[BEGIN]
REFERENCE HAIRPIN
******************************************************************************************************
ID : mmu-mir-872
DESCRIPTION : mmu-mir-872 MI0005549 Mus musculus miR-872 stem-loop
CHROMOSOME : 4
SPAN : 94331848 - 94331928
LENGTH : 81
SEQUENCE : AACTTGTTAGAAGGTTACTTGTTAGTTCAGGACCTCATTACTTTCTGCCTGAACTATTGCAGTAGCCTCCTAACTGGTTAT
OVERHANG THRESHOLD : 40%
******************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-872
ACCID : MI0005549
PARENT : mmu-mir-872
CHROMOSOME : 4
START : 94331848
STOP : 94331928
OFFSET : 11..31
SEQUENCE : AAGGTTACTTGTTAGTTCAGG
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-872*
ACCID : MI0005549
PARENT : mmu-mir-872
CHROMOSOME : 4
START : 94331848
STOP : 94331928
OFFSET : 50..71
SEQUENCE : TGAACTATTGCAGTAGCCTCCT
STRAND : +
******************************
*** MATURE ***
_________________________________________________________________________________
AACTTGTTAGAAGGTTACTTGTTAGTTCAGGACCTCATTACTTTCTGCCTGAACTATTGCAGTAGCCTCCTAACTGGTTAT REF 4 94331848 - 94331928
AAGGTTACTTGTTAGTTCAGG MATURE 4 94331859 - 94331959 mmu-miR-872 +
TGAACTATTGCAGTAGCCTCCT MATURESTAR 4 94331898 - 94331999 mmu-miR-872* +
_________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......TTAGAAGGTTACTTGTTAGTTCAG.................................................... 5379_4_0_0_0_0_17 MATURE 21 24.42 4 13.33 17 30.36 24
.......TAGAAGGTTACTTGTTAGTTCAGGA.................................................. 35292_3_0_0_0_0_2 MATURE 5 5.81 3 10.00 2 3.57 25
......TTAGAAGGTTACTTGTTAGaTCAGG................................................... 1392_1_0_0_0_0_4 MATURE 5 5.81 1 3.33 4 7.14 19A5
......TTAGAAGGTTACTTGTTAGTTCAGG................................................... 25022_2_0_0_0_0_3 MATURE 5 5.81 2 6.67 3 5.36 25
......TTAGAAGGTTACTTGTTAGTaCAGG................................................... 12087_1_0_0_0_0_2 MATURE 3 3.49 1 3.33 2 3.57 20A4
.......TAGAAGGTTACTTGTTAGTaCAGGA.................................................. 26933_1_0_0_0_0_2 MATURE 3 3.49 1 3.33 2 3.57 19A5
.......TAGAAGGTTACTTGTTAGTTCAGGg.................................................. 17013_3_0_0_0_0_0 MATURE 3 3.49 3 10.00 0 0.00 24
........AGAAGGTTACTTGTTAGTTCAGGAa................................................. 30982_2_0_0_0_0_1 MATURE 3 3.49 2 6.67 1 1.79 24
.......TAGAAGGTTACTTGTTAGTcCAGGA.................................................. 8459_0_0_0_0_0_3 MATURE 3 3.49 0 0.00 3 5.36 19C5
.........GAAGGTTACTTGTTAGTTCAaGAa................................................. 40334_1_0_0_0_0_1 MATURE 2 2.33 1 3.33 1 1.79 20A2
......TTAGAAGGTTACTTGTTAGTcCAGG................................................... 4606_1_0_0_0_0_1 MATURE 2 2.33 1 3.33 1 1.79 20C4
.........GAAGGTTACTTGTTAGTTCAGGAt................................................. 27062_1_0_0_0_0_1 MATURE 2 2.33 1 3.33 1 1.79 23
........AGAAGGTTACTTGTTAGTTCtGGAt................................................. 27546_1_0_0_0_0_1 MATURE 2 2.33 1 3.33 1 1.79 20T3
.........GAAGGTTACTTGTTAGTTCAGGAa................................................. 28789_0_0_0_0_0_2 MATURE 2 2.33 0 0.00 2 3.57 23
