[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************************************************
ID : mmu-mir-7a-1
DESCRIPTION : mmu-mir-7a-1 MI0000728 Mus musculus miR-7a-1 stem-loop
CHROMOSOME : 13
SPAN : 58494140 - 58494247
LENGTH : 108
SEQUENCE : TTGGATGTTGGCCTAGTTCTGTGTGGAAGACTAGTGATTTTGTTGTTTTTAGATAACTAAAACGACAACAAATCACAGTCTGCCATATGGCACAGGCCACCTCTACAG
OVERHANG THRESHOLD : 40%
*********************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-7a
ACCID : MI0000728
PARENT : mmu-mir-7a-1
CHROMOSOME : 13
START : 58494140
STOP : 58494247
OFFSET : 24..46
SEQUENCE : TGGAAGACTAGTGATTTTGTTGT
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-7a*
ACCID : MI0000728
PARENT : mmu-mir-7a-1
CHROMOSOME : 13
START : 58494140
STOP : 58494247
OFFSET : 66..87
SEQUENCE : CAACAAATCACAGTCTGCCATA
STRAND : -
******************************
*** MATURE ***
____________________________________________________________________________________________________________
TTGGATGTTGGCCTAGTTCTGTGTGGAAGACTAGTGATTTTGTTGTTTTTAGATAACTAAAACGACAACAAATCACAGTCTGCCATATGGCACAGGCCACCTCTACAG REF 13 58494140 - 58494247
TGGAAGACTAGTGATTTTGTTGT MATURE 13 58494164 - 58494293 mmu-miR-7a -
CAACAAATCACAGTCTGCCATA MATURESTAR 13 58494206 - 58494334 mmu-miR-7a* -
____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
......................GTGGAAGACTAGTGATTTTGTTGTT.............................................................. 26602_124_0_0_0_0_208 MATURE 332 47.98 124 49.40 208 47.17 25
......................GTGGAAGACTAGTGATTTTGTTaTT.............................................................. 21691_26_0_0_0_0_63 MATURE 89 12.86 26 10.36 63 14.29 22A2
......................GTGGAAGACTAGTGATTTTGTTGT............................................................... 766_10_0_0_0_0_19 MATURE 29 4.19 10 3.98 19 4.31 24
......................GTGGAAGACTAGTGATTTTGaTGTT.............................................................. 8589_11_0_0_0_0_12 MATURE 23 3.32 11 4.38 12 2.72 20A4
......................GTGGAAGACTAGTGATTTTaTTGTT.............................................................. 7350_3_0_0_0_0_15 MATURE 18 2.60 3 1.20 15 3.40 19A5
......................GTGGAAGACTAGTGATTTTGTTGTa.............................................................. 34141_8_0_0_0_0_10 MATURE 18 2.60 8 3.19 10 2.27 24
.....................TGTGGAAGACTAGTGATTTTGTTGT............................................................... 28654_4_0_0_0_0_13 MATURE 17 2.46 4 1.59 13 2.95 25
......................GTGGAAGACTAGTGATTTaGTTGT............................................................... 2771_5_0_0_0_0_11 MATURE 16 2.31 5 1.99 11 2.49 18A5
......................GTGGAAGACTAGTGATTTTGTTGTc.............................................................. 20113_7_0_0_0_0_8 MATURE 15 2.17 7 2.79 8 1.81 24
......................GTGGAAGACTAGTGATTTTGTaGTT.............................................................. 35192_4_0_0_0_0_9 MATURE 13 1.88 4 1.59 9 2.04 21A3
......................GTGGAAGACTAGTGATTTTcTTGTT.............................................................. 1214_5_0_0_0_0_7 MATURE 12 1.73 5 1.99 7 1.59 19C5
......................GTGGAAGACTAGTGATTTTGcTGTT.............................................................. 4572_2_0_0_0_0_10 MATURE 12 1.73 2 0.80 10 2.27 20C4
.......................TGGAAGACTAGTGATTTTGTTGTTT............................................................. 39833_5_0_0_0_0_6 MATURE 11 1.59 5 1.99 6 1.36 25
......................GTGGAAGACTAGTGATTTTGTcGTT.............................................................. 13901_2_0_0_0_0_8 MATURE 10 1.45 2 0.80 8 1.81 21C3
