[BEGIN]
REFERENCE HAIRPIN
*************************************************************************************************************************
ID : mmu-mir-744
DESCRIPTION : mmu-mir-744 MI0004124 Mus musculus mir-744 stem-loop
CHROMOSOME : 11
SPAN : 65548235 - 65548334
LENGTH : 100
SEQUENCE : GGCTGGGCAAGGTGCGGGGCTAGGGCTAACAGCAGTCTTACTGACGGTTTCCTGGAAACCACACACATGCTGTTGCCACTAACCTCAACCTTACTCGGTC
OVERHANG THRESHOLD : 40%
*************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-744
ACCID : MI0004124
PARENT : mmu-mir-744
CHROMOSOME : 11
START : 65548235
STOP : 65548334
OFFSET : 13..34
SEQUENCE : TGCGGGGCTAGGGCTAACAGCA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-744*
ACCID : MI0004124
PARENT : mmu-mir-744
CHROMOSOME : 11
START : 65548235
STOP : 65548334
OFFSET : 70..91
SEQUENCE : CTGTTGCCACTAACCTCAACCT
STRAND : -
******************************
*** MATURE ***
____________________________________________________________________________________________________
GGCTGGGCAAGGTGCGGGGCTAGGGCTAACAGCAGTCTTACTGACGGTTTCCTGGAAACCACACACATGCTGTTGCCACTAACCTCAACCTTACTCGGTC REF 11 65548235 - 65548334
TGCGGGGCTAGGGCTAACAGCA MATURE 11 65548248 - 65548368 mmu-miR-744 -
CTGTTGCCACTAACCTCAACCT MATURESTAR 11 65548305 - 65548425 mmu-miR-744* -
____________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........GTGCGGGGCTAGGGCTAACAGCAt.................................................................. 42199_44_0_0_0_0_37 MATURE 81 16.07 44 18.72 37 13.75 23
..........GGTGCGGGGCTAGGGCTAACAaCAt.................................................................. 41026_25_0_0_0_0_31 MATURE 56 11.11 25 10.64 31 11.52 21A2
...........GTGCGGGGCTAGGGCTAACAaCAt.................................................................. 35932_17_0_0_0_0_12 MATURE 29 5.75 17 7.23 12 4.46 20A2
...........GTGCGGGGCTAGGGCTAACAGCA................................................................... 43936_8_0_0_0_0_11 MATURE 19 3.77 8 3.40 11 4.09 23
...........GTGCGGGGCTAGGGCTAAtAGCAt.................................................................. 14164_10_0_0_0_0_8 MATURE 18 3.57 10 4.26 8 2.97 18T4
..........GGTGCGGGGCTAGGGCTAACAGCAa.................................................................. 33226_8_0_0_0_0_9 MATURE 17 3.37 8 3.40 9 3.35 24
..........GGTGCGGGGCTAGGGCTAACAGCAt.................................................................. 36127_11_0_0_0_0_6 MATURE 17 3.37 11 4.68 6 2.23 24
..........GGTGCGGGGCTAGGGCTAACAaCA................................................................... 21744_7_0_0_0_0_8 MATURE 15 2.98 7 2.98 8 2.97 21A2
...........GTGCGGGGCTAGGGCTAACtGCAt.................................................................. 28791_6_0_0_0_0_9 MATURE 15 2.98 6 2.55 9 3.35 19T3
...........GTGgGGGGCTAGGGCTAACAGCA................................................................... 41090_3_0_0_0_0_12 MATURE 15 2.98 3 1.28 12 4.46 3G19
...........GTGCGGGGCTAGGGCTAAgAGCAt.................................................................. 42959_7_0_0_0_0_5 MATURE 12 2.38 7 2.98 5 1.86 18G4
...........GTGgGGGGCTAGGGCTAACAGCAa.................................................................. 13792_5_0_0_0_0_6 MATURE 11 2.18 5 2.13 6 2.23 3G19
..........GGTGgGGGGCTAGGGCTAACAGCAa.................................................................. 18148_2_0_0_0_0_8 MATURE 10 1.98 2 0.85 8 2.97 4G19
..........GGTGgGGGGCTAGGGCTAACAGCA................................................................... 27712_3_0_0_0_0_7 MATURE 10 1.98 3 1.28 7 2.60 4G19
...........GTGCGGGGCTAGGGCTAACAGCt................................................................... 24546_5_0_0_0_0_4 MATURE 9 1.79 5 2.13 4 1.49 22
...........GTGgGGGGCTAGGGCTAACAGCAt.................................................................. 31567_0_0_0_0_0_9 MATURE 9 1.79 0 0.00 9 3.35 3G19
...........GTGCGGGGCTAGGGCTAACAcCAt.................................................................. 23546_3_0_0_0_0_5 MATURE 8 1.59 3 1.28 5 1.86 20C2
...........GTGCGGGGCTAGGGCTAcCAGCA................................................................... 34132_3_0_0_0_0_5 MATURE 8 1.59 3 1.28 5 1.86 17C5
...........GTGCGGGGCTAGGGCTAtCAGCA................................................................... 41432_5_0_0_0_0_2 MATURE 7 1.39 5 2.13 2 0.74 17T5
