[BEGIN]
REFERENCE HAIRPIN
*************************************************************************************************************************
ID : mmu-mir-674
DESCRIPTION : mmu-mir-674 MI0004611 Mus musculus mir-674 stem-loop
CHROMOSOME : 2
SPAN : 117010863 - 117010962
LENGTH : 100
SEQUENCE : GGCCTAGTCATCACCCTGAGCCTTGCACTGAGATGGGAGTGGTGTAAGGCTCAGGTATGCACAGCTCCCATCTCAGAACAAGGCTCGGGTGTGCTCAGCT
OVERHANG THRESHOLD : 40%
*************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-674
ACCID : MI0004611
PARENT : mmu-mir-674
CHROMOSOME : 2
START : 117010863
STOP : 117010962
OFFSET : 25..46
SEQUENCE : GCACTGAGATGGGAGTGGTGTA
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURESTAR
ID : mmu-miR-674*
ACCID : MI0004611
PARENT : mmu-mir-674
CHROMOSOME : 2
START : 117010863
STOP : 117010962
OFFSET : 60..81
SEQUENCE : CACAGCTCCCATCTCAGAACAA
STRAND : +
******************************
*** MATURE ***
____________________________________________________________________________________________________
GGCCTAGTCATCACCCTGAGCCTTGCACTGAGATGGGAGTGGTGTAAGGCTCAGGTATGCACAGCTCCCATCTCAGAACAAGGCTCGGGTGTGCTCAGCT REF 2 117010863 - 117010962
GCACTGAGATGGGAGTGGTGTA MATURE 2 117010888 - 117011008 mmu-miR-674 +
CACAGCTCCCATCTCAGAACAA MATURESTAR 2 117010923 - 117011043 mmu-miR-674* +
____________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........................GCACTGAGATGGGAGTGGTGTAt...................................................... 43951_27_0_0_0_0_49 MATURE 76 15.64 27 14.14 49 16.61 22
........................GCACTGAGATGGGAGTGGTGTAA...................................................... 40963_30_0_0_0_0_36 MATURE 66 13.58 30 15.71 36 12.20 23
........................GCACTGAGATGGGAGTGGTGT........................................................ 18619_10_0_0_0_0_20 MATURE 30 6.17 10 5.24 20 6.78 21
........................GCACTGAGATGGGAGTGGTaTAt...................................................... 33655_6_0_0_0_0_16 MATURE 22 4.53 6 3.14 16 5.42 19A2
........................GCACTGAGATGGGAGTGGTGTAc...................................................... 17610_8_0_0_0_0_13 MATURE 21 4.32 8 4.19 13 4.41 22
........................GCACTGAGATGGGAGTGaTGT........................................................ 7191_6_0_0_0_0_13 MATURE 19 3.91 6 3.14 13 4.41 17A3
........................GCACTGAGATGGGAGTGGTGTA....................................................... 41930_3_0_0_0_0_10 MATURE 13 2.67 3 1.57 10 3.39 22
........................GCACTGAGATGGGAGTGGTGTAg...................................................... 21217_2_0_0_0_0_10 MATURE 12 2.47 2 1.05 10 3.39 22
.......................TGCACTGAGATGGGAGTGGTGTAt...................................................... 29495_4_0_0_0_0_8 MATURE 12 2.47 4 2.09 8 2.71 23
........................GCACTGAGATGGGAGTGGTaTAA...................................................... 11804_7_0_0_0_0_5 MATURE 12 2.47 7 3.66 5 1.69 19A3
........................GCACTGAGATGGGAGTGaTGTAt...................................................... 35951_7_0_0_0_0_4 MATURE 11 2.26 7 3.66 4 1.36 17A4
.......................TGCACTGAGATGGGAGTGGTGTA....................................................... 41692_5_0_0_0_0_6 MATURE 11 2.26 5 2.62 6 2.03 23
........................GCACTGAGATGGGAGTGGTGTAAt..................................................... 17848_3_0_0_0_0_5 MATURE 8 1.65 3 1.57 5 1.69 23
........................GCACTGAGATGGGAGTGGTGaAA...................................................... 43059_5_0_0_0_0_2 MATURE 7 1.44 5 2.62 2 0.68 20A2
........................GCACTGAGATGGGAGTGcTGTAt...................................................... 32109_1_0_0_0_0_6 MATURE 7 1.44 1 0.52 6 2.03 17C4
........................GCACTGAGATGGGAGTGcTGTAA...................................................... 28691_2_0_0_0_0_5 MATURE 7 1.44 2 1.05 5 1.69 17C5
........................GCACTGAGATGGGAGTGGaGTAt...................................................... 39585_2_0_0_0_0_4 MATURE 6 1.23 2 1.05 4 1.36 18A3
.......................TGCACTGAGATGGGAGTGGTGTAAt..................................................... 28832_0_0_0_0_0_6 MATURE 6 1.23 0 0.00 6 2.03 24
........................GCACTGAGATGGGAGTGcTGT........................................................ 13115_1_0_0_0_0_4 MATURE 5 1.03 1 0.52 4 1.36 17C3
