[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-677
DESCRIPTION : mmu-mir-677 MI0004634 Mus musculus miR-677 stem-loop
CHROMOSOME : 10
SPAN : 127522342 - 127522450
LENGTH : 109
SEQUENCE : GAGCCTTCAGTGATGATTAGCTTCTGACTTTCGTTCTTCTGAATTTGCTGAAGCCAGATGCCGTTCCTGAGAAGGGGAAAATGGACAGAACTGAACATTTTTGAAGGCT
OVERHANG THRESHOLD : 40%
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TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-677
ACCID : MI0004634
PARENT : mmu-mir-677
CHROMOSOME : 10
START : 127522342
STOP : 127522450
OFFSET : 6..27
SEQUENCE : TTCAGTGATGATTAGCTTCTGA
STRAND : +
******************************
*** MATURE ***
_____________________________________________________________________________________________________________
GAGCCTTCAGTGATGATTAGCTTCTGACTTTCGTTCTTCTGAATTTGCTGAAGCCAGATGCCGTTCCTGAGAAGGGGAAAATGGACAGAACTGAACATTTTTGAAGGCT REF 10 127522342 - 127522450
TTCAGTGATGATTAGCTTCTGA MATURE 10 127522348 - 127522477 mmu-miR-677 +
_____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..GCCTTCAGTGATGATTAGCTT....................................................................................... 25182_0_0_0_0_0_1 MATURE 1 50.00 0 0 1 50.00 21
.....TTCAGTGATGATTAGCTTCTGACTT................................................................................ 1926_0_0_0_0_0_1 MATURE 1 50.00 0 0 1 50.00 25
---------- ---------- ----------
2 0 2
(0.00) (100.00)
*** OTHER ***
_____________________________________________________________________________________________________________
GAGCCTTCAGTGATGATTAGCTTCTGACTTTCGTTCTTCTGAATTTGCTGAAGCCAGATGCCGTTCCTGAGAAGGGGAAAATGGACAGAACTGAACATTTTTGAAGGCT REF 10 127522342 - 127522450
TTCAGTGATGATTAGCTTCTGA MATURE 10 127522348 - 127522477 mmu-miR-677 +
_____________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
................................................TGAAGCCAGATGCCGTTCCcGAGAg..................................... 2383_1_0_0_0_0_0 OTHER 1 12.50 1 20.00 0 0.00 19C4
................TTAGCTTCTGACTTTCGTTCTTCTG..................................................................... 38900_1_0_0_0_0_0 OTHER 1 12.50 1 20.00 0 0.00 25
...................................................AGCCAGATGCCGTTCCTGAG....................................... 22202_0_0_0_0_0_1 OTHER 1 12.50 0 0.00 1 33.33 20
...............ATTAGCTTCTGACTTTCGTTCTgCT...................................................................... 4858_1_0_0_0_0_0 OTHER 1 12.50 1 20.00 0 0.00 22G2
.............TGATTAGCTTCTGACTTTCGTTCTT........................................................................ 7304_0_0_0_0_0_1 OTHER 1 12.50 0 0.00 1 33.33 25
..................................................AAGCCAGATGCCGTTCCTGAGAAGG................................... 43878_1_0_0_0_0_0 OTHER 1 12.50 1 20.00 0 0.00 25
..............................................GCTGAAGCCAGATGCCGTTCCTGAa....................................... 35416_0_0_0_0_0_1 OTHER 1 12.50 0 0.00 1 33.33 24
..................................................AAGCCAGATGCCGTTCCTGgGAAGa................................... 26330_1_0_0_0_0_0 OTHER 1 12.50 1 20.00 0 0.00 19G4
---------- ---------- ----------
8 5 3
(62.50) (37.50)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 0 2 2 20.00%
OTHER 5 3 8 80.00%
---------- ---------- ----------
5 5 10
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