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REFERENCE HAIRPIN
**********************************************************************************************************************************
ID                 : mmu-mir-677
DESCRIPTION        : mmu-mir-677 MI0004634 Mus musculus miR-677 stem-loop
CHROMOSOME         : 10
SPAN               : 127522342 - 127522450
LENGTH             : 109
SEQUENCE           : GAGCCTTCAGTGATGATTAGCTTCTGACTTTCGTTCTTCTGAATTTGCTGAAGCCAGATGCCGTTCCTGAGAAGGGGAAAATGGACAGAACTGAACATTTTTGAAGGCT
OVERHANG THRESHOLD : 40%
**********************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-677
ACCID      : MI0004634
PARENT     : mmu-mir-677
CHROMOSOME : 10
START      : 127522342
STOP       : 127522450
OFFSET     : 6..27
SEQUENCE   : TTCAGTGATGATTAGCTTCTGA
STRAND     : +
******************************



*** MATURE ***
_____________________________________________________________________________________________________________
GAGCCTTCAGTGATGATTAGCTTCTGACTTTCGTTCTTCTGAATTTGCTGAAGCCAGATGCCGTTCCTGAGAAGGGGAAAATGGACAGAACTGAACATTTTTGAAGGCT REF                  10                   127522342 - 127522450 
     TTCAGTGATGATTAGCTTCTGA                                                                                   MATURE               10                   127522348 - 127522477 mmu-miR-677          +                    
_____________________________________________________________________________________________________________

                                                                                                         -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..GCCTTCAGTGATGATTAGCTT.......................................................................................   25182_0_0_0_0_0_1       MATURE            1        50.00            0            0            1        50.00                        21   
.....TTCAGTGATGATTAGCTTCTGACTT................................................................................    1926_0_0_0_0_0_1       MATURE            1        50.00            0            0            1        50.00                        25   
                                                                                                                                                  ----------                ----------                ----------   
                                                                                                                                                           2                         0                         2                                          
                                                                                                                                                                                (0.00)                  (100.00)                                       




*** OTHER ***
_____________________________________________________________________________________________________________
GAGCCTTCAGTGATGATTAGCTTCTGACTTTCGTTCTTCTGAATTTGCTGAAGCCAGATGCCGTTCCTGAGAAGGGGAAAATGGACAGAACTGAACATTTTTGAAGGCT REF                  10                   127522342 - 127522450 
     TTCAGTGATGATTAGCTTCTGA                                                                                   MATURE               10                   127522348 - 127522477 mmu-miR-677          +                    
_____________________________________________________________________________________________________________

                                                                                                         -SEQ-                 -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
................................................TGAAGCCAGATGCCGTTCCcGAGAg.....................................       2383_1_0_0_0_0_0        OTHER            1        12.50            1        20.00            0         0.00                      19C4   
................TTAGCTTCTGACTTTCGTTCTTCTG.....................................................................      38900_1_0_0_0_0_0        OTHER            1        12.50            1        20.00            0         0.00                        25   
...................................................AGCCAGATGCCGTTCCTGAG.......................................      22202_0_0_0_0_0_1        OTHER            1        12.50            0         0.00            1        33.33                        20   
...............ATTAGCTTCTGACTTTCGTTCTgCT......................................................................       4858_1_0_0_0_0_0        OTHER            1        12.50            1        20.00            0         0.00                      22G2   
.............TGATTAGCTTCTGACTTTCGTTCTT........................................................................       7304_0_0_0_0_0_1        OTHER            1        12.50            0         0.00            1        33.33                        25   
..................................................AAGCCAGATGCCGTTCCTGAGAAGG...................................      43878_1_0_0_0_0_0        OTHER            1        12.50            1        20.00            0         0.00                        25   
..............................................GCTGAAGCCAGATGCCGTTCCTGAa.......................................      35416_0_0_0_0_0_1        OTHER            1        12.50            0         0.00            1        33.33                        24   
..................................................AAGCCAGATGCCGTTCCTGgGAAGa...................................      26330_1_0_0_0_0_0        OTHER            1        12.50            1        20.00            0         0.00                      19G4   
                                                                                                                                                     ----------                ----------                ----------   
                                                                                                                                                              8                         5                         3                                          
                                                                                                                                                                                  (62.50)                   (37.50)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               0               2               2          20.00%
          OTHER               5               3               8          80.00%
                     ----------      ----------      ----------                
                              5               5              10                



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