[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************************
ID : mmu-mir-671
DESCRIPTION : mmu-mir-671 MI0004133 Mus musculus mir-671 stem-loop
CHROMOSOME : 5
SPAN : 24097932 - 24098029
LENGTH : 98
SEQUENCE : TGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGAGCCGTAGAGCCA
OVERHANG THRESHOLD : 40%
***********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-671-3p
ACCID : MI0004133
PARENT : mmu-mir-671
CHROMOSOME : 5
START : 24097932
STOP : 24098029
OFFSET : 58..78
SEQUENCE : TCCGGTTCTCAGGGCTCCACC
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-671-5p
ACCID : MI0004133
PARENT : mmu-mir-671
CHROMOSOME : 5
START : 24097932
STOP : 24098029
OFFSET : 19..41
SEQUENCE : AGGAAGCCCTGGAGGGGCTGGAG
STRAND : +
******************************
*** MATURE-3P ***
__________________________________________________________________________________________________
TGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGAGCCGTAGAGCCA REF 5 24097932 - 24098029
TCCGGTTCTCAGGGCTCCACC MATURE-3P 5 24097990 - 24098107 mmu-miR-671-3p +
AGGAAGCCCTGGAGGGGCTGGAG MATURE-5P 5 24097951 - 24098070 mmu-miR-671-5p +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.........................................................TCCGGTTCTCAGGGCTCCACCT.................... 26918_2_0_0_0_0_7 MATURE-3P 9 37.50 2 28.57 7 41.18 22
.........................................................TCCGGTTCTCAGGGCTCCACCTt................... 8422_2_0_0_0_0_1 MATURE-3P 3 12.50 2 28.57 1 5.88 22
.........................................................TCCGGTTCTCAGGGCTCCACCTa................... 35143_0_0_0_0_0_2 MATURE-3P 2 8.33 0 0.00 2 11.76 22
.........................................................TCCGGTTCTCAGGGCTgCACCa.................... 30507_0_0_0_0_0_1 MATURE-3P 1 4.17 0 0.00 1 5.88 16G4
........................................................CTCCGGTTCTCAGGGCTCCACt..................... 17892_0_0_0_0_0_1 MATURE-3P 1 4.17 0 0.00 1 5.88 21
........................................................CTCCGGTTCTCAGGGCTCCACCc.................... 19967_0_0_0_0_0_1 MATURE-3P 1 4.17 0 0.00 1 5.88 22
.........................................................TCCGGTTCTCAGGGCTaCACCT.................... 37351_0_0_0_0_0_1 MATURE-3P 1 4.17 0 0.00 1 5.88 16A5
........................................................CTCCGGTTCTCAGGGCTCCACCa.................... 36542_0_0_0_0_0_1 MATURE-3P 1 4.17 0 0.00 1 5.88 22
.........................................................TCCGGTTCTCAGGGCTCCACCc.................... 27970_0_0_0_0_0_1 MATURE-3P 1 4.17 0 0.00 1 5.88 21
.........................................................TCCGGTTCTCAGGGCTCCACCa.................... 19171_0_0_0_0_0_1 MATURE-3P 1 4.17 0 0.00 1 5.88 21
.........................................................TCCGGTTCTCAGGGCTCCACt..................... 41474_1_0_0_0_0_0 MATURE-3P 1 4.17 1 14.29 0 0.00 20
.........................................................TCCGGTTCTCAGGGCTCCACCTC................... 24076_1_0_0_0_0_0 MATURE-3P 1 4.17 1 14.29 0 0.00 23
.........................................................TCCGGTTCTCAGGGCTaCACCc.................... 5641_1_0_0_0_0_0 MATURE-3P 1 4.17 1 14.29 0 0.00 16A4
---------- ---------- ----------
24 7 17
(29.17) (70.83)
*** MATURE-5P ***
__________________________________________________________________________________________________
TGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGAGCCGTAGAGCCA REF 5 24097932 - 24098029
TCCGGTTCTCAGGGCTCCACC MATURE-3P 5 24097990 - 24098107 mmu-miR-671-3p +
AGGAAGCCCTGGAGGGGCTGGAG MATURE-5P 5 24097951 - 24098070 mmu-miR-671-5p +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.................GAGGAAGCCCTGGAGGGGCTGGAGG......................................................... 25711_4_0_0_0_0_9 MATURE-5P 13 7.03 4 5.71 9 7.83 25
..................AGGAAGCCCTGGAGGGGCTGaAGGT........................................................ 24365_8_0_0_0_0_5 MATURE-5P 13 7.03 8 11.43 5 4.35 20A4
.................GAGGAAGCCCTGGAGGGGCTGGAt.......................................................... 41749_6_0_0_0_0_6 MATURE-5P 12 6.49 6 8.57 6 5.22 23
..................AGGAAGCCCTGGAGGGGCTGGAaGT........................................................ 3990_3_0_0_0_0_7 MATURE-5P 10 5.41 3 4.29 7 6.09 22A2