........................GCACTGAGATGGGAGTGGT.......................................................... 9649_2_0_0_0_0_3 MATURE 5 1.03 2 1.05 3 1.02 19
........................GCACTGAGATGGGAGTGGTGcAA...................................................... 42566_0_0_0_0_0_5 MATURE 5 1.03 0 0.00 5 1.69 20C2
........................GCACTGAGATGGGAGTGaTGTA....................................................... 40142_3_0_0_0_0_2 MATURE 5 1.03 3 1.57 2 0.68 17A4
........................GCACTGAGATGGGAGTGaTGTAA...................................................... 36197_3_0_0_0_0_2 MATURE 5 1.03 3 1.57 2 0.68 17A5
........................GCACTGAGATGGGAGTGGTGTAAa..................................................... 2606_4_0_0_0_0_1 MATURE 5 1.03 4 2.09 1 0.34 23
........................GCACTGAGATGGGAGTGGaGT........................................................ 2357_3_0_0_0_0_2 MATURE 5 1.03 3 1.57 2 0.68 18A2
........................GCACTGAGATGGGAGTGGTGcAAt..................................................... 32114_1_0_0_0_0_3 MATURE 4 0.82 1 0.52 3 1.02 20C2
........................GCACTGAGATGGGAGTGtTGT........................................................ 28875_2_0_0_0_0_2 MATURE 4 0.82 2 1.05 2 0.68 17T3
.......................TGCACTGAGATGGGAGTGGTGTAA...................................................... 40553_1_0_0_0_0_3 MATURE 4 0.82 1 0.52 3 1.02 24
........................GCACTGAGATGGGAGTGGaGTAA...................................................... 34933_3_0_0_0_0_1 MATURE 4 0.82 3 1.57 1 0.34 18A4
........................GCACTGAGATGGGAGTGtTGTAt...................................................... 28167_3_0_0_0_0_1 MATURE 4 0.82 3 1.57 1 0.34 17T4
.........................CACTGAGATGGGAGTGGTGTAA...................................................... 43121_1_0_0_0_0_2 MATURE 3 0.62 1 0.52 2 0.68 22
........................GCACTGAGATGGGAGTGGTcTAt...................................................... 14127_2_0_0_0_0_1 MATURE 3 0.62 2 1.05 1 0.34 19C2
........................GCACTGAGATGGGAGTGGTGTAAc..................................................... 2173_3_0_0_0_0_0 MATURE 3 0.62 3 1.57 0 0.00 23
........................GCACTGAGATGGGAGTGGcGT........................................................ 18124_2_0_0_0_0_1 MATURE 3 0.62 2 1.05 1 0.34 18C2
.......................TGCACTGAGATGGGAGTGGTGTAAc..................................................... 12770_3_0_0_0_0_0 MATURE 3 0.62 3 1.57 0 0.00 24
.......................TGCACTGAGATGGGAGTGGTGTAAa..................................................... 40332_0_0_0_0_0_2 MATURE 2 0.41 0 0.00 2 0.68 24
........................GCACTGAGATGGGAGTGGTGc........................................................ 18358_0_0_0_0_0_2 MATURE 2 0.41 0 0.00 2 0.68 20
........................GCACTGAGATGGGAGTGGTGa........................................................ 20660_1_0_0_0_0_1 MATURE 2 0.41 1 0.52 1 0.34 20
........................GCACTGAGATGGGAGTGGaGTAg...................................................... 2988_1_0_0_0_0_1 MATURE 2 0.41 1 0.52 1 0.34 18A3
........................GCACTGAGATGGGAGTaGTGTA....................................................... 25429_2_0_0_0_0_0 MATURE 2 0.41 2 1.05 0 0.00 16A5
........................GCACTGAGATGGGAGTGGcGTAA...................................................... 17127_1_0_0_0_0_1 MATURE 2 0.41 1 0.52 1 0.34 18C4
........................GCACTGAGATGGGAGTGGTGcAAa..................................................... 5940_2_0_0_0_0_0 MATURE 2 0.41 2 1.05 0 0.00 20C2
........................GCACTGAGATGGGAGTGGTGTg....................................................... 39809_0_0_0_0_0_2 MATURE 2 0.41 0 0.00 2 0.68 21
........................GCACTGAGATGGGAGTGGTaTAc...................................................... 24075_0_0_0_0_0_2 MATURE 2 0.41 0 0.00 2 0.68 19A2
........................GCACTGAGATGGGAGTGGTaTAg...................................................... 7049_1_0_0_0_0_1 MATURE 2 0.41 1 0.52 1 0.34 19A2
.......................TGCACTGAGATGGGAGTGGcGTAAt..................................................... 20681_1_0_0_0_0_1 MATURE 2 0.41 1 0.52 1 0.34 19C4
........................GCACTGAGATGGGAGTGGTaTA....................................................... 22535_0_0_0_0_0_2 MATURE 2 0.41 0 0.00 2 0.68 19A2
........................GCACTGAGATGGGAGTGGTGTAAG..................................................... 23021_1_0_0_0_0_1 MATURE 2 0.41 1 0.52 1 0.34 24
