[BEGIN]

REFERENCE HAIRPIN
********************************************************************************************************************
ID                 : mmu-mir-805
DESCRIPTION        : mmu-mir-805 MI0005204 Mus musculus miR-805 stem-loop
CHROMOSOME         : MT
SPAN               : 16115 - 16209
LENGTH             : 95
SEQUENCE           : GTCATATTTTGGGAACTACTAGAATTGATCAGGACATAGGGTTTGATAGTTAATATTATATGTCTTTCAAGTTCTTAGTGTTTTTGGGGTTTGGC
OVERHANG THRESHOLD : 40%
********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-805
ACCID      : MI0005204
PARENT     : mmu-mir-805
CHROMOSOME : MT
START      : 16115
STOP       : 16209
OFFSET     : 22..41
SEQUENCE   : GAATTGATCAGGACATAGGG
STRAND     : -
******************************



*** MATURE ***
_______________________________________________________________________________________________
GTCATATTTTGGGAACTACTAGAATTGATCAGGACATAGGGTTTGATAGTTAATATTATATGTCTTTCAAGTTCTTAGTGTTTTTGGGGTTTGGC REF                  MT                   16115 - 16209        
                     GAATTGATCAGGACATAGGG                                                       MATURE               MT                   16137 - 16250        mmu-miR-805          -                    
_______________________________________________________________________________________________

                                                                                           -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.....................GAATTGATCAGGACATAGGGTTTGA..................................................   18599_1_0_0_0_0_3       MATURE            4         5.97            1         5.56            3         6.12                        25   
.....................GAATTGATCAGGACATAGGGa......................................................   24291_2_0_0_0_0_2       MATURE            4         5.97            2        11.11            2         4.08                        20   
.....................GAATTGATCAGGACATAGG........................................................   36196_3_0_0_0_0_1       MATURE            4         5.97            3        16.67            1         2.04                        19   
.....................GAATTGATCAGGACATAGGGT......................................................   17809_1_0_0_0_0_3       MATURE            4         5.97            1         5.56            3         6.12                        21   
........................TTGATCAGGACATAGGGTTTGATAG...............................................   30833_0_0_0_0_0_3       MATURE            3         4.48            0         0.00            3         6.12                        25   
........................TTGATCAGGACATAGGGTTaGATAG...............................................   11649_1_0_0_0_0_2       MATURE            3         4.48            1         5.56            2         4.08                      19A5   
.....................GAATTGATCAGGACATAGGGTT.....................................................   18140_0_0_0_0_0_3       MATURE            3         4.48            0         0.00            3         6.12                        22   
........................TTGATCAGGACATAGGGTTgGATAa...............................................   11373_1_0_0_0_0_2       MATURE            3         4.48            1         5.56            2         4.08                      19G4   
........................TTGATCAGGACATAGGGTTTGATAa...............................................   23338_1_0_0_0_0_2       MATURE            3         4.48            1         5.56            2         4.08                        24   
......................AATTGATCAGGACATAGGGTTTGAc.................................................   25157_1_0_0_0_0_1       MATURE            2         2.99            1         5.56            1         2.04                        24   
.....................GAATTGATCAGGACATAGGG.......................................................    2525_1_0_0_0_0_1       MATURE            2         2.99            1         5.56            1         2.04                        20   
......................AATTGATCAGGACATAGGGTTTGAa.................................................    1808_0_0_0_0_0_2       MATURE            2         2.99            0         0.00            2         4.08                        24   
........................TTGATCAGGACATAGGGTTTtATAG...............................................    4395_0_0_0_0_0_2       MATURE            2         2.99            0         0.00            2         4.08                      20T4   
.....................GAATTGATCAGGACATAGGaTTTGA..................................................   23068_0_0_0_0_0_2       MATURE            2         2.99            0         0.00            2         4.08                      19A5   
......................AATTGATCAGGACATAGGGTTTGAT.................................................   18535_0_0_0_0_0_2       MATURE            2         2.99            0         0.00            2         4.08                        25   
.....................GAATTGATCAGGACATAGGa.......................................................   30427_0_0_0_0_0_2       MATURE            2         2.99            0         0.00            2         4.08                        19   
.....................GAATTGATCAGGACATAGGGTa.....................................................   43724_0_0_0_0_0_2       MATURE            2         2.99            0         0.00            2         4.08                        21   
.....................GAATTGATCAGGACATAGGGcTTGA..................................................   22698_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      20C4   
........................TTGATCAGGACATAGGGTTTGgTAG...............................................   21778_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      21G3   
.....................GAATTGATCAGGAtATAGGGTg.....................................................    6675_1_0_0_0_0_0       MATURE            1         1.49            1         5.56            0         0.00                      13T7   
.........................TGATCAGGACATAGGGTTTGATAGg..............................................    6813_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                        24   
......................AATTGATCAGGACATAGGGTaTGAa.................................................    9854_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      20A3   
.........................TGATCAGGACATAGGGTTTtATAGa..............................................   39360_1_0_0_0_0_0       MATURE            1         1.49            1         5.56            0         0.00                      19T4   
......................AATTGATCAGGACATAGGGaTTGAT.................................................   38802_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      19A5   
.....................GAATTGATCAGGACATAGGGTTa....................................................    1088_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                        22   
.........................TGATCAGGACATAGGGTTTGATAGa..............................................   13790_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                        24   
.......................ATTGATCAGGACATAGGGTTTGATA................................................   10704_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                        25   
.....................GAATTGATCAGGACATAGGGTTTG...................................................    4020_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                        24   
.....................GAATTGATCAGGACATAGGGTaTG...................................................   41802_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      21A2   
.........................TGATCAGGACATAGGGTTTGcTAGa..............................................    2626_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      20C3   
........................TTGATCAGGACATAGGGTTTaATAG...............................................    8555_1_0_0_0_0_0       MATURE            1         1.49            1         5.56            0         0.00                      20A4   
.....................GAATTGATCAGGACATAGGGTTTt...................................................    4998_1_0_0_0_0_0       MATURE            1         1.49            1         5.56            0         0.00                        23   
........................TTGATtAGGACATAGGGTTTGATAG...............................................   36534_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                      5T19   
.....................GAATTGATCAGGACATAGGt.......................................................   27496_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                        19   
.....................GAATTGATCAGGACATAGGGg......................................................   33095_0_0_0_0_0_1       MATURE            1         1.49            0         0.00            1         2.04                        20   
........................TTGATCAGGACATAGGGTTTGATAt...............................................   20070_1_0_0_0_0_0       MATURE            1         1.49            1         5.56            0         0.00                        24   
.....................GAATTGATCAGGACATAGGGTTcGA..................................................   16011_1_0_0_0_0_0       MATURE            1         1.49            1         5.56            0         0.00                      22C2   
                                                                                                                                    ----------                ----------                ----------   
                                                                                                                                            67                        18                        49                                          
                                                                                                                                                                 (26.87)                   (73.13)                                       




