[BEGIN]
REFERENCE HAIRPIN
********************************************************************************************************************
ID : mmu-mir-805
DESCRIPTION : mmu-mir-805 MI0005204 Mus musculus miR-805 stem-loop
CHROMOSOME : MT
SPAN : 16115 - 16209
LENGTH : 95
SEQUENCE : GTCATATTTTGGGAACTACTAGAATTGATCAGGACATAGGGTTTGATAGTTAATATTATATGTCTTTCAAGTTCTTAGTGTTTTTGGGGTTTGGC
OVERHANG THRESHOLD : 40%
********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-805
ACCID : MI0005204
PARENT : mmu-mir-805
CHROMOSOME : MT
START : 16115
STOP : 16209
OFFSET : 22..41
SEQUENCE : GAATTGATCAGGACATAGGG
STRAND : -
******************************
*** MATURE ***
_______________________________________________________________________________________________
GTCATATTTTGGGAACTACTAGAATTGATCAGGACATAGGGTTTGATAGTTAATATTATATGTCTTTCAAGTTCTTAGTGTTTTTGGGGTTTGGC REF MT 16115 - 16209
GAATTGATCAGGACATAGGG MATURE MT 16137 - 16250 mmu-miR-805 -
_______________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.....................GAATTGATCAGGACATAGGGTTTGA.................................................. 18599_1_0_0_0_0_3 MATURE 4 5.97 1 5.56 3 6.12 25
.....................GAATTGATCAGGACATAGGGa...................................................... 24291_2_0_0_0_0_2 MATURE 4 5.97 2 11.11 2 4.08 20
.....................GAATTGATCAGGACATAGG........................................................ 36196_3_0_0_0_0_1 MATURE 4 5.97 3 16.67 1 2.04 19
.....................GAATTGATCAGGACATAGGGT...................................................... 17809_1_0_0_0_0_3 MATURE 4 5.97 1 5.56 3 6.12 21
........................TTGATCAGGACATAGGGTTTGATAG............................................... 30833_0_0_0_0_0_3 MATURE 3 4.48 0 0.00 3 6.12 25
........................TTGATCAGGACATAGGGTTaGATAG............................................... 11649_1_0_0_0_0_2 MATURE 3 4.48 1 5.56 2 4.08 19A5
.....................GAATTGATCAGGACATAGGGTT..................................................... 18140_0_0_0_0_0_3 MATURE 3 4.48 0 0.00 3 6.12 22
........................TTGATCAGGACATAGGGTTgGATAa............................................... 11373_1_0_0_0_0_2 MATURE 3 4.48 1 5.56 2 4.08 19G4
........................TTGATCAGGACATAGGGTTTGATAa............................................... 23338_1_0_0_0_0_2 MATURE 3 4.48 1 5.56 2 4.08 24
......................AATTGATCAGGACATAGGGTTTGAc................................................. 25157_1_0_0_0_0_1 MATURE 2 2.99 1 5.56 1 2.04 24
.....................GAATTGATCAGGACATAGGG....................................................... 2525_1_0_0_0_0_1 MATURE 2 2.99 1 5.56 1 2.04 20
......................AATTGATCAGGACATAGGGTTTGAa................................................. 1808_0_0_0_0_0_2 MATURE 2 2.99 0 0.00 2 4.08 24
........................TTGATCAGGACATAGGGTTTtATAG............................................... 4395_0_0_0_0_0_2 MATURE 2 2.99 0 0.00 2 4.08 20T4
.....................GAATTGATCAGGACATAGGaTTTGA.................................................. 23068_0_0_0_0_0_2 MATURE 2 2.99 0 0.00 2 4.08 19A5
......................AATTGATCAGGACATAGGGTTTGAT................................................. 18535_0_0_0_0_0_2 MATURE 2 2.99 0 0.00 2 4.08 25
.....................GAATTGATCAGGACATAGGa....................................................... 30427_0_0_0_0_0_2 MATURE 2 2.99 0 0.00 2 4.08 19
.....................GAATTGATCAGGACATAGGGTa..................................................... 43724_0_0_0_0_0_2 MATURE 2 2.99 0 0.00 2 4.08 21
.....................GAATTGATCAGGACATAGGGcTTGA.................................................. 22698_0_0_0_0_0_1 MATURE 1 1.49 0 0.00 1 2.04 20C4
........................TTGATCAGGACATAGGGTTTGgTAG............................................... 21778_0_0_0_0_0_1 MATURE 1 1.49 0 0.00 1 2.04 21G3
.....................GAATTGATCAGGAtATAGGGTg..................................................... 6675_1_0_0_0_0_0 MATURE 1 1.49 1 5.56 0 0.00 13T7
.........................TGATCAGGACATAGGGTTTGATAGg.............................................. 6813_0_0_0_0_0_1 MATURE 1 1.49 0 0.00 1 2.04 24
......................AATTGATCAGGACATAGGGTaTGAa................................................. 9854_0_0_0_0_0_1 MATURE 1 1.49 0 0.00 1 2.04 20A3
.........................TGATCAGGACATAGGGTTTtATAGa.............................................. 39360_1_0_0_0_0_0 MATURE 1 1.49 1 5.56 0 0.00 19T4
......................AATTGATCAGGACATAGGGaTTGAT................................................. 38802_0_0_0_0_0_1 MATURE 1 1.49 0 0.00 1 2.04 19A5
.....................GAATTGATCAGGACATAGGGTTa.................................................... 1088_0_0_0_0_0_1 MATURE 1 1.49 0 0.00 1 2.04 22
.........................TGATCAGGACATAGGGTTTGATAGa.............................................. 13790_0_0_0_0_0_1 MATURE 1 1.49 0 0.00 1 2.04 24
.......................ATTGATCAGGACATAGGGTTTGATA................................................ 10704_0_0_0_0_0_1 MATURE 1 1.49 0 0.00 1 2.04 25
.....................GAATTGATCAGGACATAGGGTTTG................................................... 4020_0_0_0_0_0_1 MATURE 1 1.49 0 0.00 1 2.04 24
.....................GAATTGATCAGGACATAGGGTaTG................................................... 41802_0_0_0_0_0_1 MATURE 1 1.49 0 0.00 1 2.04 21A2
.........................TGATCAGGACATAGGGTTTGcTAGa.............................................. 2626_0_0_0_0_0_1 MATURE 1 1.49 0 0.00 1 2.04 20C3
