[BEGIN]
REFERENCE HAIRPIN
****************************************************************************************************
ID : mmu-mir-700
DESCRIPTION : mmu-mir-700 MI0004684 Mus musculus miR-700 stem-loop
CHROMOSOME : 4
SPAN : 134972470 - 134972548
LENGTH : 79
SEQUENCE : TTCACTGGGAGTAAGGCTCCTTCCTGTGCTTGCAGGGGAGAAATACGAACTGCACGCGGGAACCGAGTCCACCCCCAGT
OVERHANG THRESHOLD : 40%
****************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-700
ACCID : MI0004684
PARENT : mmu-mir-700
CHROMOSOME : 4
START : 134972470
STOP : 134972548
OFFSET : 53..73
SEQUENCE : CACGCGGGAACCGAGTCCACC
STRAND : -
******************************
*** MATURE ***
_______________________________________________________________________________
TTCACTGGGAGTAAGGCTCCTTCCTGTGCTTGCAGGGGAGAAATACGAACTGCACGCGGGAACCGAGTCCACCCCCAGT REF 4 134972470 - 134972548
CACGCGGGAACCGAGTCCACC MATURE 4 134972523 - 134972621 mmu-miR-700 -
_______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...................................................GCACGCGGGAACCGAGTCCACt....... 39280_1_0_0_0_0_0 MATURE 1 20.00 1 25.00 0 0.00 21
...................................................GCACGCGGGAACCGAGTgCACt....... 20473_1_0_0_0_0_0 MATURE 1 20.00 1 25.00 0 0.00 17G3
...................................................GCACGCGGGAACCGAaTCCAC........ 34343_1_0_0_0_0_0 MATURE 1 20.00 1 25.00 0 0.00 15A5
...................................................GCACGCGGGAACCGAGTCCACC....... 22162_1_0_0_0_0_0 MATURE 1 20.00 1 25.00 0 0.00 22
...................................................GCACGCGGGAACCGAGTCCACg....... 36369_0_0_0_0_0_1 MATURE 1 20.00 0 0.00 1 100.00 21
---------- ---------- ----------
5 4 1
(80.00) (20.00)
*** OTHER ***
_______________________________________________________________________________
TTCACTGGGAGTAAGGCTCCTTCCTGTGCTTGCAGGGGAGAAATACGAACTGCACGCGGGAACCGAGTCCACCCCCAGT REF 4 134972470 - 134972548
CACGCGGGAACCGAGTCCACC MATURE 4 134972523 - 134972621 mmu-miR-700 -
_______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..........GTAAGGCTCCTTCCTGTGCTTGCA.............................................. 13711_1_0_0_0_0_4 OTHER 5 21.74 1 14.29 4 25.00 24
..........GTAAGGCTCCTTCCTGTGCTTGC............................................... 43754_0_0_0_0_0_4 OTHER 4 17.39 0 0.00 4 25.00 23
..........GTAAGGCTCCTTCCTGTGCTTGCAt............................................. 14268_0_0_0_0_0_3 OTHER 3 13.04 0 0.00 3 18.75 24
..........GTAAGGCTCCTTCCTGTaCTTGC............................................... 31717_1_0_0_0_0_2 OTHER 3 13.04 1 14.29 2 12.50 17A5
..........GTAAGGCTCCTTCCTGTcCTTGC............................................... 12082_1_0_0_0_0_1 OTHER 2 8.70 1 14.29 1 6.25 17C5
............AAGGCTCCTTCCTGTGCTTGCAGt............................................ 43656_0_0_0_0_0_1 OTHER 1 4.35 0 0.00 1 6.25 23
.........AGTAAGGCTCCTTCCTGTGCcTGt............................................... 21278_0_0_0_0_0_1 OTHER 1 4.35 0 0.00 1 6.25 20C2
..........GTAAGGCTCCTTCCTGTaCTTGa............................................... 39685_1_0_0_0_0_0 OTHER 1 4.35 1 14.29 0 0.00 17A4
..........GTgAGGCTCCTTCCTGTGCTTGCAt............................................. 4466_1_0_0_0_0_0 OTHER 1 4.35 1 14.29 0 0.00 2G21
............AAGGCTCCTTCCTGTaCTTGC............................................... 33088_1_0_0_0_0_0 OTHER 1 4.35 1 14.29 0 0.00 15A5
..........GTAAGGCTCCTTCCTGTcCTTGt............................................... 33129_1_0_0_0_0_0 OTHER 1 4.35 1 14.29 0 0.00 17C4
---------- ---------- ----------
23 7 16
(30.43) (69.57)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 4 1 5 17.86%
OTHER 7 16 23 82.14%
---------- ---------- ----------
11 17 28
[END]