[BEGIN]
REFERENCE HAIRPIN
**********************************************************************************************************
ID : mmu-mir-877
DESCRIPTION : mmu-mir-877 MI0005553 Mus musculus miR-877 stem-loop
CHROMOSOME : 17
SPAN : 36097675 - 36097759
LENGTH : 85
SEQUENCE : GTAGAGGAGATGGCGCAGGGGACACAAGGTAGGCCTTGCGGGTCTGTGGACCCTTGGACATGTGTCCTCTTCTCCCTCCTCCCAG
OVERHANG THRESHOLD : 40%
**********************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-877
ACCID : MI0005553
PARENT : mmu-mir-877
CHROMOSOME : 17
START : 36097675
STOP : 36097759
OFFSET : 1..20
SEQUENCE : GTAGAGGAGATGGCGCAGGG
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-877*
ACCID : MI0005553
PARENT : mmu-mir-877
CHROMOSOME : 17
START : 36097675
STOP : 36097759
OFFSET : 63..84
SEQUENCE : TGTCCTCTTCTCCCTCCTCCCA
STRAND : -
******************************
*** MATURE ***
_____________________________________________________________________________________
GTAGAGGAGATGGCGCAGGGGACACAAGGTAGGCCTTGCGGGTCTGTGGACCCTTGGACATGTGTCCTCTTCTCCCTCCTCCCAG REF 17 36097675 - 36097759
GTAGAGGAGATGGCGCAGGG MATURE 17 36097676 - 36097779 mmu-miR-877 -
TGTCCTCTTCTCCCTCCTCCCA MATURESTAR 17 36097738 - 36097843 mmu-miR-877* -
_____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
GTAGAGGAGATGGCGCAGGGGACA.............................................................. 17457_0_0_0_0_0_2 MATURE 2 16.67 0 0.00 2 18.18 24
GTAGAGGAGATGGCGCAGGGaACAa............................................................. 24208_0_0_0_0_0_2 MATURE 2 16.67 0 0.00 2 18.18 20A3
GTAGAGGAGATGGCGCAGGtGACA.............................................................. 5206_0_0_0_0_0_1 MATURE 1 8.33 0 0.00 1 9.09 19T4
GTAGAGGAGATGGCGCAGGcGACAa............................................................. 41822_0_0_0_0_0_1 MATURE 1 8.33 0 0.00 1 9.09 19C4
GTAGAGGAGATGGCGCAGGGG................................................................. 1413_0_0_0_0_0_1 MATURE 1 8.33 0 0.00 1 9.09 21
.TAGAGGAGATGGCGCAGGGGACACt............................................................ 35380_0_0_0_0_0_1 MATURE 1 8.33 0 0.00 1 9.09 24
GTAGAGGAGATGGCGCAGGtGA................................................................ 12399_0_0_0_0_0_1 MATURE 1 8.33 0 0.00 1 9.09 19T2
.TAGAGGAGATGGCGCAGGGa................................................................. 7310_0_0_0_0_0_1 MATURE 1 8.33 0 0.00 1 9.09 19
GTAGAGGAGATGGCGCAGGGaACA.............................................................. 22369_1_0_0_0_0_0 MATURE 1 8.33 1 100.00 0 0.00 20A3
GTAGAGGAGATGGCGCAGGGGAa............................................................... 25964_0_0_0_0_0_1 MATURE 1 8.33 0 0.00 1 9.09 22
---------- ---------- ----------
12 1 11
(8.33) (91.67)
*** MATURESTAR ***
_____________________________________________________________________________________
GTAGAGGAGATGGCGCAGGGGACACAAGGTAGGCCTTGCGGGTCTGTGGACCCTTGGACATGTGTCCTCTTCTCCCTCCTCCCAG REF 17 36097675 - 36097759
GTAGAGGAGATGGCGCAGGG MATURE 17 36097676 - 36097779 mmu-miR-877 -
TGTCCTCTTCTCCCTCCTCCCA MATURESTAR 17 36097738 - 36097843 mmu-miR-877* -
_____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............................................................GTGTCCTCTTCTCCCTCCTCCCAt. 18530_1_0_0_0_0_7 MATURESTAR 8 21.62 1 11.11 7 25.00 23
...............................................................GTCCTCTTCTCCCTCCTCCCAGt 36572_1_0_0_0_0_2 MATURESTAR 3 8.11 1 11.11 2 7.14 22
