[BEGIN]

REFERENCE HAIRPIN
*************************************************************************************************************************
ID                 : mmu-mir-744
DESCRIPTION        : mmu-mir-744 MI0004124 Mus musculus mir-744 stem-loop
CHROMOSOME         : 11
SPAN               : 65548235 - 65548334
LENGTH             : 100
SEQUENCE           : GGCTGGGCAAGGTGCGGGGCTAGGGCTAACAGCAGTCTTACTGACGGTTTCCTGGAAACCACACACATGCTGTTGCCACTAACCTCAACCTTACTCGGTC
OVERHANG THRESHOLD : 40%
*************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-744
ACCID      : MI0004124
PARENT     : mmu-mir-744
CHROMOSOME : 11
START      : 65548235
STOP       : 65548334
OFFSET     : 13..34
SEQUENCE   : TGCGGGGCTAGGGCTAACAGCA
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURESTAR
ID         : mmu-miR-744*
ACCID      : MI0004124
PARENT     : mmu-mir-744
CHROMOSOME : 11
START      : 65548235
STOP       : 65548334
OFFSET     : 70..91
SEQUENCE   : CTGTTGCCACTAACCTCAACCT
STRAND     : -
******************************



*** MATURE ***
____________________________________________________________________________________________________
GGCTGGGCAAGGTGCGGGGCTAGGGCTAACAGCAGTCTTACTGACGGTTTCCTGGAAACCACACACATGCTGTTGCCACTAACCTCAACCTTACTCGGTC REF                  11                   65548235 - 65548334  
            TGCGGGGCTAGGGCTAACAGCA                                                                   MATURE               11                   65548248 - 65548368  mmu-miR-744          -                    
                                                                     CTGTTGCCACTAACCTCAACCT          MATURESTAR           11                   65548305 - 65548425  mmu-miR-744*         -                    
____________________________________________________________________________________________________

                                                                                                -SEQ-                -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........GTGCGGGGCTAGGGCTAACAGCAt..................................................................   42199_44_0_0_0_0_37       MATURE           81        16.07           44        18.72           37        13.75                        23   
..........GGTGCGGGGCTAGGGCTAACAaCAt..................................................................   41026_25_0_0_0_0_31       MATURE           56        11.11           25        10.64           31        11.52                      21A2   
...........GTGCGGGGCTAGGGCTAACAaCAt..................................................................   35932_17_0_0_0_0_12       MATURE           29         5.75           17         7.23           12         4.46                      20A2   
...........GTGCGGGGCTAGGGCTAACAGCA...................................................................    43936_8_0_0_0_0_11       MATURE           19         3.77            8         3.40           11         4.09                        23   
...........GTGCGGGGCTAGGGCTAAtAGCAt..................................................................    14164_10_0_0_0_0_8       MATURE           18         3.57           10         4.26            8         2.97                      18T4   
..........GGTGCGGGGCTAGGGCTAACAGCAa..................................................................     33226_8_0_0_0_0_9       MATURE           17         3.37            8         3.40            9         3.35                        24   
..........GGTGCGGGGCTAGGGCTAACAGCAt..................................................................    36127_11_0_0_0_0_6       MATURE           17         3.37           11         4.68            6         2.23                        24   
..........GGTGCGGGGCTAGGGCTAACAaCA...................................................................     21744_7_0_0_0_0_8       MATURE           15         2.98            7         2.98            8         2.97                      21A2   
...........GTGCGGGGCTAGGGCTAACtGCAt..................................................................     28791_6_0_0_0_0_9       MATURE           15         2.98            6         2.55            9         3.35                      19T3   
...........GTGgGGGGCTAGGGCTAACAGCA...................................................................    41090_3_0_0_0_0_12       MATURE           15         2.98            3         1.28           12         4.46                      3G19   
...........GTGCGGGGCTAGGGCTAAgAGCAt..................................................................     42959_7_0_0_0_0_5       MATURE           12         2.38            7         2.98            5         1.86                      18G4   
...........GTGgGGGGCTAGGGCTAACAGCAa..................................................................     13792_5_0_0_0_0_6       MATURE           11         2.18            5         2.13            6         2.23                      3G19   
..........GGTGgGGGGCTAGGGCTAACAGCAa..................................................................     18148_2_0_0_0_0_8       MATURE           10         1.98            2         0.85            8         2.97                      4G19   
..........GGTGgGGGGCTAGGGCTAACAGCA...................................................................     27712_3_0_0_0_0_7       MATURE           10         1.98            3         1.28            7         2.60                      4G19   