...........GTGCGGGGCTAGGGCTAAaAGCAt.................................................................. 17801_5_0_0_0_0_2 MATURE 7 1.39 5 2.13 2 0.74 18A4
..........GGTGCGGGGCTAGGGCTAcCAGCA................................................................... 32820_4_0_0_0_0_3 MATURE 7 1.39 4 1.70 3 1.12 18C5
...........GTGCGGGGCTAGGGCTAACAtCAt.................................................................. 36208_1_0_0_0_0_5 MATURE 6 1.19 1 0.43 5 1.86 20T2
...........GTGCGGGGCTAGGGCTAgCAGCA................................................................... 30887_3_0_0_0_0_3 MATURE 6 1.19 3 1.28 3 1.12 17G5
..........GGTGCGGGGCTAGGGCTAAgAGCAt.................................................................. 35288_1_0_0_0_0_4 MATURE 5 0.99 1 0.43 4 1.49 19G4
..........GGTGCGGGGCTAGGGCTAACAGCA................................................................... 33754_1_0_0_0_0_4 MATURE 5 0.99 1 0.43 4 1.49 24
..........GGTGCGGGGCTAGGGCTAACAaCAa.................................................................. 27395_1_0_0_0_0_4 MATURE 5 0.99 1 0.43 4 1.49 21A2
...........GTGCGGGGCTAGGGCTAACAGCAa.................................................................. 36285_2_0_0_0_0_2 MATURE 4 0.79 2 0.85 2 0.74 23
...........GTGCGGGGCTAGGGCTAACAaCA................................................................... 4848_1_0_0_0_0_3 MATURE 4 0.79 1 0.43 3 1.12 20A2
..........GGTGCGGGGCTAGGGCTAAaAGCAt.................................................................. 14834_1_0_0_0_0_3 MATURE 4 0.79 1 0.43 3 1.12 19A4
..........GGTGCGGGGCTAGGGCTAACtGCAt.................................................................. 38024_2_0_0_0_0_2 MATURE 4 0.79 2 0.85 2 0.74 20T3
...........GTGCGGGGCTAGGGCTAACAGCg................................................................... 18934_1_0_0_0_0_2 MATURE 3 0.60 1 0.43 2 0.74 22
..........GGTGCGGGGCTAGGGCTAACcGCAt.................................................................. 13677_2_0_0_0_0_1 MATURE 3 0.60 2 0.85 1 0.37 20C3
..........GGTGCGGGGCTAGGGCTAACAGCAc.................................................................. 1891_3_0_0_0_0_0 MATURE 3 0.60 3 1.28 0 0.00 24
...........GTGCGGGGCTAGGGCTAACAGCAc.................................................................. 18229_3_0_0_0_0_0 MATURE 3 0.60 3 1.28 0 0.00 23
........AAtGTGCGGGGCTAGGGCTAACAG..................................................................... 32173_0_0_0_0_0_3 MATURE 3 0.60 0 0.00 3 1.12 2T21
........AAtGTGCGGGGCTAGGGCTAACAGt.................................................................... 3992_0_0_0_0_0_2 MATURE 2 0.40 0 0.00 2 0.74 2T21
...........GTGCGGGGCTAGGGCTAACAcCA................................................................... 37008_0_0_0_0_0_2 MATURE 2 0.40 0 0.00 2 0.74 20C2
...........GTGCGGGGCTAGGGCTAACtGCt................................................................... 40699_1_0_0_0_0_1 MATURE 2 0.40 1 0.43 1 0.37 19T2
..........GGTGCGGGGCTAGGGCTAAtAGCA................................................................... 24720_1_0_0_0_0_1 MATURE 2 0.40 1 0.43 1 0.37 19T4
..........GGTGCGGGGCTAGGGCTAACAcCA................................................................... 13558_1_0_0_0_0_1 MATURE 2 0.40 1 0.43 1 0.37 21C2
...........GTGCGGGGCTAGGGCTAACAGCc................................................................... 5962_1_0_0_0_0_1 MATURE 2 0.40 1 0.43 1 0.37 22
..........GGTGgGGGGCTAGGGCTAACAGCAt.................................................................. 35366_0_0_0_0_0_2 MATURE 2 0.40 0 0.00 2 0.74 4G19
..........GGTGCGGGGCTAGGGCTAACAaCAc.................................................................. 37720_2_0_0_0_0_0 MATURE 2 0.40 2 0.85 0 0.00 21A2
...........GTGCGGGGCTAGGGCTAAgAGCAa.................................................................. 14872_1_0_0_0_0_1 MATURE 2 0.40 1 0.43 1 0.37 18G4
...........GTGgGGGGCTAGGGCTAACAGCt................................................................... 22261_2_0_0_0_0_0 MATURE 2 0.40 2 0.85 0 0.00 3G18
...........GTGCGGGGCTAGGGCTAAtAGCA................................................................... 17297_2_0_0_0_0_0 MATURE 2 0.40 2 0.85 0 0.00 18T4
...........GTGCGGGGCTAGGGCTAACAGCAG.................................................................. 1997_1_0_0_0_0_1 MATURE 2 0.40 1 0.43 1 0.37 24
...........GTGCGGGGCTAGGGCTAcCAGCt................................................................... 5574_2_0_0_0_0_0 MATURE 2 0.40 2 0.85 0 0.00 17C4
