-14
ce6_ct_v6step13_chrX.11826 3.23e-05
-21
ce6_ct_v6step13_chrX.11827 3.42e-04
+5
ce6_ct_v6step13_chrX.11897 6.38e-01
+22
ce6_ct_v6step13_chrX.12082 2.21e-05
-7
ce6_ct_v6step13_chrX.1210 7.86e-11
-7
+6
ce6_ct_v6step13_chrX.12296 4.04e-05
-5
ce6_ct_v6step13_chrX.12497 3.63e-10
+9
ce6_ct_v6step13_chrX.12576 1.52e-01
+14
ce6_ct_v6step13_chrX.12745 1.22e-16
-5
ce6_ct_v6step13_chrX.12747 2.38e-03
-13
ce6_ct_v6step13_chrX.12753 8.99e-07
-2
-22
ce6_ct_v6step13_chrX.12844 3.04e-02
+16
ce6_ct_v6step13_chrX.12869 2.15e-01
-14
ce6_ct_v6step13_chrX.13 5.51e-11
+19
ce6_ct_v6step13_chrX.13098 2.61e-01
+14
ce6_ct_v6step13_chrX.1320 1.88e-05
+5
ce6_ct_v6step13_chrX.1322 3.91e-04
+6
ce6_ct_v6step13_chrX.1327 3.04e-11
+4
+5
+7
-13
ce6_ct_v6step13_chrX.13369 2.69e-02
-6
ce6_ct_v6step13_chrX.13374 2.37e-03
-16
ce6_ct_v6step13_chrX.13559 8.36e-03
-13
ce6_ct_v6step13_chrX.13651 8.09e-03
+13
ce6_ct_v6step13_chrX.13670 7.82e-02
+14
ce6_ct_v6step13_chrX.13698 2.90e-06
-8
ce6_ct_v6step13_chrX.13729 4.50e-06
+9
+21
+5
-14
-14
ce6_ct_v6step13_chrX.13878 6.88e-02
+23
+17
ce6_ct_v6step13_chrX.13904 8.89e-09
+6
ce6_ct_v6step13_chrX.14500 5.68e-03
+4
-5
+5
ce6_ct_v6step13_chrX.14501 4.63e-02
-7
ce6_ct_v6step13_chrX.14502 2.78e-02
-14
ce6_ct_v6step13_chrX.14508 4.61e-06
+16
ce6_ct_v6step13_chrX.14675 5.02e-05
-4
ce6_ct_v6step13_chrX.14882 1.00e-04
-11
+9
ce6_ct_v6step13_chrX.1496 1.05e-10
+23
ce6_ct_v6step13_chrX.14988 4.83e-04
-6
ce6_ct_v6step13_chrX.15362 1.66e-01
+16
ce6_ct_v6step13_chrX.15414 7.05e-15
+4
ce6_ct_v6step13_chrX.15486 3.89e-02
+22
ce6_ct_v6step13_chrX.15550 4.32e-01
-14
ce6_ct_v6step13_chrX.15614 1.76e-10
-2
ce6_ct_v6step13_chrX.15896 3.64e-05
+11
ce6_ct_v6step13_chrX.15953 5.82e-01
+18
ce6_ct_v6step13_chrX.1685 3.93e-03
+16
ce6_ct_v6step13_chrX.1759 1.39e-04
-11
ce6_ct_v6step13_chrX.189 4.89e-10
-23
-21
ce6_ct_v6step13_chrX.190 1.01e-03
-5
ce6_ct_v6step13_chrX.1912 9.45e-05
+21
ce6_ct_v6step13_chrX.2010 2.25e-03
-7
ce6_ct_v6step13_chrX.2028 1.07e-02
+6
ce6_ct_v6step13_chrX.2029 6.78e-09
-5
ce6_ct_v6step13_chrX.2065 3.28e-07
-11
ce6_ct_v6step13_chrX.2262 1.55e-06
-21
+2
ce6_ct_v6step13_chrX.2473 3.55e-01
+14
ce6_ct_v6step13_chrX.2588 3.49e-07
-17
ce6_ct_v6step13_chrX.2601 1.19e-04
-5
ce6_ct_v6step13_chrX.2627 9.52e-03
-21
ce6_ct_v6step13_chrX.263 2.06e-01
+3
ce6_ct_v6step13_chrX.2789 3.07e-01
+14
ce6_ct_v6step13_chrX.2874 1.82e-12
-18
+9
-14
ce6_ct_v6step13_chrX.3088 7.93e-03
-10
ce6_ct_v6step13_chrX.3122 4.49e-03
-5
ce6_ct_v6step13_chrX.3173 4.31e-04
+19
ce6_ct_v6step13_chrX.3229 1.89e-09
+5
ce6_ct_v6step13_chrX.3364 8.06e-10
+11
ce6_ct_v6step13_chrX.3412 2.58e-05
-22
-8
ce6_ct_v6step13_chrX.3452 4.62e-04
+23
-20
ce6_ct_v6step13_chrX.3471 1.83e-01
+19
ce6_ct_v6step13_chrX.3688 7.04e-03
-17
ce6_ct_v6step13_chrX.3702 6.74e-01
+14
ce6_ct_v6step13_chrX.3765 2.80e-01
-10
ce6_ct_v6step13_chrX.3872 5.61e-02
-14
ce6_ct_v6step13_chrX.3874 4.64e-05
+2
ce6_ct_v6step13_chrX.3876 5.46e-07
+7