......................GTGGAAGACTAGTGATTTTGTgGTT.............................................................. 14422_1_0_0_0_0_7 MATURE 8 1.16 1 0.40 7 1.59 21G3
.....................TGTGGAAGACTAGTGATTTaGTTGT............................................................... 17180_1_0_0_0_0_4 MATURE 5 0.72 1 0.40 4 0.91 19A5
.......................TGGAAGACTAGTGATTTTGaTGTTT............................................................. 35800_2_0_0_0_0_2 MATURE 4 0.58 2 0.80 2 0.45 19A5
......................GTGGAAGACTAGTGATTTTGTT................................................................. 13284_3_0_0_0_0_1 MATURE 4 0.58 3 1.20 1 0.23 22
......................GTGGAAGACTAGTGATTTTGTTG................................................................ 11182_1_0_0_0_0_2 MATURE 3 0.43 1 0.40 2 0.45 23
......................GTGGAAGACTAGTGATTTTaTTGT............................................................... 15759_3_0_0_0_0_0 MATURE 3 0.43 3 1.20 0 0.00 19A4
.....................TGTGGAAGACTAGTGATTTTGTaGT............................................................... 3383_0_0_0_0_0_3 MATURE 3 0.43 0 0.00 3 0.68 22A2
......................GTGGAAGACTAGTGATTgTGTTG................................................................ 6191_1_0_0_0_0_1 MATURE 2 0.29 1 0.40 1 0.23 17G5
......................GTGGAAGACTAGTGATTTTGcTGTa.............................................................. 19883_2_0_0_0_0_0 MATURE 2 0.29 2 0.80 0 0.00 20C3
......................GTGGAAGACTAGTGATTaTGTTG................................................................ 15682_1_0_0_0_0_1 MATURE 2 0.29 1 0.40 1 0.23 17A5
.....................TGTGGAAGACTAGTGATTTTGgTGT............................................................... 5981_0_0_0_0_0_2 MATURE 2 0.29 0 0.00 2 0.45 21G3
......................GTGGAAGACTAGTGATTTcGTTGT............................................................... 8865_1_0_0_0_0_1 MATURE 2 0.29 1 0.40 1 0.23 18C5
......................GTGGAAGACTAGTGATTTTGgTGTT.............................................................. 12245_0_0_0_0_0_2 MATURE 2 0.29 0 0.00 2 0.45 20G4
.......................TGGAAGACTAGTGATTTTGTgGTTT............................................................. 13166_1_0_0_0_0_1 MATURE 2 0.29 1 0.40 1 0.23 20G4
.......................TGGAAGACTAGTGATTTTGTcGTTT............................................................. 30828_2_0_0_0_0_0 MATURE 2 0.29 2 0.80 0 0.00 20C4
......................GTGGAAGACTAGTGATTTTGTTcTT.............................................................. 18745_2_0_0_0_0_0 MATURE 2 0.29 2 0.80 0 0.00 22C2
......................GTGGAgGACTAGTGATTTTGTTGTT.............................................................. 20651_1_0_0_0_0_1 MATURE 2 0.29 1 0.40 1 0.23 5G19
......................GTGGAAGACTAGTGATTTTGTaGT............................................................... 20088_1_0_0_0_0_1 MATURE 2 0.29 1 0.40 1 0.23 21A2
.....................TGTGGAAGACTAGTGATTTTGTTG................................................................ 35371_0_0_0_0_0_2 MATURE 2 0.29 0 0.00 2 0.45 24
......................GTGGAAGACTAGTGATTTTGaTGT............................................................... 38436_1_0_0_0_0_1 MATURE 2 0.29 1 0.40 1 0.23 20A3
.....................TGTGGAAGACTAGTGATTTTaTTGa............................................................... 34892_1_0_0_0_0_0 MATURE 1 0.14 1 0.40 0 0.00 20A3
......................GTGGAAGACTAGTGATTTcGTTGc............................................................... 23743_1_0_0_0_0_0 MATURE 1 0.14 1 0.40 0 0.00 18C4