......TTAGAAGGTTACTTGTTAGTTtAGG................................................... 2740_0_0_0_0_0_2 MATURE 2 2.33 0 0.00 2 3.57 21T3
......TTAGAAGGTTACTTGTTAGTaCAG.................................................... 42818_1_0_0_0_0_0 MATURE 1 1.16 1 3.33 0 0.00 20A3
......TTAGAAGGTTACTTGTTAGcTCAG.................................................... 34120_0_0_0_0_0_1 MATURE 1 1.16 0 0.00 1 1.79 19C4
......TTAGAAGGTTACTTGTTAGTgCAGG................................................... 32994_0_0_0_0_0_1 MATURE 1 1.16 0 0.00 1 1.79 20G4
......TTAGAAGGTTACTTGTTAGTTCA..................................................... 34731_1_0_0_0_0_0 MATURE 1 1.16 1 3.33 0 0.00 23
........AGAAGGTTACTTGTTAGTTCAGGAt................................................. 38631_0_0_0_0_0_1 MATURE 1 1.16 0 0.00 1 1.79 24
......TTAGAAGGTTACTTGTTAGaTCAGt................................................... 43068_0_0_0_0_0_1 MATURE 1 1.16 0 0.00 1 1.79 19A4
.......TAGAAGGTTACTTGTTAGTTCAaGA.................................................. 12459_1_0_0_0_0_0 MATURE 1 1.16 1 3.33 0 0.00 22A2
........AGAAGGTTACTTGTTAGTTaAGGAa................................................. 8965_0_0_0_0_0_1 MATURE 1 1.16 0 0.00 1 1.79 19A4
.......TAGAAGGTTACTTGTTAGTgCAGGA.................................................. 35313_0_0_0_0_0_1 MATURE 1 1.16 0 0.00 1 1.79 19G5
........AGAAGGTTACTTGTTAGTTgAGGAt................................................. 36571_0_0_0_0_0_1 MATURE 1 1.16 0 0.00 1 1.79 19G4
.......TAGAAGGTTACTTGTTAGTTCAGGt.................................................. 21940_1_0_0_0_0_0 MATURE 1 1.16 1 3.33 0 0.00 24
......TTAGAAGGTTACTTGTTAGcTCAGG................................................... 42554_1_0_0_0_0_0 MATURE 1 1.16 1 3.33 0 0.00 19C5
.......TAGAAGGTTACTTGTTAGTTaAGGA.................................................. 40517_1_0_0_0_0_0 MATURE 1 1.16 1 3.33 0 0.00 20A4
.......TAGAAGGTTACTTGTTAGTTaAGGc.................................................. 21501_0_0_0_0_0_1 MATURE 1 1.16 0 0.00 1 1.79 20A3
........AGAAGGTTACTTGTTAGTTtAGGAt................................................. 35305_1_0_0_0_0_0 MATURE 1 1.16 1 3.33 0 0.00 19T4
......TTAGAAGGTTACTTGTTAaTTCAG.................................................... 9033_0_0_0_0_0_1 MATURE 1 1.16 0 0.00 1 1.79 18A5
.......TAGAAGGTTACTTGTTAGTcCAGGc.................................................. 3103_0_0_0_0_0_1 MATURE 1 1.16 0 0.00 1 1.79 19C4
.......TAGAAGGTTACTTGTTAGTgCAGGg.................................................. 2200_0_0_0_0_0_1 MATURE 1 1.16 0 0.00 1 1.79 19G4
......TTAGAAGGTTACTTGTTAGTg....................................................... 27904_1_0_0_0_0_0 MATURE 1 1.16 1 3.33 0 0.00 20
.........GAAGGTTACTTGTTAGTTCAGGAg................................................. 23435_0_0_0_0_0_1 MATURE 1 1.16 0 0.00 1 1.79 23
......TTAGAAGGTTACTTGTTAGaTCAG.................................................... 35809_0_0_0_0_0_1 MATURE 1 1.16 0 0.00 1 1.79 19A4
......TTAGAAGGTTACTTGTTAGTcCAG.................................................... 3042_0_0_0_0_0_1 MATURE 1 1.16 0 0.00 1 1.79 20C3
......TTAGAAGGTTACTTGTTAGTTaAGa................................................... 34810_1_0_0_0_0_0 MATURE 1 1.16 1 3.33 0 0.00 21A2