.................GAGGAAGCCCTGGAGGGGCTGGAGt......................................................... 24240_3_0_0_0_0_6 MATURE-5P 9 4.86 3 4.29 6 5.22 24
.................GAGGAAGCCCTGGAGGGGCTGGAG.......................................................... 38405_2_0_0_0_0_7 MATURE-5P 9 4.86 2 2.86 7 6.09 24
..................AGGAAGCCCTGGAGGGGCTGGAGGT........................................................ 17803_2_0_0_0_0_6 MATURE-5P 8 4.32 2 2.86 6 5.22 25
.................GAGGAAGCCCTGGAGGGGCTGaAGG......................................................... 38396_6_0_0_0_0_1 MATURE-5P 7 3.78 6 8.57 1 0.87 21A3
.................GAGGAAGCCCTGGAGGGGCTGGAGa......................................................... 10578_1_0_0_0_0_5 MATURE-5P 6 3.24 1 1.43 5 4.35 24
..................AGGAAGCCCTGGAGGGGCTGGAGGa........................................................ 20135_2_0_0_0_0_4 MATURE-5P 6 3.24 2 2.86 4 3.48 24
...................GGAAGCCCTGGAGGGGCTGGAGGTa....................................................... 42428_4_0_0_0_0_2 MATURE-5P 6 3.24 4 5.71 2 1.74 24
.....................AAGCCCTGGAGGGGCTGGAGGTtAT..................................................... 43611_2_0_0_0_0_4 MATURE-5P 6 3.24 2 2.86 4 3.48 22T2
................GGAGGAAGCCCTGGAGGGGCTGGAt.......................................................... 15211_2_0_0_0_0_4 MATURE-5P 6 3.24 2 2.86 4 3.48 24
..................AGGAAGCCCTGGAGGGGCTGGAGGg........................................................ 13615_2_0_0_0_0_2 MATURE-5P 4 2.16 2 2.86 2 1.74 24
.................GAGGAAGCCCTGGAGGGGCTaGAt.......................................................... 43380_1_0_0_0_0_3 MATURE-5P 4 2.16 1 1.43 3 2.61 20A2
.................GAGGAAGCCCTGGAGGGGCTGGAc.......................................................... 33827_1_0_0_0_0_3 MATURE-5P 4 2.16 1 1.43 3 2.61 23
..................AGGAAGCCCTGGAGGGGCTaGAGGa........................................................ 40031_1_0_0_0_0_2 MATURE-5P 3 1.62 1 1.43 2 1.74 19A4
................GGAGGAAGCCCTGGAGGGGCTGGAa.......................................................... 18512_1_0_0_0_0_2 MATURE-5P 3 1.62 1 1.43 2 1.74 24
...................GGAAGCCCTGGAGGGGCTGcAGGTa....................................................... 23699_0_0_0_0_0_3 MATURE-5P 3 1.62 0 0.00 3 2.61 19C4
.................GAGGAAGCCCTGGAGGGGCTaGAGt......................................................... 32537_2_0_0_0_0_1 MATURE-5P 3 1.62 2 2.86 1 0.87 20A3
..................AGGAAGCCCTGGAGGGGCTGtAGGT........................................................ 19988_1_0_0_0_0_2 MATURE-5P 3 1.62 1 1.43 2 1.74 20T4
..................AGGAAGCCCTGGAGGGGCTGaAGGc........................................................ 6710_0_0_0_0_0_2 MATURE-5P 2 1.08 0 0.00 2 1.74 20A3
...................GGAAGCCCTGGAGGGGCTGaAGGTt....................................................... 17258_1_0_0_0_0_1 MATURE-5P 2 1.08 1 1.43 1 0.87 19A4
................GGAGGAAGCCCTGGAGGGGCTGGAc.......................................................... 18776_1_0_0_0_0_1 MATURE-5P 2 1.08 1 1.43 1 0.87 24
.................GAGGAAGCCCTGGAGGGGCTaGAGG......................................................... 24850_0_0_0_0_0_2 MATURE-5P 2 1.08 0 0.00 2 1.74 20A4
.................GAGGAAGCCCTGGAGGGGtTGGAG.......................................................... 35903_1_0_0_0_0_1 MATURE-5P 2 1.08 1 1.43 1 0.87 18T5
..................AGGAAGCCCTGGAGGGGCTGGAtGT........................................................ 38923_1_0_0_0_0_1 MATURE-5P 2 1.08 1 1.43 1 0.87 22T2
.................GAGGAAGCCCTGGAGGGGCTGGA........................................................... 13162_1_0_0_0_0_1 MATURE-5P 2 1.08 1 1.43 1 0.87 23
..................AGGAAGCCCTGGAGGGGCTaGAGGT........................................................ 38628_1_0_0_0_0_1 MATURE-5P 2 1.08 1 1.43 1 0.87 19A5
.................GAGGAAGCCCTGGAGGGGCTGaAG.......................................................... 36346_1_0_0_0_0_1 MATURE-5P 2 1.08 1 1.43 1 0.87 21A2
.................GAGGAAGCCCTGGAGGGGCTGaAGt......................................................... 34848_0_0_0_0_0_2 MATURE-5P 2 1.08 0 0.00 2 1.74 21A2
.................GAGGAAGCCCTGGAGGGGCcGGAGG......................................................... 8234_1_0_0_0_0_1 MATURE-5P 2 1.08 1 1.43 1 0.87 19C5