........................GCACTGAGATGGGAGTGGTGTt....................................................... 11442_0_0_0_0_0_2 MATURE 2 0.41 0 0.00 2 0.68 21
........................GCACTGAGATGGGAGTtGTGT........................................................ 38885_0_0_0_0_0_2 MATURE 2 0.41 0 0.00 2 0.68 16T4
........................GCACTGAGATGGGAGTGGTtTA....................................................... 33325_1_0_0_0_0_1 MATURE 2 0.41 1 0.52 1 0.34 19T2
........................GCACTGAGATGGGAGTGGcGTAAc..................................................... 27099_1_0_0_0_0_1 MATURE 2 0.41 1 0.52 1 0.34 18C4
........................GCACTGAGATGGGAGTGaTGTc....................................................... 8656_0_0_0_0_0_2 MATURE 2 0.41 0 0.00 2 0.68 17A3
........................GCACTGAGATGGGAGTGGTGTtAGt.................................................... 10366_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 21T2
........................GCACTGAGATGGGAGTGtTGTAA...................................................... 23670_1_0_0_0_0_0 MATURE 1 0.21 1 0.52 0 0.00 17T5
........................GCACcGAGATGGGAGTGGTGTAg...................................................... 29173_1_0_0_0_0_0 MATURE 1 0.21 1 0.52 0 0.00 4C17
........................GCACTGAGATGGGAGTGGTGaAAG..................................................... 22372_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 20A3
.......................TGCACTGAGATGGGAGTGaTGTg....................................................... 27528_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 18A3
.......................TGCACTGAGATGGGAGTaGTGTc....................................................... 20073_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 17A4
.......................TGCACTGAGATGGGAGTtGTGT........................................................ 28590_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 17T4
........................GCACTGAGATGGGAGTGGTcTA....................................................... 35221_1_0_0_0_0_0 MATURE 1 0.21 1 0.52 0 0.00 19C2
.......................TGCACTGAGATGGGAGTtGTGa........................................................ 9370_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 17T3
....................CCgTGCACTGAGATGGGAGTGGTGT........................................................ 26880_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 2G22
........................GCACTGAGATGGGAGTGGTtTAt...................................................... 4790_1_0_0_0_0_0 MATURE 1 0.21 1 0.52 0 0.00 19T2
........................GCACTGAGATGGGAGTcGTGT........................................................ 4307_1_0_0_0_0_0 MATURE 1 0.21 1 0.52 0 0.00 16C4
........................GCACTGAGATGGGAGTGtTGTA....................................................... 40201_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 17T4
.......................TGCACTGAGATGGGAGTGGTGT........................................................ 277_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 22
.......................TGCACTGAGATGGGAGTGGTGTAg...................................................... 3191_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 23
.......................TGCAgTGAGATGGGAGTGGTGT........................................................ 24979_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 4G17
........................GCACTGAGATGGGAGTGGTGgAAt..................................................... 41166_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 20G2
........................GCACTGAGATGGGAGTGGcGTAg...................................................... 26185_1_0_0_0_0_0 MATURE 1 0.21 1 0.52 0 0.00 18C3
........................GCACTGAGATGGGAGTGGTaTAAG..................................................... 3108_1_0_0_0_0_0 MATURE 1 0.21 1 0.52 0 0.00 19A4
........................GCACTGAGATGGGAGTGGTaTAAa..................................................... 17900_1_0_0_0_0_0 MATURE 1 0.21 1 0.52 0 0.00 19A3
.......................TGCACTGAGATGGGAGTGaTGTAt...................................................... 43924_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 18A4
........................GCACTGAGATGGGAGTGGcGTAAa..................................................... 16745_1_0_0_0_0_0 MATURE 1 0.21 1 0.52 0 0.00 18C4
