[BEGIN]

REFERENCE HAIRPIN
**************************************************************************************************************************************************
ID                 : mmu-mir-669h
DESCRIPTION        : mmu-mir-669h MI0006289 Mus musculus miR-669h stem-loop
CHROMOSOME         : 2
SPAN               : 10439782 - 10439906
LENGTH             : 125
SEQUENCE           : TGTGATGCCCACCAAAAATATGCATGGGTGTATAGTTGAGTGCATATTCATTTCTCTATATGAATATGCATATACACACATGCACACACACACACACTCACACACAGGAATGACACTCGTTTATC
OVERHANG THRESHOLD : 40%
**************************************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-669h-3p
ACCID      : MI0006289
PARENT     : mmu-mir-669h
CHROMOSOME : 2
START      : 10439782
STOP       : 10439906
OFFSET     : 65..86
SEQUENCE   : TATGCATATACACACATGCACA
STRAND     : +
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-669h-5p
ACCID      : MI0006289
PARENT     : mmu-mir-669h
CHROMOSOME : 2
START      : 10439782
STOP       : 10439906
OFFSET     : 20..43
SEQUENCE   : ATGCATGGGTGTATAGTTGAGTGC
STRAND     : +
******************************



*** MATURE-3P ***
_____________________________________________________________________________________________________________________________
TGTGATGCCCACCAAAAATATGCATGGGTGTATAGTTGAGTGCATATTCATTTCTCTATATGAATATGCATATACACACATGCACACACACACACACTCACACACAGGAATGACACTCGTTTATC REF                  2                    10439782 - 10439906  
                                                                TATGCATATACACACATGCACA                                        MATURE-3P            2                    10439847 - 10439992  mmu-miR-669h-3p      +                    
                   ATGCATGGGTGTATAGTTGAGTGC                                                                                   MATURE-5P            2                    10439802 - 10439949  mmu-miR-669h-5p      +                    
_____________________________________________________________________________________________________________________________

                                                                                                                         -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.........................................................................ACACACATGCACACACACA..................................   28463_0_0_0_0_0_1    MATURE-3P            1       100.00            0            0            1       100.00                        19   
                                                                                                                                                                  ----------                ----------                ----------   
                                                                                                                                                                           1                         0                         1                                          
                                                                                                                                                                                                (0.00)                  (100.00)                                       




*** OTHER ***
_____________________________________________________________________________________________________________________________
TGTGATGCCCACCAAAAATATGCATGGGTGTATAGTTGAGTGCATATTCATTTCTCTATATGAATATGCATATACACACATGCACACACACACACACTCACACACAGGAATGACACTCGTTTATC REF                  2                    10439782 - 10439906  
                                                                TATGCATATACACACATGCACA                                        MATURE-3P            2                    10439847 - 10439992  mmu-miR-669h-3p      +                    
                   ATGCATGGGTGTATAGTTGAGTGC                                                                                   MATURE-5P            2                    10439802 - 10439949  mmu-miR-669h-5p      +                    
_____________________________________________________________________________________________________________________________

                                                                                                                         -SEQ-               -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
..................................................................................CACACACACACACACTCACAC.......................   37223_19_0_0_0_0_1        OTHER           20        60.61           19        90.48            1         8.33                        21   
.........................................................................ACACACATGCACACACACACAC...............................    29576_1_0_0_0_0_2        OTHER            3         9.09            1         4.76            2        16.67                        22   
..........................................................................CACACATGCACACACACACACAC.............................    29275_1_0_0_0_0_2        OTHER            3         9.09            1         4.76            2        16.67                        23   
................................................................................TGCACACACACACACACTCACACAC.....................     2658_0_0_0_0_0_2        OTHER            2         6.06            0         0.00            2        16.67                        25   
.........................................................................ACACACATGCACACACACACACA..............................     3008_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         8.33                        23   
.........................................................................ACACACATGCACACACACAC.................................    20412_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         8.33                        20   
..............................................................................CATGCACACACACACACAC.............................    20912_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         8.33                        19   
..................................................................................CACACACACACACACTCACACAC.....................     7927_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         8.33                        23   
...................................................................................ACACACACACACACTCACACAC.....................    11632_0_0_0_0_0_1        OTHER            1         3.03            0         0.00            1         8.33                        22   
                                                                                                                                                                   ----------                ----------                ----------   
                                                                                                                                                                           33                        21                        12                                          
                                                                                                                                                                                                (63.64)                   (36.36)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P               0               1               1           2.94%
          OTHER              21              12              33          97.06%
                     ----------      ----------      ----------                
                             21              13              34                



[END]