...........GTGCGGGGCTAGGGCTAACAGCt...................................................................     24546_5_0_0_0_0_4       MATURE            9         1.79            5         2.13            4         1.49                        22   
...........GTGgGGGGCTAGGGCTAACAGCAt..................................................................     31567_0_0_0_0_0_9       MATURE            9         1.79            0         0.00            9         3.35                      3G19   
...........GTGCGGGGCTAGGGCTAACAcCAt..................................................................     23546_3_0_0_0_0_5       MATURE            8         1.59            3         1.28            5         1.86                      20C2   
...........GTGCGGGGCTAGGGCTAcCAGCA...................................................................     34132_3_0_0_0_0_5       MATURE            8         1.59            3         1.28            5         1.86                      17C5   
...........GTGCGGGGCTAGGGCTAtCAGCA...................................................................     41432_5_0_0_0_0_2       MATURE            7         1.39            5         2.13            2         0.74                      17T5   
...........GTGCGGGGCTAGGGCTAAaAGCAt..................................................................     17801_5_0_0_0_0_2       MATURE            7         1.39            5         2.13            2         0.74                      18A4   
..........GGTGCGGGGCTAGGGCTAcCAGCA...................................................................     32820_4_0_0_0_0_3       MATURE            7         1.39            4         1.70            3         1.12                      18C5   
...........GTGCGGGGCTAGGGCTAACAtCAt..................................................................     36208_1_0_0_0_0_5       MATURE            6         1.19            1         0.43            5         1.86                      20T2   
...........GTGCGGGGCTAGGGCTAgCAGCA...................................................................     30887_3_0_0_0_0_3       MATURE            6         1.19            3         1.28            3         1.12                      17G5   
..........GGTGCGGGGCTAGGGCTAAgAGCAt..................................................................     35288_1_0_0_0_0_4       MATURE            5         0.99            1         0.43            4         1.49                      19G4   
..........GGTGCGGGGCTAGGGCTAACAGCA...................................................................     33754_1_0_0_0_0_4       MATURE            5         0.99            1         0.43            4         1.49                        24   
..........GGTGCGGGGCTAGGGCTAACAaCAa..................................................................     27395_1_0_0_0_0_4       MATURE            5         0.99            1         0.43            4         1.49                      21A2   
...........GTGCGGGGCTAGGGCTAACAGCAa..................................................................     36285_2_0_0_0_0_2       MATURE            4         0.79            2         0.85            2         0.74                        23   
...........GTGCGGGGCTAGGGCTAACAaCA...................................................................      4848_1_0_0_0_0_3       MATURE            4         0.79            1         0.43            3         1.12                      20A2   
..........GGTGCGGGGCTAGGGCTAAaAGCAt..................................................................     14834_1_0_0_0_0_3       MATURE            4         0.79            1         0.43            3         1.12                      19A4   
..........GGTGCGGGGCTAGGGCTAACtGCAt..................................................................     38024_2_0_0_0_0_2       MATURE            4         0.79            2         0.85            2         0.74                      20T3   
...........GTGCGGGGCTAGGGCTAACAGCg...................................................................     18934_1_0_0_0_0_2       MATURE            3         0.60            1         0.43            2         0.74                        22   
..........GGTGCGGGGCTAGGGCTAACcGCAt..................................................................     13677_2_0_0_0_0_1       MATURE            3         0.60            2         0.85            1         0.37                      20C3   
..........GGTGCGGGGCTAGGGCTAACAGCAc..................................................................      1891_3_0_0_0_0_0       MATURE            3         0.60            3         1.28            0         0.00                        24   
...........GTGCGGGGCTAGGGCTAACAGCAc..................................................................     18229_3_0_0_0_0_0       MATURE            3         0.60            3         1.28            0         0.00                        23   
........AAtGTGCGGGGCTAGGGCTAACAG.....................................................................     32173_0_0_0_0_0_3       MATURE            3         0.60            0         0.00            3         1.12                      2T21   
........AAtGTGCGGGGCTAGGGCTAACAGt....................................................................      3992_0_0_0_0_0_2       MATURE            2         0.40            0         0.00            2         0.74                      2T21   