---------- ---------- ----------
86 30 56
(34.88) (65.12)
*** MATURESTAR ***
_________________________________________________________________________________
AACTTGTTAGAAGGTTACTTGTTAGTTCAGGACCTCATTACTTTCTGCCTGAACTATTGCAGTAGCCTCCTAACTGGTTAT REF 4 94331848 - 94331928
AAGGTTACTTGTTAGTTCAGG MATURE 4 94331859 - 94331959 mmu-miR-872 +
TGAACTATTGCAGTAGCCTCCT MATURESTAR 4 94331898 - 94331999 mmu-miR-872* +
_________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.................................................TGAACTATTGCAGTAGCCTCCT........... 35115_7_0_0_0_0_3 MATURESTAR 10 22.22 7 35.00 3 12.00 22
.................................................TGAACTATTGCAGTAGCCTCCTt.......... 31095_2_0_0_0_0_6 MATURESTAR 8 17.78 2 10.00 6 24.00 22
..............................................GCgTGAACTATTGCAGTAGCCTCCT........... 8518_1_0_0_0_0_3 MATURESTAR 4 8.89 1 5.00 3 12.00 2G22
.................................................TGAACTATTGCAGTAGCCTCCTA.......... 10890_1_0_0_0_0_3 MATURESTAR 4 8.89 1 5.00 3 12.00 23
.................................................TGAACTATTGCAGTAGtCTCCT........... 15714_1_0_0_0_0_1 MATURESTAR 2 4.44 1 5.00 1 4.00 16T5
.................................................TGAACTATTGCAGTAGCCTCCc........... 32006_2_0_0_0_0_0 MATURESTAR 2 4.44 2 10.00 0 0.00 21
..............................................GCgTGAACTATTGCAGTAGCCTCCa........... 40689_1_0_0_0_0_1 MATURESTAR 2 4.44 1 5.00 1 4.00 2G21
.................................................TGAACTATTGCAGTAGCCaCCT........... 10849_0_0_0_0_0_2 MATURESTAR 2 4.44 0 0.00 2 8.00 18A3
.................................................TGAACTATTGCAGTAGCCTCCTAt......... 42904_1_0_0_0_0_1 MATURESTAR 2 4.44 1 5.00 1 4.00 23
................................................CTGAACTATTGCAGTAGCCTCCT........... 27702_1_0_0_0_0_0 MATURESTAR 1 2.22 1 5.00 0 0.00 23
.................................................TGAACTATTGCAGTAGCCTCCaAA......... 19859_0_0_0_0_0_1 MATURESTAR 1 2.22 0 0.00 1 4.00 21A2
.................................................TGAACTATTGCAGTAGCCcCCT........... 10495_0_0_0_0_0_1 MATURESTAR 1 2.22 0 0.00 1 4.00 18C3
....................................................ACTATTGCAGTAGCCTCCT........... 13380_1_0_0_0_0_0 MATURESTAR 1 2.22 1 5.00 0 0.00 19
...............................................CCTGAACTATTGCAGTAGCCaCCTt.......... 8071_1_0_0_0_0_0 MATURESTAR 1 2.22 1 5.00 0 0.00 20A3
.................................................TGAACTATTGCAGTAGCCTa............. 5181_0_0_0_0_0_1 MATURESTAR 1 2.22 0 0.00 1 4.00 19
...................................................AACTATTGCAGTAGCCTCC............ 37230_0_0_0_0_0_1 MATURESTAR 1 2.22 0 0.00 1 4.00 19
...............................................CCTGAACTATTGCAGTAGCCTCCTA.......... 10542_1_0_0_0_0_0 MATURESTAR 1 2.22 1 5.00 0 0.00 25
.................................................TGAACTATTGCAGTAGaCTCCT........... 22410_0_0_0_0_0_1 MATURESTAR 1 2.22 0 0.00 1 4.00 16A5
---------- ---------- ----------
45 20 25
(44.44) (55.56)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 30 56 86 65.65%
MATURESTAR 20 25 45 34.35%
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50 81 131
[END]