.................GAGGAAGCCCTGGAGGGGCTtGAGG......................................................... 17787_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 20T4
................GGAGGAAGCCCTGGAGGGGCaGGA........................................................... 23147_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 20A3
.................GAGGAAGCCCTGGAGGGGCaGGAGt......................................................... 16150_1_0_0_0_0_0 MATURE-5P 1 0.54 1 1.43 0 0.00 19A4
...................GGAAGCCCTGGAGGGGCTGGAGGTt....................................................... 43496_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 24
..................AGGAAGCCCTGGAGGGGCTGaAGGa........................................................ 15547_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 20A3
...................GGAAGCCCTGGAGGGGCTGaAGGa........................................................ 35134_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 19A3
.................GAGGAAGCCCTGGAGGGGCTGcAGG......................................................... 11841_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 21C3
......................AGCCCTGGAGGGGCTGGAGGTtATt.................................................... 23313_1_0_0_0_0_0 MATURE-5P 1 0.54 1 1.43 0 0.00 21T2
.................GAGGAAGCCCTGGAGGGGCTaGAa.......................................................... 33045_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 20A2
.................GAGGAAGCCCTGGAGGGGCTaGAG.......................................................... 3905_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 20A3
..................AGGAAGCCCTGGAGGGGCTGGAGGc........................................................ 29606_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 24
.................GAGGAAGCCCTGGAGGGGCaGGAc.......................................................... 20559_1_0_0_0_0_0 MATURE-5P 1 0.54 1 1.43 0 0.00 19A3
.................GAGGtAGCCCTGGAGGGGCTGGAGt......................................................... 14537_1_0_0_0_0_0 MATURE-5P 1 0.54 1 1.43 0 0.00 4T19
..................AGGAAGCCCTGGAGGGGCTGcAGGT........................................................ 38791_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 20C4
.................GAGGAAGCCCTaGAGGGGCTGGAGt......................................................... 39161_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 11A12
...................GGAAGCCCTGGAGGGGCTGGAaGTt....................................................... 30182_1_0_0_0_0_0 MATURE-5P 1 0.54 1 1.43 0 0.00 21A2
.................GAGGAAGCCCTGGAGGGGCgGGAGt......................................................... 17366_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 19G4
.................GAGGAAGCCCTGGAGGGGCcGGAt.......................................................... 14389_1_0_0_0_0_0 MATURE-5P 1 0.54 1 1.43 0 0.00 19C3
.................GAGGAAGCCCTGGAGGGGCTGGAa.......................................................... 1321_1_0_0_0_0_0 MATURE-5P 1 0.54 1 1.43 0 0.00 23
................GGAGGAAGCCCTGGAGGGGCTaGAG.......................................................... 24057_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 21A3
.................GAGGAAGCCCTGGAGGGGCTGcAGt......................................................... 13092_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 21C2
.................GAGGAAGCCCTGGAGGGGCTcGAGt......................................................... 9722_1_0_0_0_0_0 MATURE-5P 1 0.54 1 1.43 0 0.00 20C3
................GGAGGAAGCCCTGGAGGaGCTGG............................................................ 40234_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 17A5
.....................AAGCCCTGGAGGGGCTGGAGGTGAT..................................................... 40610_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 25
.................GAGGAAGCCCTGGAGGGGCTcGAt.......................................................... 5602_0_0_0_0_0_1 MATURE-5P 1 0.54 0 0.00 1 0.87 20C2
---------- ---------- ----------
185 70 115
(37.84) (62.16)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 7 17 24 11.48%
MATURE-5P 70 115 185 88.52%
---------- ---------- ----------
77 132 209
[END]