[BEGIN]

REFERENCE HAIRPIN
***************************************************************************************************************
ID                 : mmu-mir-9-3
DESCRIPTION        : mmu-mir-9-3 MI0000721 Mus musculus miR-9-3 stem-loop
CHROMOSOME         : 7
SPAN               : 86650150 - 86650239
LENGTH             : 90
SEQUENCE           : GGAGGCCCGTTTCTCTCTTTGGTTATCTAGCTGTATGAGTGCCACAGAGCCGTCATAAAGCTAGATAACCGAAAGTAGAAATGACTCTCA
OVERHANG THRESHOLD : 40%
***************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-9
ACCID      : MI0000721
PARENT     : mmu-mir-9-3
CHROMOSOME : 7
START      : 86650150
STOP       : 86650239
OFFSET     : 16..38
SEQUENCE   : TCTTTGGTTATCTAGCTGTATGA
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-9*
ACCID      : MI0000721
PARENT     : mmu-mir-9-3
CHROMOSOME : 7
START      : 86650150
STOP       : 86650239
OFFSET     : 55..76
SEQUENCE   : ATAAAGCTAGATAACCGAAAGT
STRAND     : +
******************************



*** MATURE ***
__________________________________________________________________________________________
GGAGGCCCGTTTCTCTCTTTGGTTATCTAGCTGTATGAGTGCCACAGAGCCGTCATAAAGCTAGATAACCGAAAGTAGAAATGACTCTCA REF                  7                    86650150 - 86650239  
               TCTTTGGTTATCTAGCTGTATGA                                                     MATURE               7                    86650166 - 86650277  mmu-miR-9            +                    
                                                      ATAAAGCTAGATAACCGAAAGT               MATURESTAR           7                    86650205 - 86650315  mmu-miR-9*           +                    
__________________________________________________________________________________________

                                                                                      -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...............TCTTTGGTTATCTAGCTGTAT.......................................................   14294_1_0_0_0_0_2       MATURE            3        50.00            1       100.00            2        40.00                        21   
.................TTTGGTTATCTAGCTGTAT.......................................................   37120_0_0_0_0_0_2       MATURE            2        33.33            0         0.00            2        40.00                        19   
...............TCTTTGGTTATCTAGCTaTATG......................................................    3235_0_0_0_0_0_1       MATURE            1        16.67            0         0.00            1        20.00                      17A4   
                                                                                                                               ----------                ----------                ----------   
                                                                                                                                        6                         1                         5                                          
                                                                                                                                                            (16.67)                   (83.33)                                       




*** MATURESTAR ***
__________________________________________________________________________________________
GGAGGCCCGTTTCTCTCTTTGGTTATCTAGCTGTATGAGTGCCACAGAGCCGTCATAAAGCTAGATAACCGAAAGTAGAAATGACTCTCA REF                  7                    86650150 - 86650239  
               TCTTTGGTTATCTAGCTGTATGA                                                     MATURE               7                    86650166 - 86650277  mmu-miR-9            +                    
                                                      ATAAAGCTAGATAACCGAAAGT               MATURESTAR           7                    86650205 - 86650315  mmu-miR-9*           +                    
__________________________________________________________________________________________

                                                                                      -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
......................................................ATAAAGCTAGATAACCGtAAGT...............   13979_1_0_0_0_0_0   MATURESTAR            1       100.00            1       100.00            0            0                      17T4   
                                                                                                                               ----------                ----------                ----------   
                                                                                                                                        1                         1                         0                                          
                                                                                                                                                           (100.00)                    (0.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               1               5               6          85.71%
     MATURESTAR               1               0               1          14.29%
                     ----------      ----------      ----------                
                              2               5               7                



[END]