...........GTGCGGGGCTAGGGCTAACAcCA...................................................................     37008_0_0_0_0_0_2       MATURE            2         0.40            0         0.00            2         0.74                      20C2   
...........GTGCGGGGCTAGGGCTAACtGCt...................................................................     40699_1_0_0_0_0_1       MATURE            2         0.40            1         0.43            1         0.37                      19T2   
..........GGTGCGGGGCTAGGGCTAAtAGCA...................................................................     24720_1_0_0_0_0_1       MATURE            2         0.40            1         0.43            1         0.37                      19T4   
..........GGTGCGGGGCTAGGGCTAACAcCA...................................................................     13558_1_0_0_0_0_1       MATURE            2         0.40            1         0.43            1         0.37                      21C2   
...........GTGCGGGGCTAGGGCTAACAGCc...................................................................      5962_1_0_0_0_0_1       MATURE            2         0.40            1         0.43            1         0.37                        22   
..........GGTGgGGGGCTAGGGCTAACAGCAt..................................................................     35366_0_0_0_0_0_2       MATURE            2         0.40            0         0.00            2         0.74                      4G19   
..........GGTGCGGGGCTAGGGCTAACAaCAc..................................................................     37720_2_0_0_0_0_0       MATURE            2         0.40            2         0.85            0         0.00                      21A2   
...........GTGCGGGGCTAGGGCTAAgAGCAa..................................................................     14872_1_0_0_0_0_1       MATURE            2         0.40            1         0.43            1         0.37                      18G4   
...........GTGgGGGGCTAGGGCTAACAGCt...................................................................     22261_2_0_0_0_0_0       MATURE            2         0.40            2         0.85            0         0.00                      3G18   
...........GTGCGGGGCTAGGGCTAAtAGCA...................................................................     17297_2_0_0_0_0_0       MATURE            2         0.40            2         0.85            0         0.00                      18T4   
...........GTGCGGGGCTAGGGCTAACAGCAG..................................................................      1997_1_0_0_0_0_1       MATURE            2         0.40            1         0.43            1         0.37                        24   
...........GTGCGGGGCTAGGGCTAcCAGCt...................................................................      5574_2_0_0_0_0_0       MATURE            2         0.40            2         0.85            0         0.00                      17C4   
..........GGTGCGGGGCTAGGGCTAAtAGCAt..................................................................     35418_2_0_0_0_0_0       MATURE            2         0.40            2         0.85            0         0.00                      19T4   
..........GGTGCGGGGCTAGGGCTAACAGCc...................................................................      6680_2_0_0_0_0_0       MATURE            2         0.40            2         0.85            0         0.00                        23   
...........GTGCGGGGCTAGGGCTAtCAGCg...................................................................      8712_1_0_0_0_0_0       MATURE            1         0.20            1         0.43            0         0.00                      17T4   
...........GTGCGGGGCTAGGGCTAACgGCAGT.................................................................     21970_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      19G5   
...........GTGtGGGGCTAGGGCTAACAGCAt..................................................................     25001_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      3T19   
..........GGTGCGGGGCTAGGGCTAcCAGCt...................................................................      2013_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      18C4   
............TGCGGGGCTAGGGCTAAtAGCAa..................................................................     29865_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      17T4   
...........GTGgGGGGCTAGGGCTAACAGCc...................................................................     44274_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      3G18   
..........GGTGCGGGGCTAGGGCTAAaAGCAa..................................................................     29976_1_0_0_0_0_0       MATURE            1         0.20            1         0.43            0         0.00                      19A4   
...........GTGCGGGGCTAGGGCTAACAcCAa..................................................................     22938_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      20C2   
..........GGTGaGGGGCTAGGGCTAACAGCt...................................................................     20698_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      4A18   
...........GTGCGGGGCTAGGGCTAAaAGCAc..................................................................     15746_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      18A4   