..........GGTGCGGGGCTAGGGCTAAtAGCAt.................................................................. 35418_2_0_0_0_0_0 MATURE 2 0.40 2 0.85 0 0.00 19T4
..........GGTGCGGGGCTAGGGCTAACAGCc................................................................... 6680_2_0_0_0_0_0 MATURE 2 0.40 2 0.85 0 0.00 23
...........GTGCGGGGCTAGGGCTAtCAGCg................................................................... 8712_1_0_0_0_0_0 MATURE 1 0.20 1 0.43 0 0.00 17T4
...........GTGCGGGGCTAGGGCTAACgGCAGT................................................................. 21970_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 19G5
...........GTGtGGGGCTAGGGCTAACAGCAt.................................................................. 25001_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 3T19
..........GGTGCGGGGCTAGGGCTAcCAGCt................................................................... 2013_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 18C4
............TGCGGGGCTAGGGCTAAtAGCAa.................................................................. 29865_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 17T4
...........GTGgGGGGCTAGGGCTAACAGCc................................................................... 44274_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 3G18
..........GGTGCGGGGCTAGGGCTAAaAGCAa.................................................................. 29976_1_0_0_0_0_0 MATURE 1 0.20 1 0.43 0 0.00 19A4
...........GTGCGGGGCTAGGGCTAACAcCAa.................................................................. 22938_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 20C2
..........GGTGaGGGGCTAGGGCTAACAGCt................................................................... 20698_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 4A18
...........GTGCGGGGCTAGGGCTAAaAGCAc.................................................................. 15746_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 18A4
..............CGGGGCTAGGGCTAACAGCA................................................................... 20886_1_0_0_0_0_0 MATURE 1 0.20 1 0.43 0 0.00 20
..........GGTGCGGGGCTAGGGCTAACAGCg................................................................... 25399_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 23
..........GGTGCGGGGCTAGGGCTAACAcCAa.................................................................. 12865_1_0_0_0_0_0 MATURE 1 0.20 1 0.43 0 0.00 21C2
...........GTGCGGGGCTAGGGCTAACAcCAc.................................................................. 26207_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 20C2
...........GTGCGGGGCTAGGGCTAACAaCAc.................................................................. 32183_1_0_0_0_0_0 MATURE 1 0.20 1 0.43 0 0.00 20A2
..........GGTGCGGGGCTAGGGCTAACAtCAa.................................................................. 40323_1_0_0_0_0_0 MATURE 1 0.20 1 0.43 0 0.00 21T2
...........GTGCGGGGCTAGGGCTAAtAGCAa.................................................................. 10288_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 18T4
..........GGTGCGGGGCTAGGGCTAtCAGCA................................................................... 41154_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 18T5
..........GGTGCGGGGCTAGGGCTAAgAGCA................................................................... 3972_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 19G4
...........GTGCGGGGCTAGGGCTAACAtCAc.................................................................. 37829_1_0_0_0_0_0 MATURE 1 0.20 1 0.43 0 0.00 20T2
...............GGGGCTAGGGCTAACAGCAaTCTTA............................................................. 26008_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 19A5
........AAtGTGCGGGGCTAGGGCTAACAGC.................................................................... 18972_1_0_0_0_0_0 MATURE 1 0.20 1 0.43 0 0.00 2T22
..........GGTGCGGGGCTAGGGCTAACAtCAt.................................................................. 37881_1_0_0_0_0_0 MATURE 1 0.20 1 0.43 0 0.00 21T2
...........GTGCGGGGCTAGGGCTAAgAGCA................................................................... 18732_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 18G4
