[BEGIN]
REFERENCE HAIRPIN
**************************************************************************************************************************************************
ID : mmu-mir-669h
DESCRIPTION : mmu-mir-669h MI0006289 Mus musculus miR-669h stem-loop
CHROMOSOME : 2
SPAN : 10439782 - 10439906
LENGTH : 125
SEQUENCE : TGTGATGCCCACCAAAAATATGCATGGGTGTATAGTTGAGTGCATATTCATTTCTCTATATGAATATGCATATACACACATGCACACACACACACACTCACACACAGGAATGACACTCGTTTATC
OVERHANG THRESHOLD : 40%
**************************************************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-669h-3p
ACCID : MI0006289
PARENT : mmu-mir-669h
CHROMOSOME : 2
START : 10439782
STOP : 10439906
OFFSET : 65..86
SEQUENCE : TATGCATATACACACATGCACA
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-669h-5p
ACCID : MI0006289
PARENT : mmu-mir-669h
CHROMOSOME : 2
START : 10439782
STOP : 10439906
OFFSET : 20..43
SEQUENCE : ATGCATGGGTGTATAGTTGAGTGC
STRAND : +
******************************
*** MATURE-3P ***
_____________________________________________________________________________________________________________________________
TGTGATGCCCACCAAAAATATGCATGGGTGTATAGTTGAGTGCATATTCATTTCTCTATATGAATATGCATATACACACATGCACACACACACACACTCACACACAGGAATGACACTCGTTTATC REF 2 10439782 - 10439906
TATGCATATACACACATGCACA MATURE-3P 2 10439847 - 10439992 mmu-miR-669h-3p +
ATGCATGGGTGTATAGTTGAGTGC MATURE-5P 2 10439802 - 10439949 mmu-miR-669h-5p +
_____________________________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.........................................................................ACACACATGCACACACACA.................................. 28463_0_0_0_0_0_1 MATURE-3P 1 100.00 0 0 1 100.00 19
---------- ---------- ----------
1 0 1
(0.00) (100.00)
*** OTHER ***
_____________________________________________________________________________________________________________________________
TGTGATGCCCACCAAAAATATGCATGGGTGTATAGTTGAGTGCATATTCATTTCTCTATATGAATATGCATATACACACATGCACACACACACACACTCACACACAGGAATGACACTCGTTTATC REF 2 10439782 - 10439906
TATGCATATACACACATGCACA MATURE-3P 2 10439847 - 10439992 mmu-miR-669h-3p +
ATGCATGGGTGTATAGTTGAGTGC MATURE-5P 2 10439802 - 10439949 mmu-miR-669h-5p +
_____________________________________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................................................................................CACACACACACACACTCACAC....................... 37223_19_0_0_0_0_1 OTHER 20 60.61 19 90.48 1 8.33 21
.........................................................................ACACACATGCACACACACACAC............................... 29576_1_0_0_0_0_2 OTHER 3 9.09 1 4.76 2 16.67 22
..........................................................................CACACATGCACACACACACACAC............................. 29275_1_0_0_0_0_2 OTHER 3 9.09 1 4.76 2 16.67 23
................................................................................TGCACACACACACACACTCACACAC..................... 2658_0_0_0_0_0_2 OTHER 2 6.06 0 0.00 2 16.67 25
.........................................................................ACACACATGCACACACACACACA.............................. 3008_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 8.33 23
.........................................................................ACACACATGCACACACACAC................................. 20412_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 8.33 20
..............................................................................CATGCACACACACACACAC............................. 20912_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 8.33 19
..................................................................................CACACACACACACACTCACACAC..................... 7927_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 8.33 23
...................................................................................ACACACACACACACTCACACAC..................... 11632_0_0_0_0_0_1 OTHER 1 3.03 0 0.00 1 8.33 22
---------- ---------- ----------
33 21 12
(63.64) (36.36)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 0 1 1 2.94%
OTHER 21 12 33 97.06%
---------- ---------- ----------
21 13 34
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