[BEGIN]

REFERENCE HAIRPIN
**********************************************************************************************************************************
ID                 : mmu-mir-685
DESCRIPTION        : mmu-mir-685 MI0004649 Mus musculus miR-685 stem-loop
CHROMOSOME         : 14
SPAN               : 51427159 - 51427267
LENGTH             : 109
SEQUENCE           : GTCGGGGCGGATGCCTCCCTCGCCGGAGCGGATGCCTCCCTCGCCGGAGCTTGGAACAGACTCACGGCCAGCAGTGCGAGTTCAATGGCTGAGGTGAGGCACCTCCCGG
OVERHANG THRESHOLD : 40%
**********************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-685
ACCID      : MI0004649
PARENT     : mmu-mir-685
CHROMOSOME : 14
START      : 51427159
STOP       : 51427267
OFFSET     : 82..102
SEQUENCE   : TCAATGGCTGAGGTGAGGCAC
STRAND     : -
******************************



*** MATURE ***
_____________________________________________________________________________________________________________
GTCGGGGCGGATGCCTCCCTCGCCGGAGCGGATGCCTCCCTCGCCGGAGCTTGGAACAGACTCACGGCCAGCAGTGCGAGTTCAATGGCTGAGGTGAGGCACCTCCCGG REF                  14                   51427159 - 51427267  
                                                                                 TCAATGGCTGAGGTGAGGCAC        MATURE               14                   51427241 - 51427369  mmu-miR-685          -                    
_____________________________________________________________________________________________________________

                                                                                                         -SEQ-               -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...............................................................................GTTCAATGGCTGAGGTGAGaCACCT......   13603_0_0_0_0_0_13       MATURE           13        32.50            0            0           13        32.50                      19A5   
...............................................................................GTTCAATGGCTGAGGTGAGGCACCT......    7384_0_0_0_0_0_12       MATURE           12        30.00            0            0           12        30.00                        25   
................................................................................TTCAATGGCTGAGGTGAGGCACCTC.....    44021_0_0_0_0_0_3       MATURE            3         7.50            0            0            3         7.50                        25   
...............................................................................GTTCAATGGCTGAGGTGAGtCACCT......    15665_0_0_0_0_0_3       MATURE            3         7.50            0            0            3         7.50                      19T5   
...............................................................................GTTCAATGGCTGAGGTGAGGC..........    34570_0_0_0_0_0_1       MATURE            1         2.50            0            0            1         2.50                        21   
................................................................................TTCAATGGCTGAGGTGAGGaACCTC.....    32786_0_0_0_0_0_1       MATURE            1         2.50            0            0            1         2.50                      19A5   
..................................................................................CAATGGCTGAGGTGAGGCAtCTC.....    23269_0_0_0_0_0_1       MATURE            1         2.50            0            0            1         2.50                      19T3   
...............................................................................GTTCAATGGCTGAGGTGAGGtACCT......    22006_0_0_0_0_0_1       MATURE            1         2.50            0            0            1         2.50                      20T4   
...............................................................................GTTCAATGGCTGAGGTGAG............    42866_0_0_0_0_0_1       MATURE            1         2.50            0            0            1         2.50                        19   
.................................................................................TCAATGGCTGAGGTGAGGCACCTCa....     6414_0_0_0_0_0_1       MATURE            1         2.50            0            0            1         2.50                        24   
.................................................................................TCAATGGCTGAGGTGAGGCACCcCC....    27621_0_0_0_0_0_1       MATURE            1         2.50            0            0            1         2.50                      22C2   
.................................................................................TCAATGGCTGAGGTGAGGtACCTC.....    28380_0_0_0_0_0_1       MATURE            1         2.50            0            0            1         2.50                      18T5   
................................................................................TTCAATGGCTGAGGTGAGGCAtCTC.....    35691_0_0_0_0_0_1       MATURE            1         2.50            0            0            1         2.50                      21T3   
                                                                                                                                                   ----------                ----------                ----------   
                                                                                                                                                           40                         0                        40                                          
                                                                                                                                                                                 (0.00)                  (100.00)                                       




*** OTHER ***
_____________________________________________________________________________________________________________
GTCGGGGCGGATGCCTCCCTCGCCGGAGCGGATGCCTCCCTCGCCGGAGCTTGGAACAGACTCACGGCCAGCAGTGCGAGTTCAATGGCTGAGGTGAGGCACCTCCCGG REF                  14                   51427159 - 51427267  
                                                                                 TCAATGGCTGAGGTGAGGCAC        MATURE               14                   51427241 - 51427369  mmu-miR-685          -                    
_____________________________________________________________________________________________________________

                                                                                                         -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.........................GAGCGGATGCCTCCCTCGCtGGAGC............................................................   23489_0_0_0_0_0_1        OTHER            1       100.00            0            0            1       100.00                      19T5   
                                                                                                                                                  ----------                ----------                ----------   
                                                                                                                                                           1                         0                         1                                          
                                                                                                                                                                                (0.00)                  (100.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               0              40              40          97.56%
          OTHER               0               1               1           2.44%
                     ----------      ----------      ----------                
                              0              41              41                



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