[BEGIN]

REFERENCE HAIRPIN
*******************************************************************************************
ID                 : mmu-mir-99b
DESCRIPTION        : mmu-mir-99b MI0000147 Mus musculus miR-99b stem-loop
CHROMOSOME         : 17
SPAN               : 17967152 - 17967221
LENGTH             : 70
SEQUENCE           : GGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCACACAAGCTCGTGTCTGTGGGTCCGTGTC
OVERHANG THRESHOLD : 40%
*******************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-99b
ACCID      : MI0000147
PARENT     : mmu-mir-99b
CHROMOSOME : 17
START      : 17967152
STOP       : 17967221
OFFSET     : 7..28
SEQUENCE   : CACCCGTAGAACCGACCTTGCG
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-99b*
ACCID      : MI0000147
PARENT     : mmu-mir-99b
CHROMOSOME : 17
START      : 17967152
STOP       : 17967221
OFFSET     : 45..66
SEQUENCE   : CAAGCTCGTGTCTGTGGGTCCG
STRAND     : +
******************************



*** MATURE ***
______________________________________________________________________
GGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCACACAAGCTCGTGTCTGTGGGTCCGTGTC REF                  17                   17967152 - 17967221  
      CACCCGTAGAACCGACCTTGCG                                           MATURE               17                   17967159 - 17967249  mmu-miR-99b          +                    
                                            CAAGCTCGTGTCTGTGGGTCCG     MATURESTAR           17                   17967197 - 17967287  mmu-miR-99b*         +                    
______________________________________________________________________

                                                                  -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......CACCCGTAGAACCGACCTTGC............................................   37719_4_0_0_0_0_4       MATURE            8         9.88            4        12.90            4         8.00                        21   
......CACCCGTAGAACCGAaCTTGC............................................   18813_5_0_0_0_0_3       MATURE            8         9.88            5        16.13            3         6.00                      15A5   
......CACCCGTAGAACCGACCTTGCt...........................................   29135_2_0_0_0_0_4       MATURE            6         7.41            2         6.45            4         8.00                        21   
......CACCCGTAGAACCGAtCTTGC............................................   31875_1_0_0_0_0_4       MATURE            5         6.17            1         3.23            4         8.00                      15T5   
......CACCCGTAGAACCGACaTTGC............................................     674_1_0_0_0_0_4       MATURE            5         6.17            1         3.23            4         8.00                      16A4   
......CACCCGTAGAACCGACCaTGC............................................   23382_2_0_0_0_0_2       MATURE            4         4.94            2         6.45            2         4.00                      17A3   
......CACCCGTAGAACCGACCaTGCG...........................................   37315_3_0_0_0_0_1       MATURE            4         4.94            3         9.68            1         2.00                      17A4   
.......ACCCGTAGAACCGACCTTGCa...........................................   10749_1_0_0_0_0_2       MATURE            3         3.70            1         3.23            2         4.00                        20   
......CACCCGTAGAACCGACCTTG.............................................   40650_0_0_0_0_0_3       MATURE            3         3.70            0         0.00            3         6.00                        20   
......CACCCGTAGAACCGACCTTaCGt..........................................   35449_1_0_0_0_0_2       MATURE            3         3.70            1         3.23            2         4.00                      19A2   
......CACCCGTAGAACCGACCTTGCGt..........................................   27979_2_0_0_0_0_1       MATURE            3         3.70            2         6.45            1         2.00                        22   
......CACCCGTAGAACCGACCTTGCG...........................................   33355_0_0_0_0_0_3       MATURE            3         3.70            0         0.00            3         6.00                        22   
......CACCCGTAGAACCGACCTaGCG...........................................   24782_2_0_0_0_0_0       MATURE            2         2.47            2         6.45            0         0.00                      18A3   
......CACCCGTAGAACCGACCaTGCGt..........................................    2800_1_0_0_0_0_1       MATURE            2         2.47            1         3.23            1         2.00                      17A4   
......CACCCGTAGAACCGACCTaGC............................................    4030_0_0_0_0_0_2       MATURE            2         2.47            0         0.00            2         4.00                      18A2   
......CACCCGTAGAACCGACCaTGCa...........................................   31179_0_0_0_0_0_2       MATURE            2         2.47            0         0.00            2         4.00                      17A3   
......CACCCGTAGAACCGACCcTGCGt..........................................   23502_0_0_0_0_0_2       MATURE            2         2.47            0         0.00            2         4.00                      17C4   
......CACCCGTAGAACCGACCTcGCG...........................................    3363_1_0_0_0_0_0       MATURE            1         1.23            1         3.23            0         0.00                      18C3   
......CACCCGTAGAACCGACCgTGCGa..........................................   40120_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.00                      17G4   
......CACCCGTAGAACCGACtTTGC............................................   14418_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.00                      16T4   
......CACCCGTAGAACCGACCTaGCGt..........................................   12934_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.00                      18A3   
......CACCCGTAGAACCGACCaTGCGc..........................................   39607_1_0_0_0_0_0       MATURE            1         1.23            1         3.23            0         0.00                      17A4   
......CACCCGTAGAACCGACCTcGCGa..........................................    9277_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.00                      18C3   
......CACCCGTAGAACCGACCTTGa............................................   24151_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.00                        20   
......CACCCGTAGAACCGACCTTGCGc..........................................   16290_1_0_0_0_0_0       MATURE            1         1.23            1         3.23            0         0.00                        22   
......CACCCGTAGAACCGACCTTGCGGt.........................................   17529_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.00                        23   
......CACCCGTAGAACCGACCTaGCc...........................................   23598_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.00                      18A2   
......CACCCGTAGAACCGACaTTGCG...........................................   42530_1_0_0_0_0_0       MATURE            1         1.23            1         3.23            0         0.00                      16A5   
.....CCACCCGTAGAACCGACCTTG.............................................   14697_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.00                        21   
......CACCCGTAGAACCGACCTcGCGt..........................................   36085_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.00                      18C3   
.....CCACCCGTAGAACCGACCTTa.............................................   35653_1_0_0_0_0_0       MATURE            1         1.23            1         3.23            0         0.00                        20   
......CACCCGTAGAACCGACCTTaCGa..........................................   27579_0_0_0_0_0_1       MATURE            1         1.23            0         0.00            1         2.00                      19A2   
......CACCCGTAGAACCGACCTTGCa...........................................     355_1_0_0_0_0_0       MATURE            1         1.23            1         3.23            0         0.00                        21   
                                                                                                           ----------                ----------                ----------   
                                                                                                                   81                        31                        50                                          
                                                                                                                                        (38.27)                   (61.73)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              31              50              81         100.00%
                     ----------      ----------      ----------                
                             31              50              81                



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