..............CGGGGCTAGGGCTAACAGCA...................................................................     20886_1_0_0_0_0_0       MATURE            1         0.20            1         0.43            0         0.00                        20   
..........GGTGCGGGGCTAGGGCTAACAGCg...................................................................     25399_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                        23   
..........GGTGCGGGGCTAGGGCTAACAcCAa..................................................................     12865_1_0_0_0_0_0       MATURE            1         0.20            1         0.43            0         0.00                      21C2   
...........GTGCGGGGCTAGGGCTAACAcCAc..................................................................     26207_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      20C2   
...........GTGCGGGGCTAGGGCTAACAaCAc..................................................................     32183_1_0_0_0_0_0       MATURE            1         0.20            1         0.43            0         0.00                      20A2   
..........GGTGCGGGGCTAGGGCTAACAtCAa..................................................................     40323_1_0_0_0_0_0       MATURE            1         0.20            1         0.43            0         0.00                      21T2   
...........GTGCGGGGCTAGGGCTAAtAGCAa..................................................................     10288_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      18T4   
..........GGTGCGGGGCTAGGGCTAtCAGCA...................................................................     41154_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      18T5   
..........GGTGCGGGGCTAGGGCTAAgAGCA...................................................................      3972_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      19G4   
...........GTGCGGGGCTAGGGCTAACAtCAc..................................................................     37829_1_0_0_0_0_0       MATURE            1         0.20            1         0.43            0         0.00                      20T2   
...............GGGGCTAGGGCTAACAGCAaTCTTA.............................................................     26008_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      19A5   
........AAtGTGCGGGGCTAGGGCTAACAGC....................................................................     18972_1_0_0_0_0_0       MATURE            1         0.20            1         0.43            0         0.00                      2T22   
..........GGTGCGGGGCTAGGGCTAACAtCAt..................................................................     37881_1_0_0_0_0_0       MATURE            1         0.20            1         0.43            0         0.00                      21T2   
...........GTGCGGGGCTAGGGCTAAgAGCA...................................................................     18732_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      18G4   
...........GTGaGGGGCTAGGGCTAACAGCAa..................................................................     39148_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      3A19   
..........GGTGCGGGGCTAGGGCTAACgGCAt..................................................................     30912_1_0_0_0_0_0       MATURE            1         0.20            1         0.43            0         0.00                      20G3   
..........GGTGgGGGGCTAGGGCTAACAGCg...................................................................      2142_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      4G18   
..........GGTGCGGGGCTAGGGCTAACcGCA...................................................................      9321_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      20C3   
...........GTGCGGGGCTAGGGCTAcCAGCc...................................................................     30365_1_0_0_0_0_0       MATURE            1         0.20            1         0.43            0         0.00                      17C4   
...........GTGCGGGGCTAGGGCTAcCAGC....................................................................     25672_1_0_0_0_0_0       MATURE            1         0.20            1         0.43            0         0.00                      17C4   
............TGgGGGGCTAGGGCTAACAGCAt..................................................................     21186_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      2G19   
............TGaGGGGCTAGGGCTAACAGCA...................................................................     30250_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      2A19   
..........GGTGCGGGGCTAGGGCTAACtGCAa..................................................................     36615_1_0_0_0_0_0       MATURE            1         0.20            1         0.43            0         0.00                      20T3   
..........GGTGCGGGGCTAGGGCTAAtAGCAc..................................................................     25883_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      19T4   
...........GTGCGGGGCTAGGGCTAAtAGCAG..................................................................     43094_0_0_0_0_0_1       MATURE            1         0.20            0         0.00            1         0.37                      18T5   
..........GGTGCGGGGCTAGGGCTAAtAGCAa..................................................................     20299_1_0_0_0_0_0       MATURE            1         0.20            1         0.43            0         0.00                      19T4   
