[BEGIN]

REFERENCE HAIRPIN
*************************************************************************************************************
ID                 : mmu-mir-709
DESCRIPTION        : mmu-mir-709 MI0004693 Mus musculus miR-709 stem-loop
CHROMOSOME         : 8
SPAN               : 86609998 - 86610085
LENGTH             : 88
SEQUENCE           : TGTCCCGTTTCTCTGCTTCTACTCAGAAGTGCTCTGAGCATAGAACTGTCCTGTTTGAGCAGCACTGGGGAGGCAGAGGCAGGAGGAT
OVERHANG THRESHOLD : 40%
*************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-709
ACCID      : MI0004693
PARENT     : mmu-mir-709
CHROMOSOME : 8
START      : 86609998
STOP       : 86610085
OFFSET     : 69..87
SEQUENCE   : GGAGGCAGAGGCAGGAGGA
STRAND     : +
******************************



*** MATURE ***
________________________________________________________________________________________
TGTCCCGTTTCTCTGCTTCTACTCAGAAGTGCTCTGAGCATAGAACTGTCCTGTTTGAGCAGCACTGGGGAGGCAGAGGCAGGAGGAT REF                  8                    86609998 - 86610085  
                                                                    GGAGGCAGAGGCAGGAGGA  MATURE               8                    86610067 - 86610172  mmu-miR-709          +                    
________________________________________________________________________________________

                                                                                    -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..................................................................GGGGAGGCAGAGGCAGGAGGA..   36307_1_0_0_0_0_7       MATURE            8        42.11            1        25.00            7        46.67                        21   
..................................................................GGGGAGGCAGAGGCAGGAGG...   44300_1_0_0_0_0_2       MATURE            3        15.79            1        25.00            2        13.33                        20   
....................................................................GGAGGCAGAGGCAGGAGGA..   37129_0_0_0_0_0_2       MATURE            2        10.53            0         0.00            2        13.33                        19   
..................................................................GGGGAGGCAGAGGCAGGAGGt..   33737_1_0_0_0_0_1       MATURE            2        10.53            1        25.00            1         6.67                        20   
...................................................................GGGAGGCAGAGGCAGGAGGAT.   37968_0_0_0_0_0_1       MATURE            1         5.26            0         0.00            1         6.67                        21   
..................................................................GGGGAGGCAGAGGCAGGAGt...    2524_0_0_0_0_0_1       MATURE            1         5.26            0         0.00            1         6.67                        19   
..................................................................GGGGAGGCAGAGGCAGGAG....    5918_1_0_0_0_0_0       MATURE            1         5.26            1        25.00            0         0.00                        19   
..................................................................GGGGAGGCAGAGGCAGGAGGAT.    8083_0_0_0_0_0_1       MATURE            1         5.26            0         0.00            1         6.67                        22   
                                                                                                                             ----------                ----------                ----------   
                                                                                                                                     19                         4                        15                                          
                                                                                                                                                          (21.05)                   (78.95)                                       




*** OTHER ***
________________________________________________________________________________________
TGTCCCGTTTCTCTGCTTCTACTCAGAAGTGCTCTGAGCATAGAACTGTCCTGTTTGAGCAGCACTGGGGAGGCAGAGGCAGGAGGAT REF                  8                    86609998 - 86610085  
                                                                    GGAGGCAGAGGCAGGAGGA  MATURE               8                    86610067 - 86610172  mmu-miR-709          +                    
________________________________________________________________________________________

                                                                                    -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
............................................................AGCACTGGGGAGGCAGAGG..........   34400_0_0_0_0_0_2        OTHER            2       100.00            0            0            2       100.00                        19   
                                                                                                                             ----------                ----------                ----------   
                                                                                                                                      2                         0                         2                                          
                                                                                                                                                           (0.00)                  (100.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               4              15              19          90.48%
          OTHER               0               2               2           9.52%
                     ----------      ----------      ----------                
                              4              17              21                



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