[BEGIN]
REFERENCE HAIRPIN
***************************************************************************************************************
ID : mmu-mir-9-3
DESCRIPTION : mmu-mir-9-3 MI0000721 Mus musculus miR-9-3 stem-loop
CHROMOSOME : 7
SPAN : 86650150 - 86650239
LENGTH : 90
SEQUENCE : GGAGGCCCGTTTCTCTCTTTGGTTATCTAGCTGTATGAGTGCCACAGAGCCGTCATAAAGCTAGATAACCGAAAGTAGAAATGACTCTCA
OVERHANG THRESHOLD : 40%
***************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-9
ACCID : MI0000721
PARENT : mmu-mir-9-3
CHROMOSOME : 7
START : 86650150
STOP : 86650239
OFFSET : 16..38
SEQUENCE : TCTTTGGTTATCTAGCTGTATGA
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-9*
ACCID : MI0000721
PARENT : mmu-mir-9-3
CHROMOSOME : 7
START : 86650150
STOP : 86650239
OFFSET : 55..76
SEQUENCE : ATAAAGCTAGATAACCGAAAGT
STRAND : +
******************************
*** MATURE ***
__________________________________________________________________________________________
GGAGGCCCGTTTCTCTCTTTGGTTATCTAGCTGTATGAGTGCCACAGAGCCGTCATAAAGCTAGATAACCGAAAGTAGAAATGACTCTCA REF 7 86650150 - 86650239
TCTTTGGTTATCTAGCTGTATGA MATURE 7 86650166 - 86650277 mmu-miR-9 +
ATAAAGCTAGATAACCGAAAGT MATURESTAR 7 86650205 - 86650315 mmu-miR-9* +
__________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............TCTTTGGTTATCTAGCTGTAT....................................................... 14294_1_0_0_0_0_2 MATURE 3 50.00 1 100.00 2 40.00 21
.................TTTGGTTATCTAGCTGTAT....................................................... 37120_0_0_0_0_0_2 MATURE 2 33.33 0 0.00 2 40.00 19
...............TCTTTGGTTATCTAGCTaTATG...................................................... 3235_0_0_0_0_0_1 MATURE 1 16.67 0 0.00 1 20.00 17A4
---------- ---------- ----------
6 1 5
(16.67) (83.33)
*** MATURESTAR ***
__________________________________________________________________________________________
GGAGGCCCGTTTCTCTCTTTGGTTATCTAGCTGTATGAGTGCCACAGAGCCGTCATAAAGCTAGATAACCGAAAGTAGAAATGACTCTCA REF 7 86650150 - 86650239
TCTTTGGTTATCTAGCTGTATGA MATURE 7 86650166 - 86650277 mmu-miR-9 +
ATAAAGCTAGATAACCGAAAGT MATURESTAR 7 86650205 - 86650315 mmu-miR-9* +
__________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......................................................ATAAAGCTAGATAACCGtAAGT............... 13979_1_0_0_0_0_0 MATURESTAR 1 100.00 1 100.00 0 0 17T4
---------- ---------- ----------
1 1 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 1 5 6 85.71%
MATURESTAR 1 0 1 14.29%
---------- ---------- ----------
2 5 7
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