......................GTGGAAGACTAGTGATTTaGTTGa............................................................... 7249_1_0_0_0_0_0 MATURE 1 0.14 1 0.40 0 0.00 18A4
......................GTGGAAGACTAGTGATTTTGTg................................................................. 14038_1_0_0_0_0_0 MATURE 1 0.14 1 0.40 0 0.00 21
......................GTGGAAGACTAGTGATTTaGTTG................................................................ 13165_0_0_0_0_0_1 MATURE 1 0.14 0 0.00 1 0.23 18A4
........................GGAAGACTAGTGATTTTGTaGTTTT............................................................ 5787_0_0_0_0_0_1 MATURE 1 0.14 0 0.00 1 0.23 19A5
......................GTGGAAGACTAGTGATTTTcTTGT............................................................... 14461_1_0_0_0_0_0 MATURE 1 0.14 1 0.40 0 0.00 19C4
......................GTGGAAGACTAGTGATTTTGcTGT............................................................... 32503_1_0_0_0_0_0 MATURE 1 0.14 1 0.40 0 0.00 20C3
.....................TGTGGAAGACTAGTGATTTTGaTG................................................................ 5666_1_0_0_0_0_0 MATURE 1 0.14 1 0.40 0 0.00 21A2
........................GGAAGACTAGTGATTTTGTTGTTTa............................................................ 20743_1_0_0_0_0_0 MATURE 1 0.14 1 0.40 0 0.00 24
......................GTGGAAGACTAGTGATTTTGTa................................................................. 34909_1_0_0_0_0_0 MATURE 1 0.14 1 0.40 0 0.00 21
......................GTGGAAGACTAGTGATTTcGTTa................................................................ 7610_0_0_0_0_0_1 MATURE 1 0.14 0 0.00 1 0.23 18C3
.....................TGTGGAAGACTAGTGATTTTGTTGc............................................................... 17481_0_0_0_0_0_1 MATURE 1 0.14 0 0.00 1 0.23 24
......................GTGGAAGACTAGTGATTTTcTTGTa.............................................................. 5535_0_0_0_0_0_1 MATURE 1 0.14 0 0.00 1 0.23 19C4
......................GTGGAAGACTAGTGATTTTGcTGTc.............................................................. 32142_0_0_0_0_0_1 MATURE 1 0.14 0 0.00 1 0.23 20C3
......................GTGGAAGACTAGTGATTTTGTTGa............................................................... 32520_1_0_0_0_0_0 MATURE 1 0.14 1 0.40 0 0.00 23
.....................TGTGGAAGACTAGTGATTTgGTTGT............................................................... 15145_0_0_0_0_0_1 MATURE 1 0.14 0 0.00 1 0.23 19G5
.......................TGGAAGACTAGTGATTTTGcTGTTT............................................................. 36581_0_0_0_0_0_1 MATURE 1 0.14 0 0.00 1 0.23 19C5
......................GTGGAAGACTAGTGATTTTaTTGTc.............................................................. 38918_0_0_0_0_0_1 MATURE 1 0.14 0 0.00 1 0.23 19A4
........................GGAAGACTAGTGATTTTGTTGTTT............................................................. 25572_1_0_0_0_0_0 MATURE 1 0.14 1 0.40 0 0.00 24
.....................TGTGGAAGACTAGTGATTTTGTT................................................................. 19179_0_0_0_0_0_1 MATURE 1 0.14 0 0.00 1 0.23 23
---------- ---------- ----------
692 251 441
(36.27) (63.73)
*** MATURESTAR ***
____________________________________________________________________________________________________________
TTGGATGTTGGCCTAGTTCTGTGTGGAAGACTAGTGATTTTGTTGTTTTTAGATAACTAAAACGACAACAAATCACAGTCTGCCATATGGCACAGGCCACCTCTACAG REF 13 58494140 - 58494247
TGGAAGACTAGTGATTTTGTTGT MATURE 13 58494164 - 58494293 mmu-miR-7a -
CAACAAATCACAGTCTGCCATA MATURESTAR 13 58494206 - 58494334 mmu-miR-7a* -
