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REFERENCE HAIRPIN
**********************************************************************************************************************************
ID                 : mmu-mir-669c
DESCRIPTION        : mmu-mir-669c MI0004673 Mus musculus miR-669c stem-loop
CHROMOSOME         : 2
SPAN               : 10430923 - 10431031
LENGTH             : 109
SEQUENCE           : CCTCCATGTATGTGCATGTGTGTATAGTTGTGTGTGGATGTGTGTATTTGCATATAAATAACATACACACACACACACAAGTAAACACAAGTGCACAAACAGACACAGG
OVERHANG THRESHOLD : 40%
**********************************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-669c
ACCID      : MI0004673
PARENT     : mmu-mir-669c
CHROMOSOME : 2
START      : 10430923
STOP       : 10431031
OFFSET     : 24..45
SEQUENCE   : ATAGTTGTGTGTGGATGTGTGT
STRAND     : +
******************************



*** MATURE ***
_____________________________________________________________________________________________________________
CCTCCATGTATGTGCATGTGTGTATAGTTGTGTGTGGATGTGTGTATTTGCATATAAATAACATACACACACACACACAAGTAAACACAAGTGCACAAACAGACACAGG REF                  2                    10430923 - 10431031  
                       ATAGTTGTGTGTGGATGTGTGT                                                                 MATURE               2                    10430947 - 10431076  mmu-miR-669c         +                    
_____________________________________________________________________________________________________________

                                                                                                         -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.......................ATAGTTGTGTGTGGATGTGTGT.................................................................   14654_2_0_0_0_0_2       MATURE            4        57.14            2        50.00            2        66.67                        22   
.......................ATAGTTGTGTGTGGATGTGTGTAa...............................................................   29904_1_0_0_0_0_0       MATURE            1        14.29            1        25.00            0         0.00                        23   
.......................ATAGTTGTGTGTGGATGTGTGc.................................................................   22923_1_0_0_0_0_0       MATURE            1        14.29            1        25.00            0         0.00                        21   
.....................GTATAGTTGTGTGTGGATGTcTGTc................................................................   11944_0_0_0_0_0_1       MATURE            1        14.29            0         0.00            1        33.33                      20C3   
                                                                                                                                                  ----------                ----------                ----------   
                                                                                                                                                           7                         4                         3                                          
                                                                                                                                                                               (57.14)                   (42.86)                                       




*** OTHER ***
_____________________________________________________________________________________________________________
CCTCCATGTATGTGCATGTGTGTATAGTTGTGTGTGGATGTGTGTATTTGCATATAAATAACATACACACACACACACAAGTAAACACAAGTGCACAAACAGACACAGG REF                  2                    10430923 - 10431031  
                       ATAGTTGTGTGTGGATGTGTGT                                                                 MATURE               2                    10430947 - 10431076  mmu-miR-669c         +                    
_____________________________________________________________________________________________________________

                                                                                                         -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........................................................AACATACACACACACACAC................................   38026_1_0_0_0_0_3        OTHER            4        57.14            1       100.00            3        50.00                        19   
.........................................................ATAACATACACACACACAC..................................   19978_0_0_0_0_0_1        OTHER            1        14.29            0         0.00            1        16.67                        19   
............................................................ACATACACACACACACACAA..............................   17568_0_0_0_0_0_1        OTHER            1        14.29            0         0.00            1        16.67                        20   
...........................................................AACATACACACACACACACA...............................   10931_0_0_0_0_0_1        OTHER            1        14.29            0         0.00            1        16.67                        20   
                                                                                                                                                  ----------                ----------                ----------   
                                                                                                                                                           7                         1                         6                                          
                                                                                                                                                                               (14.29)                   (85.71)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE               4               3               7          50.00%
          OTHER               1               6               7          50.00%
                     ----------      ----------      ----------                
                              5               9              14                



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