*** OTHER ***
_______________________________________________________________________________________________
GTCATATTTTGGGAACTACTAGAATTGATCAGGACATAGGGTTTGATAGTTAATATTATATGTCTTTCAAGTTCTTAGTGTTTTTGGGGTTTGGC REF                  MT                   16115 - 16209        
                     GAATTGATCAGGACATAGGG                                                       MATURE               MT                   16137 - 16250        mmu-miR-805          -                    
_______________________________________________________________________________________________

                                                                                           -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........................ATCAGGACATAGGGTTTGATAGTTA............................................   28542_0_0_0_0_0_4        OTHER            4        12.12            0         0.00            4        18.18                        25   
..........................GATCAGGACATAGGGTTTGgTAGTT.............................................   31175_1_0_0_0_0_2        OTHER            3         9.09            1         9.09            2         9.09                      19G5   
.........................TGATCAGGACATAGGGTTTGATAGT..............................................   20164_2_0_0_0_0_1        OTHER            3         9.09            2        18.18            1         4.55                        25   
..........................GATCAGGACATAGGGTTTGATAGTT.............................................   41400_0_0_0_0_0_2        OTHER            2         6.06            0         0.00            2         9.09                        25   
.............................CAGGACATAGGGTTTGATAGTTAAT..........................................   28882_1_0_0_0_0_1        OTHER            2         6.06            1         9.09            1         4.55                        25   
............................TCAGGACATAGGGTTTGATAGTTAA...........................................   26843_1_0_0_0_0_1        OTHER            2         6.06            1         9.09            1         4.55                        25   
..........................GATCAGGACATAGGGTTTGAcAGTT.............................................   15320_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         4.55                      20C4   
...............................GGACATAGGGTTTGATAGTgAATAa........................................   11243_1_0_0_0_0_0        OTHER            1         3.03            1         9.09            0         0.00                      19G4   
...........................ATCAGGACATAGGGTTTGATAcTTA............................................    3500_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         4.55                      21C3   
...............................GGACATAGGGTTTGATAGTTcATAT........................................   23400_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         4.55                      20C4   
.............................CAGGACATAGGGTTTGATAGTTAAc..........................................    6523_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         4.55                        24   
...............................GGACATAGGGTTTGATAGTcAATAT........................................   10093_1_0_0_0_0_0        OTHER            1         3.03            1         9.09            0         0.00                      19C5   
.........................TGATCAGGACATAGGGTTTGtTAGT..............................................   40054_1_0_0_0_0_0        OTHER            1         3.03            1         9.09            0         0.00                      20T4   
............................TCAGGACATAGGGTTTGATcGTTAA...........................................   19499_1_0_0_0_0_0        OTHER            1         3.03            1         9.09            0         0.00                      19C5   
.................................................................TTCAAGTTCTTAGTGTaTTTGG.........    4161_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         4.55                      16A5   
.........................TGATCAGGACATAGGGTTTGAaAGT..............................................   27261_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         4.55                      21A3   
...........................ATCAGGACATAGGGTTTGATtGTTA............................................   15579_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         4.55                      20T4   
.........................................................ATATGTCTTTCAAGTTCTTAGaGTT..............   23485_1_0_0_0_0_0        OTHER            1         3.03            1         9.09            0         0.00                      21A3   
..........................GATCAGGACATAGGGTTTGAaAGTT.............................................   39810_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         4.55                      20A4   
...............................GGACATAGGGTTTGATAGTTAATAT........................................   30722_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         4.55                        25   
..........................GATCAGGACATAGGGTTTGATAGTa.............................................   32862_1_0_0_0_0_0        OTHER            1         3.03            1         9.09            0         0.00                        24   
...........................ATCAGGACATAGGGTTTGATcGTTA............................................    6259_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         4.55                      20C4   
...........................ATCAGGACATAGGGTTTGAaAGTTA............................................     481_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         4.55                      19A5   
                                                                                                                                    ----------                ----------                ----------   
                                                                                                                                            33                        11                        22                                          
                                                                                                                                                                 (33.33)                   (66.67)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              18              49              67          67.00%
          OTHER              11              22              33          33.00%
                     ----------      ----------      ----------                
                             29              71             100                



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