____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.................................................................CAACAAATCACAGTCTGCCATAT..................... 42405_6_0_0_0_0_4 MATURESTAR 10 20.41 6 26.09 4 15.38 23
.................................................................CAACAAATCACAGTCTGCCATAa..................... 20840_4_0_0_0_0_1 MATURESTAR 5 10.20 4 17.39 1 3.85 22
..................................................................AACAAATCACAGTCTGCCATAT..................... 33078_3_0_0_0_0_2 MATURESTAR 5 10.20 3 13.04 2 7.69 22
.................................................................CAACAAATCACAGTCTGCaATAT..................... 13627_3_0_0_0_0_1 MATURESTAR 4 8.16 3 13.04 1 3.85 18A4
..................................................................AACAAATCACAGTCTGCCATA...................... 40274_0_0_0_0_0_3 MATURESTAR 3 6.12 0 0.00 3 11.54 21
.................................................................CAACAAATCACAGTCTGCCAcAT..................... 20051_0_0_0_0_0_3 MATURESTAR 3 6.12 0 0.00 3 11.54 20C2
...................................................................ACAAATCACAGTCTGtCATAT..................... 40235_1_0_0_0_0_2 MATURESTAR 3 6.12 1 4.35 2 7.69 15T5
...................................................................ACAAATCACAGTCTGCCATAT..................... 33746_1_0_0_0_0_2 MATURESTAR 3 6.12 1 4.35 2 7.69 21
.................................................................CAACAAATCACAGTCTGCCgTAT..................... 7954_0_0_0_0_0_2 MATURESTAR 2 4.08 0 0.00 2 7.69 19G3
.................................................................CAACAAATCACAGTCTGCCAgAT..................... 34524_1_0_0_0_0_0 MATURESTAR 1 2.04 1 4.35 0 0.00 20G2
..................................................................AACAAATCACAGTCTGCCATAa..................... 42624_1_0_0_0_0_0 MATURESTAR 1 2.04 1 4.35 0 0.00 21
..................................................................AACAAATCACAGTCTGCtATAT..................... 14076_0_0_0_0_0_1 MATURESTAR 1 2.04 0 0.00 1 3.85 17T4
.................................................................CAACAAATCACAGTCTGCCATt...................... 37460_0_0_0_0_0_1 MATURESTAR 1 2.04 0 0.00 1 3.85 21
...................................................................ACAAATCACAGTCTGCCATATt.................... 2082_0_0_0_0_0_1 MATURESTAR 1 2.04 0 0.00 1 3.85 21
.................................................................CAACAAATCACAGTCTGaCATAa..................... 23674_1_0_0_0_0_0 MATURESTAR 1 2.04 1 4.35 0 0.00 17A4
.................................................................CAACAAATCACAGTCTGCCATAg..................... 35013_0_0_0_0_0_1 MATURESTAR 1 2.04 0 0.00 1 3.85 22
...............................................................GACAACAAATCACAGTCTGCCAT....................... 43457_0_0_0_0_0_1 MATURESTAR 1 2.04 0 0.00 1 3.85 23
.................................................................CAACAAATCACAGTCTGCtATAa..................... 43042_1_0_0_0_0_0 MATURESTAR 1 2.04 1 4.35 0 0.00 18T3
.................................................................CAACAAATCACAGTCTaCCATt...................... 26299_1_0_0_0_0_0 MATURESTAR 1 2.04 1 4.35 0 0.00 16A4
..................................................................AACAAATCACAGTCTGCtATAa..................... 23985_0_0_0_0_0_1 MATURESTAR 1 2.04 0 0.00 1 3.85 17T3
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49 23 26
(46.94) (53.06)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
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MATURE 251 441 692 93.39%
MATURESTAR 23 26 49 6.61%
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274 467 741
[END]