........................TTGATCAGGACATAGGGTTTaATAG............................................... 8555_1_0_0_0_0_0 MATURE 1 1.49 1 5.56 0 0.00 20A4
.....................GAATTGATCAGGACATAGGGTTTt................................................... 4998_1_0_0_0_0_0 MATURE 1 1.49 1 5.56 0 0.00 23
........................TTGATtAGGACATAGGGTTTGATAG............................................... 36534_0_0_0_0_0_1 MATURE 1 1.49 0 0.00 1 2.04 5T19
.....................GAATTGATCAGGACATAGGt....................................................... 27496_0_0_0_0_0_1 MATURE 1 1.49 0 0.00 1 2.04 19
.....................GAATTGATCAGGACATAGGGg...................................................... 33095_0_0_0_0_0_1 MATURE 1 1.49 0 0.00 1 2.04 20
........................TTGATCAGGACATAGGGTTTGATAt............................................... 20070_1_0_0_0_0_0 MATURE 1 1.49 1 5.56 0 0.00 24
.....................GAATTGATCAGGACATAGGGTTcGA.................................................. 16011_1_0_0_0_0_0 MATURE 1 1.49 1 5.56 0 0.00 22C2
---------- ---------- ----------
67 18 49
(26.87) (73.13)
*** OTHER ***
_______________________________________________________________________________________________
GTCATATTTTGGGAACTACTAGAATTGATCAGGACATAGGGTTTGATAGTTAATATTATATGTCTTTCAAGTTCTTAGTGTTTTTGGGGTTTGGC REF MT 16115 - 16209
GAATTGATCAGGACATAGGG MATURE MT 16137 - 16250 mmu-miR-805 -
_______________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........................ATCAGGACATAGGGTTTGATAGTTA............................................ 28542_0_0_0_0_0_4 OTHER 4 12.12 0 0.00 4 18.18 25
..........................GATCAGGACATAGGGTTTGgTAGTT............................................. 31175_1_0_0_0_0_2 OTHER 3 9.09 1 9.09 2 9.09 19G5
.........................TGATCAGGACATAGGGTTTGATAGT.............................................. 20164_2_0_0_0_0_1 OTHER 3 9.09 2 18.18 1 4.55 25
..........................GATCAGGACATAGGGTTTGATAGTT............................................. 41400_0_0_0_0_0_2 OTHER 2 6.06 0 0.00 2 9.09 25
.............................CAGGACATAGGGTTTGATAGTTAAT.......................................... 28882_1_0_0_0_0_1 OTHER 2 6.06 1 9.09 1 4.55 25
............................TCAGGACATAGGGTTTGATAGTTAA........................................... 26843_1_0_0_0_0_1 OTHER 2 6.06 1 9.09 1 4.55 25
..........................GATCAGGACATAGGGTTTGAcAGTT............................................. 15320_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 4.55 20C4
...............................GGACATAGGGTTTGATAGTgAATAa........................................ 11243_1_0_0_0_0_0 OTHER 1 3.03 1 9.09 0 0.00 19G4
...........................ATCAGGACATAGGGTTTGATAcTTA............................................ 3500_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 4.55 21C3
...............................GGACATAGGGTTTGATAGTTcATAT........................................ 23400_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 4.55 20C4
.............................CAGGACATAGGGTTTGATAGTTAAc.......................................... 6523_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 4.55 24
...............................GGACATAGGGTTTGATAGTcAATAT........................................ 10093_1_0_0_0_0_0 OTHER 1 3.03 1 9.09 0 0.00 19C5
.........................TGATCAGGACATAGGGTTTGtTAGT.............................................. 40054_1_0_0_0_0_0 OTHER 1 3.03 1 9.09 0 0.00 20T4
............................TCAGGACATAGGGTTTGATcGTTAA........................................... 19499_1_0_0_0_0_0 OTHER 1 3.03 1 9.09 0 0.00 19C5
.................................................................TTCAAGTTCTTAGTGTaTTTGG......... 4161_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 4.55 16A5
.........................TGATCAGGACATAGGGTTTGAaAGT.............................................. 27261_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 4.55 21A3
...........................ATCAGGACATAGGGTTTGATtGTTA............................................ 15579_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 4.55 20T4
.........................................................ATATGTCTTTCAAGTTCTTAGaGTT.............. 23485_1_0_0_0_0_0 OTHER 1 3.03 1 9.09 0 0.00 21A3
..........................GATCAGGACATAGGGTTTGAaAGTT............................................. 39810_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 4.55 20A4
...............................GGACATAGGGTTTGATAGTTAATAT........................................ 30722_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 4.55 25
..........................GATCAGGACATAGGGTTTGATAGTa............................................. 32862_1_0_0_0_0_0 OTHER 1 3.03 1 9.09 0 0.00 24
...........................ATCAGGACATAGGGTTTGATcGTTA............................................ 6259_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 4.55 20C4
...........................ATCAGGACATAGGGTTTGAaAGTTA............................................ 481_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 4.55 19A5
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33 11 22
(33.33) (66.67)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 18 49 67 67.00%
OTHER 11 22 33 33.00%
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29 71 100
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