...........GTGaGGGGCTAGGGCTAACAGCAa.................................................................. 39148_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 3A19
..........GGTGCGGGGCTAGGGCTAACgGCAt.................................................................. 30912_1_0_0_0_0_0 MATURE 1 0.20 1 0.43 0 0.00 20G3
..........GGTGgGGGGCTAGGGCTAACAGCg................................................................... 2142_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 4G18
..........GGTGCGGGGCTAGGGCTAACcGCA................................................................... 9321_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 20C3
...........GTGCGGGGCTAGGGCTAcCAGCc................................................................... 30365_1_0_0_0_0_0 MATURE 1 0.20 1 0.43 0 0.00 17C4
...........GTGCGGGGCTAGGGCTAcCAGC.................................................................... 25672_1_0_0_0_0_0 MATURE 1 0.20 1 0.43 0 0.00 17C4
............TGgGGGGCTAGGGCTAACAGCAt.................................................................. 21186_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 2G19
............TGaGGGGCTAGGGCTAACAGCA................................................................... 30250_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 2A19
..........GGTGCGGGGCTAGGGCTAACtGCAa.................................................................. 36615_1_0_0_0_0_0 MATURE 1 0.20 1 0.43 0 0.00 20T3
..........GGTGCGGGGCTAGGGCTAAtAGCAc.................................................................. 25883_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 19T4
...........GTGCGGGGCTAGGGCTAAtAGCAG.................................................................. 43094_0_0_0_0_0_1 MATURE 1 0.20 0 0.00 1 0.37 18T5
..........GGTGCGGGGCTAGGGCTAAtAGCAa.................................................................. 20299_1_0_0_0_0_0 MATURE 1 0.20 1 0.43 0 0.00 19T4
---------- ---------- ----------
504 235 269
(46.63) (53.37)
*** MATURESTAR ***
____________________________________________________________________________________________________
GGCTGGGCAAGGTGCGGGGCTAGGGCTAACAGCAGTCTTACTGACGGTTTCCTGGAAACCACACACATGCTGTTGCCACTAACCTCAACCTTACTCGGTC REF 11 65548235 - 65548334
TGCGGGGCTAGGGCTAACAGCA MATURE 11 65548248 - 65548368 mmu-miR-744 -
CTGTTGCCACTAACCTCAACCT MATURESTAR 11 65548305 - 65548425 mmu-miR-744* -
____________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................................................................ATGCTGTTGCCACTAACCTCAACCT.......... 14525_3_0_0_0_0_10 MATURESTAR 13 54.17 3 60.00 10 52.63 25
..................................................................ATGCTGTTGCCACTAACCTCAACCa.......... 14696_0_0_0_0_0_2 MATURESTAR 2 8.33 0 0.00 2 10.53 24
..................................................................ATGCTGTTGCCACTAACCTCAAt............ 38226_0_0_0_0_0_1 MATURESTAR 1 4.17 0 0.00 1 5.26 22
..................................................................ATGCTGTTGCCACTAACCTCAACC........... 17817_0_0_0_0_0_1 MATURESTAR 1 4.17 0 0.00 1 5.26 24
..................................................................ATGCTGTTGCCACTAACCTCAACCc.......... 1397_0_0_0_0_0_1 MATURESTAR 1 4.17 0 0.00 1 5.26 24
...................................................................TGCTGTTGCCACTAACCTCAACCTT......... 2804_1_0_0_0_0_0 MATURESTAR 1 4.17 1 20.00 0 0.00 25
....................................................................GCTGTTGCCACTAACCTCAACCTTt........ 18867_0_0_0_0_0_1 MATURESTAR 1 4.17 0 0.00 1 5.26 24
..................................................................ATGCTGTTGCCACTAACCaCAAC............ 43615_0_0_0_0_0_1 MATURESTAR 1 4.17 0 0.00 1 5.26 18A4
.....................................................................CTGTTGCCACTAACCTCAACCTTt........ 42656_1_0_0_0_0_0 MATURESTAR 1 4.17 1 20.00 0 0.00 23
..................................................................ATGCTGTTGCCACTAACCTCAAC............ 29398_0_0_0_0_0_1 MATURESTAR 1 4.17 0 0.00 1 5.26 23
...................................................................TGCTGTTGCCACTAACCTCtACC........... 30659_0_0_0_0_0_1 MATURESTAR 1 4.17 0 0.00 1 5.26 19T3
---------- ---------- ----------
24 5 19
(20.83) (79.17)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 235 269 504 95.45%
MATURESTAR 5 19 24 4.55%
---------- ---------- ----------
240 288 528
[END]