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REFERENCE HAIRPIN
**************************************************************************************
ID                 : mmu-mir-99a
DESCRIPTION        : mmu-mir-99a MI0000146 Mus musculus miR-99a stem-loop
CHROMOSOME         : 16
SPAN               : 77599181 - 77599245
LENGTH             : 65
SEQUENCE           : CATAAACCCGTAGATCCGATCTTGTGGTGAAGTGGACCGCGCAAGCTCGTTTCTATGGGTCTGTG
OVERHANG THRESHOLD : 40%
**************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-99a
ACCID      : MI0000146
PARENT     : mmu-mir-99a
CHROMOSOME : 16
START      : 77599181
STOP       : 77599245
OFFSET     : 5..26
SEQUENCE   : AACCCGTAGATCCGATCTTGTG
STRAND     : +
******************************



*** MATURE ***
_________________________________________________________________
CATAAACCCGTAGATCCGATCTTGTGGTGAAGTGGACCGCGCAAGCTCGTTTCTATGGGTCTGTG REF                  16                   77599181 - 77599245  
    AACCCGTAGATCCGATCTTGTG                                        MATURE               16                   77599186 - 77599271  mmu-miR-99a          +                    
_________________________________________________________________

                                                             -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......CCCGTAGATCCGATCTTGTG........................................   28847_1_0_0_0_0_2       MATURE            3        25.00            1        20.00            2        28.57                        20   
.....ACCCGTAGATCCGATCTTGTG........................................   11268_0_0_0_0_0_2       MATURE            2        16.67            0         0.00            2        28.57                        21   
......CCCGTAGATCCGATCTTGTa........................................   37778_0_0_0_0_0_2       MATURE            2        16.67            0         0.00            2        28.57                        19   
....AACCCGTAGATCCGATCgTGTGa.......................................   42677_1_0_0_0_0_0       MATURE            1         8.33            1        20.00            0         0.00                      17G4   
....AACCCGTAGATCCGATCTTGTGaTG.....................................   31630_0_0_0_0_0_1       MATURE            1         8.33            0         0.00            1        14.29                      22A2   
....AACCCGTAGATCCGATCTTaTGa.......................................   35185_1_0_0_0_0_0       MATURE            1         8.33            1        20.00            0         0.00                      19A2   
.....ACCCGTAGATCCGATCTTaTG........................................   33007_1_0_0_0_0_0       MATURE            1         8.33            1        20.00            0         0.00                      18A2   
....AACCCGTAGATCCGATCTTGTGa.......................................   21799_1_0_0_0_0_0       MATURE            1         8.33            1        20.00            0         0.00                        22   
                                                                                                      ----------                ----------                ----------   
                                                                                                              12                         5                         7                                          
                                                                                                                                   (41.67)                   (58.33)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               5               7              12         100.00%
                     ----------      ----------      ----------                
                              5               7              12                



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