[BEGIN]
REFERENCE HAIRPIN
*******************************************************************************************
ID : mmu-mir-99b
DESCRIPTION : mmu-mir-99b MI0000147 Mus musculus miR-99b stem-loop
CHROMOSOME : 17
SPAN : 17967152 - 17967221
LENGTH : 70
SEQUENCE : GGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCACACAAGCTCGTGTCTGTGGGTCCGTGTC
OVERHANG THRESHOLD : 40%
*******************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-99b
ACCID : MI0000147
PARENT : mmu-mir-99b
CHROMOSOME : 17
START : 17967152
STOP : 17967221
OFFSET : 7..28
SEQUENCE : CACCCGTAGAACCGACCTTGCG
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-99b*
ACCID : MI0000147
PARENT : mmu-mir-99b
CHROMOSOME : 17
START : 17967152
STOP : 17967221
OFFSET : 45..66
SEQUENCE : CAAGCTCGTGTCTGTGGGTCCG
STRAND : +
******************************
*** MATURE ***
______________________________________________________________________
GGCACCCACCCGTAGAACCGACCTTGCGGGGCCTTCGCCGCACACAAGCTCGTGTCTGTGGGTCCGTGTC REF 17 17967152 - 17967221
CACCCGTAGAACCGACCTTGCG MATURE 17 17967159 - 17967249 mmu-miR-99b +
CAAGCTCGTGTCTGTGGGTCCG MATURESTAR 17 17967197 - 17967287 mmu-miR-99b* +
______________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......CACCCGTAGAACCGACCTTGC............................................ 37719_4_0_0_0_0_4 MATURE 8 9.88 4 12.90 4 8.00 21
......CACCCGTAGAACCGAaCTTGC............................................ 18813_5_0_0_0_0_3 MATURE 8 9.88 5 16.13 3 6.00 15A5
......CACCCGTAGAACCGACCTTGCt........................................... 29135_2_0_0_0_0_4 MATURE 6 7.41 2 6.45 4 8.00 21
......CACCCGTAGAACCGAtCTTGC............................................ 31875_1_0_0_0_0_4 MATURE 5 6.17 1 3.23 4 8.00 15T5
......CACCCGTAGAACCGACaTTGC............................................ 674_1_0_0_0_0_4 MATURE 5 6.17 1 3.23 4 8.00 16A4
......CACCCGTAGAACCGACCaTGC............................................ 23382_2_0_0_0_0_2 MATURE 4 4.94 2 6.45 2 4.00 17A3
......CACCCGTAGAACCGACCaTGCG........................................... 37315_3_0_0_0_0_1 MATURE 4 4.94 3 9.68 1 2.00 17A4
.......ACCCGTAGAACCGACCTTGCa........................................... 10749_1_0_0_0_0_2 MATURE 3 3.70 1 3.23 2 4.00 20
......CACCCGTAGAACCGACCTTG............................................. 40650_0_0_0_0_0_3 MATURE 3 3.70 0 0.00 3 6.00 20
......CACCCGTAGAACCGACCTTaCGt.......................................... 35449_1_0_0_0_0_2 MATURE 3 3.70 1 3.23 2 4.00 19A2
......CACCCGTAGAACCGACCTTGCGt.......................................... 27979_2_0_0_0_0_1 MATURE 3 3.70 2 6.45 1 2.00 22
......CACCCGTAGAACCGACCTTGCG........................................... 33355_0_0_0_0_0_3 MATURE 3 3.70 0 0.00 3 6.00 22
......CACCCGTAGAACCGACCTaGCG........................................... 24782_2_0_0_0_0_0 MATURE 2 2.47 2 6.45 0 0.00 18A3
......CACCCGTAGAACCGACCaTGCGt.......................................... 2800_1_0_0_0_0_1 MATURE 2 2.47 1 3.23 1 2.00 17A4
......CACCCGTAGAACCGACCTaGC............................................ 4030_0_0_0_0_0_2 MATURE 2 2.47 0 0.00 2 4.00 18A2
......CACCCGTAGAACCGACCaTGCa........................................... 31179_0_0_0_0_0_2 MATURE 2 2.47 0 0.00 2 4.00 17A3
......CACCCGTAGAACCGACCcTGCGt.......................................... 23502_0_0_0_0_0_2 MATURE 2 2.47 0 0.00 2 4.00 17C4
......CACCCGTAGAACCGACCTcGCG........................................... 3363_1_0_0_0_0_0 MATURE 1 1.23 1 3.23 0 0.00 18C3
......CACCCGTAGAACCGACCgTGCGa.......................................... 40120_0_0_0_0_0_1 MATURE 1 1.23 0 0.00 1 2.00 17G4
......CACCCGTAGAACCGACtTTGC............................................ 14418_0_0_0_0_0_1 MATURE 1 1.23 0 0.00 1 2.00 16T4
......CACCCGTAGAACCGACCTaGCGt.......................................... 12934_0_0_0_0_0_1 MATURE 1 1.23 0 0.00 1 2.00 18A3
......CACCCGTAGAACCGACCaTGCGc.......................................... 39607_1_0_0_0_0_0 MATURE 1 1.23 1 3.23 0 0.00 17A4
......CACCCGTAGAACCGACCTcGCGa.......................................... 9277_0_0_0_0_0_1 MATURE 1 1.23 0 0.00 1 2.00 18C3
......CACCCGTAGAACCGACCTTGa............................................ 24151_0_0_0_0_0_1 MATURE 1 1.23 0 0.00 1 2.00 20
......CACCCGTAGAACCGACCTTGCGc.......................................... 16290_1_0_0_0_0_0 MATURE 1 1.23 1 3.23 0 0.00 22
......CACCCGTAGAACCGACCTTGCGGt......................................... 17529_0_0_0_0_0_1 MATURE 1 1.23 0 0.00 1 2.00 23
......CACCCGTAGAACCGACCTaGCc........................................... 23598_0_0_0_0_0_1 MATURE 1 1.23 0 0.00 1 2.00 18A2
......CACCCGTAGAACCGACaTTGCG........................................... 42530_1_0_0_0_0_0 MATURE 1 1.23 1 3.23 0 0.00 16A5
.....CCACCCGTAGAACCGACCTTG............................................. 14697_0_0_0_0_0_1 MATURE 1 1.23 0 0.00 1 2.00 21
......CACCCGTAGAACCGACCTcGCGt.......................................... 36085_0_0_0_0_0_1 MATURE 1 1.23 0 0.00 1 2.00 18C3
.....CCACCCGTAGAACCGACCTTa............................................. 35653_1_0_0_0_0_0 MATURE 1 1.23 1 3.23 0 0.00 20
......CACCCGTAGAACCGACCTTaCGa.......................................... 27579_0_0_0_0_0_1 MATURE 1 1.23 0 0.00 1 2.00 19A2
......CACCCGTAGAACCGACCTTGCa........................................... 355_1_0_0_0_0_0 MATURE 1 1.23 1 3.23 0 0.00 21
---------- ---------- ----------
81 31 50
(38.27) (61.73)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 31 50 81 100.00%
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31 50 81
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