........................GCACTGAGATGGGAGTGGgGTAAa..................................................... 19792_1_0_0_0_0_0 MATURE 1 0.21 1 0.52 0 0.00 18G4
.......................TGCACTGAGATGGGAGTGGTtTAt...................................................... 1024_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 20T2
........................GCACTGAGATGGGAGTGGcGTAAt..................................................... 9542_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 18C4
........................GCACTGAGATGGGAGTGGTaTAAt..................................................... 24548_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 19A3
........................GCACTGAGATGGGAGTGGTtTAAa..................................................... 30748_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 19T3
........................GCACTGAGATGGGAGTGaTGTt....................................................... 34206_1_0_0_0_0_0 MATURE 1 0.21 1 0.52 0 0.00 17A3
......................TTGCACTGAGATGGGAGTGGTGTAt...................................................... 7483_1_0_0_0_0_0 MATURE 1 0.21 1 0.52 0 0.00 24
.......................TGCACTGAGATGGGAGTGtTGTA....................................................... 44255_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 18T4
........................GCACTGAGATGGGAGTGGcGTAt...................................................... 33056_1_0_0_0_0_0 MATURE 1 0.21 1 0.52 0 0.00 18C3
........................GCACTGAGATGGGAGTGaTGTAg...................................................... 14617_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 17A4
.......................TGCACTGAGATGGaAGTGGTGTA....................................................... 37477_1_0_0_0_0_0 MATURE 1 0.21 1 0.52 0 0.00 13A9
........................GCACTGAGATGGGAGTGGgGTAA...................................................... 1060_0_0_0_0_0_1 MATURE 1 0.21 0 0.00 1 0.34 18G4
---------- ---------- ----------
486 191 295
(39.30) (60.70)
*** MATURESTAR ***
____________________________________________________________________________________________________
GGCCTAGTCATCACCCTGAGCCTTGCACTGAGATGGGAGTGGTGTAAGGCTCAGGTATGCACAGCTCCCATCTCAGAACAAGGCTCGGGTGTGCTCAGCT REF 2 117010863 - 117010962
GCACTGAGATGGGAGTGGTGTA MATURE 2 117010888 - 117011008 mmu-miR-674 +
CACAGCTCCCATCTCAGAACAA MATURESTAR 2 117010923 - 117011043 mmu-miR-674* +
____________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
............................................................ACAGCTCCCATCTCAGAACA..................... 32915_2_0_0_0_0_1 MATURESTAR 3 37.50 2 66.67 1 20.00 20
........................................................ATGCACAGCTCCCATCTCAGAAC...................... 25586_0_0_0_0_0_1 MATURESTAR 1 12.50 0 0.00 1 20.00 23
.............................................................CAGCTCCCATCTCAGAACA..................... 30195_0_0_0_0_0_1 MATURESTAR 1 12.50 0 0.00 1 20.00 19
............................................................ACAaCTCCCATCTCAGAACAAt................... 44189_1_0_0_0_0_0 MATURESTAR 1 12.50 1 33.33 0 0.00 3A17
........................................................ATGgACAGCTCCCATCTCAGAAC...................... 24274_0_0_0_0_0_1 MATURESTAR 1 12.50 0 0.00 1 20.00 3G19
........................................................ATaCACAGCTCCCATCTCAGAAC...................... 22235_0_0_0_0_0_1 MATURESTAR 1 12.50 0 0.00 1 20.00 2A20
---------- ---------- ----------
8 3 5
(37.50) (62.50)
*** OTHER ***
____________________________________________________________________________________________________
GGCCTAGTCATCACCCTGAGCCTTGCACTGAGATGGGAGTGGTGTAAGGCTCAGGTATGCACAGCTCCCATCTCAGAACAAGGCTCGGGTGTGCTCAGCT REF 2 117010863 - 117010962
GCACTGAGATGGGAGTGGTGTA MATURE 2 117010888 - 117011008 mmu-miR-674 +
CACAGCTCCCATCTCAGAACAA MATURESTAR 2 117010923 - 117011043 mmu-miR-674* +
____________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
GGCgTAGTCATCACCCTGAGCCTT............................................................................. 15495_0_0_0_0_0_1 OTHER 1 100.00 0 0 1 100.00 3G20
---------- ---------- ----------
1 0 1
(0.00) (100.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 191 295 486 98.18%
MATURESTAR 3 5 8 1.62%
OTHER 0 1 1 0.20%
---------- ---------- ----------
194 301 495
[END]