ce6_ct_v6step13_chrX.39 3.04e-03
+9
ce6_ct_v6step13_chrX.394 1.36e-01
+23
ce6_ct_v6step13_chrX.40 2.66e-04
+7
ce6_ct_v6step13_chrX.41 7.32e-06
-3
ce6_ct_v6step13_chrX.4155 1.64e-02
+22
ce6_ct_v6step13_chrX.4332 2.98e-05
-14
ce6_ct_v6step13_chrX.4473 4.56e-05
-9
ce6_ct_v6step13_chrX.4500 2.87e-10
-21
-6
ce6_ct_v6step13_chrX.4566 1.36e-02
-18
ce6_ct_v6step13_chrX.4587 9.52e-02
+4
ce6_ct_v6step13_chrX.4588 7.21e-03
-12
ce6_ct_v6step13_chrX.4805 8.40e-04
+22
+11
ce6_ct_v6step13_chrX.5116 8.96e-03
-8
ce6_ct_v6step13_chrX.5283 2.88e-03
+4
-23
ce6_ct_v6step13_chrX.5365 4.91e-02
-16
ce6_ct_v6step13_chrX.5366 2.47e-06
+22
ce6_ct_v6step13_chrX.5434 1.10e-07
+6
ce6_ct_v6step13_chrX.5445 2.00e-08
+21
+16
ce6_ct_v6step13_chrX.5493 9.26e-02
+4
ce6_ct_v6step13_chrX.5513 2.88e-09
+11
ce6_ct_v6step13_chrX.5517 2.42e-07
+6
-22
+9
ce6_ct_v6step13_chrX.5518 1.45e-03
-9
ce6_ct_v6step13_chrX.5521 2.98e-14
-5
ce6_ct_v6step13_chrX.5523 2.83e-09
+9
ce6_ct_v6step13_chrX.5524 3.23e-10
+17
ce6_ct_v6step13_chrX.5544 5.62e-01
-21
ce6_ct_v6step13_chrX.5568 4.51e-04
+5
ce6_ct_v6step13_chrX.5592 2.89e-08
-23
-1
-23
ce6_ct_v6step13_chrX.5612 3.32e-04
-5
ce6_ct_v6step13_chrX.5750 3.43e-03
+10
ce6_ct_v6step13_chrX.5792 4.32e-07
-7
+5
-2
ce6_ct_v6step13_chrX.5830 3.19e-05
+16
ce6_ct_v6step13_chrX.59 7.68e-04
+15
ce6_ct_v6step13_chrX.6018 1.95e-03
+5
ce6_ct_v6step13_chrX.6026 1.35e-02
+3
ce6_ct_v6step13_chrX.6183 3.46e-04
-22
ce6_ct_v6step13_chrX.6184 7.54e-05
+14
-2
ce6_ct_v6step13_chrX.6741 6.25e-01
-14
ce6_ct_v6step13_chrX.6823 5.10e-05
+9
ce6_ct_v6step13_chrX.6847 4.20e-02
-15
ce6_ct_v6step13_chrX.6861 9.36e-03
-12
ce6_ct_v6step13_chrX.7045 2.68e-03
+14
ce6_ct_v6step13_chrX.7087 1.42e-06
+9
ce6_ct_v6step13_chrX.7126 5.79e-10
+4
ce6_ct_v6step13_chrX.7341 8.87e-07
-6
-12
+21
ce6_ct_v6step13_chrX.7485 2.48e-01
+10
ce6_ct_v6step13_chrX.7486 3.36e-04
-14
+23
ce6_ct_v6step13_chrX.7585 9.00e-05
-14
ce6_ct_v6step13_chrX.7633 1.02e-02
-13
ce6_ct_v6step13_chrX.7642 8.48e-03
+22
+17
ce6_ct_v6step13_chrX.7781 3.76e-05
+5
ce6_ct_v6step13_chrX.7827 1.53e-10
+2
ce6_ct_v6step13_chrX.7842 1.28e-03
+13
ce6_ct_v6step13_chrX.7935 1.64e-03
+11
+14
ce6_ct_v6step13_chrX.7940 2.84e-08
+5
ce6_ct_v6step13_chrX.7948 8.88e-03
+22
ce6_ct_v6step13_chrX.8108 4.40e-06
-11
ce6_ct_v6step13_chrX.8577 3.66e-04
+23
ce6_ct_v6step13_chrX.8629 1.55e-02
-8
ce6_ct_v6step13_chrX.88 5.19e-01
-7
ce6_ct_v6step13_chrX.8929 1.51e-02
+5
ce6_ct_v6step13_chrX.9604 9.04e-02
+4
ce6_ct_v6step13_chrX.9611 6.19e-03
-21
ce6_ct_v6step13_chrX.9720 4.50e-11
+4
ce6_ct_v6step13_chrX.9814 6.79e-06
+14
+6
ce6_ct_v6step13_chrX.9837 5.35e-06
-14
SCALE
| | | | | | |
1 25 50 75 100 125 150

Motif summary in machine readable format.
Stopped because Stopped because motif E-value > 5.00e-02..


CPU: redivivus

EXPLANATION OF MEME RESULTS

The MEME results consist of:

MOTIFS

For each motif that it discovers in the training set, MEME prints the following information: