[BEGIN]

REFERENCE HAIRPIN
***********************************************************************************************************************
ID                 : mmu-mir-652
DESCRIPTION        : mmu-mir-652 MI0004965 Mus musculus miR-652 stem-loop
CHROMOSOME         : X
SPAN               : 139173543 - 139173640
LENGTH             : 98
SEQUENCE           : AGGAACAGCTATGTACTGCACAACCCTAGGAGGGGGTGCCATTCACATAGAGTATAATTGAATGGCGCCACTAGGGTTGTGCAGTGTACAGCCTACAC
OVERHANG THRESHOLD : 40%
***********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE
ID         : mmu-miR-652
ACCID      : MI0004965
PARENT     : mmu-mir-652
CHROMOSOME : X
START      : 139173543
STOP       : 139173640
OFFSET     : 61..81
SEQUENCE   : AATGGCGCCACTAGGGTTGTG
STRAND     : +
******************************



*** MATURE ***
__________________________________________________________________________________________________
AGGAACAGCTATGTACTGCACAACCCTAGGAGGGGGTGCCATTCACATAGAGTATAATTGAATGGCGCCACTAGGGTTGTGCAGTGTACAGCCTACAC REF                  X                    139173543 - 139173640 
                                                            AATGGCGCCACTAGGGTTGTG                  MATURE               X                    139173604 - 139173721 mmu-miR-652          +                    
__________________________________________________________________________________________________

                                                                                              -SEQ-                -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
...........................................................GAATGGCGCCACTAGGGTTGTGt.................   34673_27_0_0_0_0_14       MATURE           41        28.87           27        29.35           14        28.00                        22   
...........................................................GAATGGCGCCACTAGGGTTaTGt.................    40299_16_0_0_0_0_8       MATURE           24        16.90           16        17.39            8        16.00                      19A2   
...........................................................GAATGGCGCCACTAGGGcTGTGt.................    35510_11_0_0_0_0_3       MATURE           14         9.86           11        11.96            3         6.00                      17C4   
...........................................................GAATGGCGCCACTAGGGaTGTGt.................     35376_5_0_0_0_0_3       MATURE            8         5.63            5         5.43            3         6.00                      17A4   
...........................................................GAATGGCGCCACTAGaGTTGT...................     17794_4_0_0_0_0_1       MATURE            5         3.52            4         4.35            1         2.00                      15A5   
..........................................................TGAATGGCGCCACTAGGGcTGTGt.................     37097_3_0_0_0_0_1       MATURE            4         2.82            3         3.26            1         2.00                      18C4   
...........................................................GAATGGCGCCACTAGGGTTGTGC.................     16393_2_0_0_0_0_1       MATURE            3         2.11            2         2.17            1         2.00                        23   
...........................................................GAATGGCGCCACTAGGGTTGTGCt................     32881_2_0_0_0_0_1       MATURE            3         2.11            2         2.17            1         2.00                        23   
..........................................................TGAATGGCGCCACTAGGGTTGTGt.................     28626_2_0_0_0_0_1       MATURE            3         2.11            2         2.17            1         2.00                        23   
...........................................................GAATGGCGCCACTAGGGTTGTGa.................      3737_2_0_0_0_0_1       MATURE            3         2.11            2         2.17            1         2.00                        22   
..........................................................TGAATGGCGCCACTAGGGaTGTGt.................     19115_2_0_0_0_0_1       MATURE            3         2.11            2         2.17            1         2.00                      18A4   
...........................................................GAATGGCGCCACTAGGGTTtTGt.................     34345_2_0_0_0_0_1       MATURE            3         2.11            2         2.17            1         2.00                      19T2   
...........................................................GAATGGCGCCACTAGGaTTGT...................     29975_1_0_0_0_0_1       MATURE            2         1.41            1         1.09            1         2.00                      16A4   
.............................................................ATGGCGCCACTAGGGTTGTGt.................      5150_2_0_0_0_0_0       MATURE            2         1.41            2         2.17            0         0.00                        20   
...........................................................GAATGGCGCCACTAGGGaTGTGC.................       833_1_0_0_0_0_1       MATURE            2         1.41            1         1.09            1         2.00                      17A5   
...........................................................GAATGGgGCCACTAGGGTTGTGt.................       195_2_0_0_0_0_0       MATURE            2         1.41            2         2.17            0         0.00                      6G15   
..........................................................TGAATGGCGCCACTAGGaTTGTc..................     14339_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         2.00                      17A4   
...........................................................GAATGGCGCCACTAGGGTTGT...................     36506_1_0_0_0_0_0       MATURE            1         0.70            1         1.09            0         0.00                        21   
...........................................................GAATGGCGCCACTAGGGTTaTGC.................     11600_1_0_0_0_0_0       MATURE            1         0.70            1         1.09            0         0.00                      19A3   
...........................................................GAATGGCGCCACaAGGGTTGTGt.................     27795_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         2.00                      12A9   
...........................................................GAATGGCGCCACTAGGGTTGTa..................     40293_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         2.00                        21   
...........................................................GAATGGCGCCACTAGGGTTGTt..................      8262_1_0_0_0_0_0       MATURE            1         0.70            1         1.09            0         0.00                        21   
...........................................................GAATGGCGCCACTAGGGTTGTG..................     34106_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         2.00                        22   
..........................................................TGAATGGCGCCACTAGGtTTGT...................     20263_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         2.00                      17T4   
...........................................................GAATGGCGCCACTAGGGTTcTG..................     41061_1_0_0_0_0_0       MATURE            1         0.70            1         1.09            0         0.00                      19C2   
...........................................................GAATGGCGCCACTAGGGcTGTt..................     34668_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         2.00                      17C3   
..........................................................TGAATGGCGCCACTAGGaTTGT...................     41761_1_0_0_0_0_0       MATURE            1         0.70            1         1.09            0         0.00                      17A4   
...........................................................GAATGGCGCCACTAGGGTTGTc..................      9418_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         2.00                        21   
...........................................................GAATGGCGCCACTAGGGaTGTa..................     12890_1_0_0_0_0_0       MATURE            1         0.70            1         1.09            0         0.00                      17A3   
...........................................................GAATGGCGCCACTAGGaTTGTG..................     44218_1_0_0_0_0_0       MATURE            1         0.70            1         1.09            0         0.00                      16A5   
..........................................................TGAATGGCGCCACTAGGGTTGT...................     18624_1_0_0_0_0_0       MATURE            1         0.70            1         1.09            0         0.00                        22   
...........................................................GAATGGCGCCACTAGGGTaGTGt.................      4707_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         2.00                      18A3   
..........................................................TGAATGGCGCCACTAGtGTTGT...................      1258_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         2.00                      16T5   
.........................................................TTGAATGGCGCCACTAGGGTTGTGt.................      8463_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         2.00                        24   
...........................................................GAATGGCGCCACTAGGGTTaTG..................     39328_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         2.00                      19A2   
...........................................................GAATaGCGCCACTAGGGTTGTGt.................     11896_0_0_0_0_0_1       MATURE            1         0.70            0         0.00            1         2.00                      4A17   
                                                                                                                                         ----------                ----------                ----------   
                                                                                                                                                142                        92                        50                                          
                                                                                                                                                                      (64.79)                   (35.21)                                       




*** OTHER ***
__________________________________________________________________________________________________
AGGAACAGCTATGTACTGCACAACCCTAGGAGGGGGTGCCATTCACATAGAGTATAATTGAATGGCGCCACTAGGGTTGTGCAGTGTACAGCCTACAC REF                  X                    139173543 - 139173640 
                                                            AATGGCGCCACTAGGGTTGTG                  MATURE               X                    139173604 - 139173721 mmu-miR-652          +                    
__________________________________________________________________________________________________

                                                                                              -SEQ-              -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
....................CAACCCTAGGAGGGGGTGCCATTC.......................................................   27565_2_0_0_0_0_1        OTHER            3        21.43            2        28.57            1        14.29                        24   
AGGAACAGCTATGTACTGCA...............................................................................    9112_0_0_0_0_0_2        OTHER            2        14.29            0         0.00            2        28.57                        20   
...................ACAACCCTAGGAGGGGGTGCCATTC.......................................................   38718_2_0_0_0_0_0        OTHER            2        14.29            2        28.57            0         0.00                        25   
....................CAACCCTAGGAGGGGGTGCCATa........................................................   36576_1_0_0_0_0_1        OTHER            2        14.29            1        14.29            1        14.29                        22   
..................CACAACCCTAGGAGGGGGTGCCAT.........................................................    4694_0_0_0_0_0_1        OTHER            1         7.14            0         0.00            1        14.29                        24   
.....................AACCCTAGGAGGGGGTaCCATT........................................................    4075_1_0_0_0_0_0        OTHER            1         7.14            1        14.29            0         0.00                      16A5   
.GGAACAGCTATGTACTGCA...............................................................................   24984_0_0_0_0_0_1        OTHER            1         7.14            0         0.00            1        14.29                        19   
...................ACAACCCTAGGAGGGGGTGCCATTt.......................................................   31845_1_0_0_0_0_0        OTHER            1         7.14            1        14.29            0         0.00                        24   
....................CAACCCTAGGAGGGGGTGCCATTCA......................................................   13015_0_0_0_0_0_1        OTHER            1         7.14            0         0.00            1        14.29                        25   
                                                                                                                                       ----------                ----------                ----------   
                                                                                                                                               14                         7                         7                                          
                                                                                                                                                                    (50.00)                   (50.00)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
         MATURE              92              50             142          91.03%
          OTHER               7               7              14           8.97%
                     ----------      ----------      ----------                
                             99              57             156                



[END]