                                                                                                                                           ----------                ----------                ----------   
                                                                                                                                                  504                       235                       269                                          
                                                                                                                                                                        (46.63)                   (53.37)                                       




*** MATURESTAR ***
____________________________________________________________________________________________________
GGCTGGGCAAGGTGCGGGGCTAGGGCTAACAGCAGTCTTACTGACGGTTTCCTGGAAACCACACACATGCTGTTGCCACTAACCTCAACCTTACTCGGTC REF                  11                   65548235 - 65548334  
            TGCGGGGCTAGGGCTAACAGCA                                                                   MATURE               11                   65548248 - 65548368  mmu-miR-744          -                    
                                                                     CTGTTGCCACTAACCTCAACCT          MATURESTAR           11                   65548305 - 65548425  mmu-miR-744*         -                    
____________________________________________________________________________________________________

                                                                                                -SEQ-               -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..................................................................ATGCTGTTGCCACTAACCTCAACCT..........   14525_3_0_0_0_0_10   MATURESTAR           13        54.17            3        60.00           10        52.63                        25   
..................................................................ATGCTGTTGCCACTAACCTCAACCa..........    14696_0_0_0_0_0_2   MATURESTAR            2         8.33            0         0.00            2        10.53                        24   
..................................................................ATGCTGTTGCCACTAACCTCAAt............    38226_0_0_0_0_0_1   MATURESTAR            1         4.17            0         0.00            1         5.26                        22   
..................................................................ATGCTGTTGCCACTAACCTCAACC...........    17817_0_0_0_0_0_1   MATURESTAR            1         4.17            0         0.00            1         5.26                        24   
..................................................................ATGCTGTTGCCACTAACCTCAACCc..........     1397_0_0_0_0_0_1   MATURESTAR            1         4.17            0         0.00            1         5.26                        24   
...................................................................TGCTGTTGCCACTAACCTCAACCTT.........     2804_1_0_0_0_0_0   MATURESTAR            1         4.17            1        20.00            0         0.00                        25   
....................................................................GCTGTTGCCACTAACCTCAACCTTt........    18867_0_0_0_0_0_1   MATURESTAR            1         4.17            0         0.00            1         5.26                        24   
..................................................................ATGCTGTTGCCACTAACCaCAAC............    43615_0_0_0_0_0_1   MATURESTAR            1         4.17            0         0.00            1         5.26                      18A4   
.....................................................................CTGTTGCCACTAACCTCAACCTTt........    42656_1_0_0_0_0_0   MATURESTAR            1         4.17            1        20.00            0         0.00                        23   
..................................................................ATGCTGTTGCCACTAACCTCAAC............    29398_0_0_0_0_0_1   MATURESTAR            1         4.17            0         0.00            1         5.26                        23   
...................................................................TGCTGTTGCCACTAACCTCtACC...........    30659_0_0_0_0_0_1   MATURESTAR            1         4.17            0         0.00            1         5.26                      19T3   
                                                                                                                                          ----------                ----------                ----------   
                                                                                                                                                  24                         5                        19                                          
                                                                                                                                                                       (20.83)                   (79.17)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE             235             269             504          95.45%
     MATURESTAR               5              19              24           4.55%
                     ----------      ----------      ----------                
                            240             288             528                



[END]