.............................................................GTGTCCTCTTCTCCCTCCaCCCAa. 22376_0_0_0_0_0_3 MATURESTAR 3 8.11 0 0.00 3 10.71 18A4
..............................................................TGTCCTCTTCTCCCTCCTCCCAGt 22286_2_0_0_0_0_0 MATURESTAR 2 5.41 2 22.22 0 0.00 23
..............................................................TGTCCTCTTCTCCCTCCTCCCAt. 40601_0_0_0_0_0_2 MATURESTAR 2 5.41 0 0.00 2 7.14 22
............................................................TGTGTCCTCTTCTCCCTCCTCCCAt. 32440_0_0_0_0_0_2 MATURESTAR 2 5.41 0 0.00 2 7.14 24
.............................................................GTGTCCTCTTCTCCCTCCTCCaAGt 27210_0_0_0_0_0_2 MATURESTAR 2 5.41 0 0.00 2 7.14 21A2
...............................................................GTCCTCTTCTCCCTCCTCCCAa. 24955_0_0_0_0_0_1 MATURESTAR 1 2.70 0 0.00 1 3.57 21
..............................................................TGTCCTCTTCTCCCTCCTCaCAG. 16463_0_0_0_0_0_1 MATURESTAR 1 2.70 0 0.00 1 3.57 19A3
..............................................................TGTCCTCTTCTCCCTCCTCCCAa. 12023_1_0_0_0_0_0 MATURESTAR 1 2.70 1 11.11 0 0.00 22
...............................................................GTCCTCTTCTCCCTCCTCCCAt. 37284_1_0_0_0_0_0 MATURESTAR 1 2.70 1 11.11 0 0.00 21
.............................................................GTGTCCTCTTCTCCCTCCTCCCAc. 9391_1_0_0_0_0_0 MATURESTAR 1 2.70 1 11.11 0 0.00 23
..............................................................TGTCCTCTTCTCCCTCCTCCCAG. 7984_0_0_0_0_0_1 MATURESTAR 1 2.70 0 0.00 1 3.57 23
............................................................TGTGTCCTCTTCTCCCTCCgCCCAc. 8180_0_0_0_0_0_1 MATURESTAR 1 2.70 0 0.00 1 3.57 19G4
............................................................TGTGTCCTCTTCTCCCTCCaCCCAt. 3192_0_0_0_0_0_1 MATURESTAR 1 2.70 0 0.00 1 3.57 19A4
..............................................................TGTCCTCTTCTCCCTCCTaCCAGt 30770_1_0_0_0_0_0 MATURESTAR 1 2.70 1 11.11 0 0.00 18A4
...........................................................ATGTGTCCTCTTCTCCCTaCTCCC... 24732_0_0_0_0_0_1 MATURESTAR 1 2.70 0 0.00 1 3.57 18A5
.............................................................GTGTCCTCTTCTCCCTCCTCCCAa. 43760_0_0_0_0_0_1 MATURESTAR 1 2.70 0 0.00 1 3.57 23
...............................................................GTCCTCTTCTCCCTCCTaCCAGt 6825_0_0_0_0_0_1 MATURESTAR 1 2.70 0 0.00 1 3.57 17A4
.............................................................GTGTCCTCTTCTCCCTCCTCCCA.. 2078_0_0_0_0_0_1 MATURESTAR 1 2.70 0 0.00 1 3.57 23
..............................................................TGTCCTCTTCTCCCTCCTCtCAGt 36325_0_0_0_0_0_1 MATURESTAR 1 2.70 0 0.00 1 3.57 19T3
...........................................................ATGTGTCCTCTTCTCCCTCCaCCC... 20080_1_0_0_0_0_0 MATURESTAR 1 2.70 1 11.11 0 0.00 20A3
---------- ---------- ----------
37 9 28
(24.32) (75.68)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 1 11 12 24.49%
MATURESTAR 9 28 37 75.51%
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10 39 49
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