[BEGIN]
REFERENCE HAIRPIN
***********************************************************************************************************************
ID : mmu-mir-652
DESCRIPTION : mmu-mir-652 MI0004965 Mus musculus miR-652 stem-loop
CHROMOSOME : X
SPAN : 139173543 - 139173640
LENGTH : 98
SEQUENCE : AGGAACAGCTATGTACTGCACAACCCTAGGAGGGGGTGCCATTCACATAGAGTATAATTGAATGGCGCCACTAGGGTTGTGCAGTGTACAGCCTACAC
OVERHANG THRESHOLD : 40%
***********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-652
ACCID : MI0004965
PARENT : mmu-mir-652
CHROMOSOME : X
START : 139173543
STOP : 139173640
OFFSET : 61..81
SEQUENCE : AATGGCGCCACTAGGGTTGTG
STRAND : +
******************************
*** MATURE ***
__________________________________________________________________________________________________
AGGAACAGCTATGTACTGCACAACCCTAGGAGGGGGTGCCATTCACATAGAGTATAATTGAATGGCGCCACTAGGGTTGTGCAGTGTACAGCCTACAC REF X 139173543 - 139173640
AATGGCGCCACTAGGGTTGTG MATURE X 139173604 - 139173721 mmu-miR-652 +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...........................................................GAATGGCGCCACTAGGGTTGTGt................. 34673_27_0_0_0_0_14 MATURE 41 28.87 27 29.35 14 28.00 22
...........................................................GAATGGCGCCACTAGGGTTaTGt................. 40299_16_0_0_0_0_8 MATURE 24 16.90 16 17.39 8 16.00 19A2
...........................................................GAATGGCGCCACTAGGGcTGTGt................. 35510_11_0_0_0_0_3 MATURE 14 9.86 11 11.96 3 6.00 17C4
...........................................................GAATGGCGCCACTAGGGaTGTGt................. 35376_5_0_0_0_0_3 MATURE 8 5.63 5 5.43 3 6.00 17A4
...........................................................GAATGGCGCCACTAGaGTTGT................... 17794_4_0_0_0_0_1 MATURE 5 3.52 4 4.35 1 2.00 15A5
..........................................................TGAATGGCGCCACTAGGGcTGTGt................. 37097_3_0_0_0_0_1 MATURE 4 2.82 3 3.26 1 2.00 18C4
...........................................................GAATGGCGCCACTAGGGTTGTGC................. 16393_2_0_0_0_0_1 MATURE 3 2.11 2 2.17 1 2.00 23
...........................................................GAATGGCGCCACTAGGGTTGTGCt................ 32881_2_0_0_0_0_1 MATURE 3 2.11 2 2.17 1 2.00 23
..........................................................TGAATGGCGCCACTAGGGTTGTGt................. 28626_2_0_0_0_0_1 MATURE 3 2.11 2 2.17 1 2.00 23
...........................................................GAATGGCGCCACTAGGGTTGTGa................. 3737_2_0_0_0_0_1 MATURE 3 2.11 2 2.17 1 2.00 22
..........................................................TGAATGGCGCCACTAGGGaTGTGt................. 19115_2_0_0_0_0_1 MATURE 3 2.11 2 2.17 1 2.00 18A4
...........................................................GAATGGCGCCACTAGGGTTtTGt................. 34345_2_0_0_0_0_1 MATURE 3 2.11 2 2.17 1 2.00 19T2
...........................................................GAATGGCGCCACTAGGaTTGT................... 29975_1_0_0_0_0_1 MATURE 2 1.41 1 1.09 1 2.00 16A4
.............................................................ATGGCGCCACTAGGGTTGTGt................. 5150_2_0_0_0_0_0 MATURE 2 1.41 2 2.17 0 0.00 20
...........................................................GAATGGCGCCACTAGGGaTGTGC................. 833_1_0_0_0_0_1 MATURE 2 1.41 1 1.09 1 2.00 17A5
...........................................................GAATGGgGCCACTAGGGTTGTGt................. 195_2_0_0_0_0_0 MATURE 2 1.41 2 2.17 0 0.00 6G15
..........................................................TGAATGGCGCCACTAGGaTTGTc.................. 14339_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 2.00 17A4
...........................................................GAATGGCGCCACTAGGGTTGT................... 36506_1_0_0_0_0_0 MATURE 1 0.70 1 1.09 0 0.00 21
...........................................................GAATGGCGCCACTAGGGTTaTGC................. 11600_1_0_0_0_0_0 MATURE 1 0.70 1 1.09 0 0.00 19A3
...........................................................GAATGGCGCCACaAGGGTTGTGt................. 27795_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 2.00 12A9
...........................................................GAATGGCGCCACTAGGGTTGTa.................. 40293_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 2.00 21
...........................................................GAATGGCGCCACTAGGGTTGTt.................. 8262_1_0_0_0_0_0 MATURE 1 0.70 1 1.09 0 0.00 21
...........................................................GAATGGCGCCACTAGGGTTGTG.................. 34106_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 2.00 22
..........................................................TGAATGGCGCCACTAGGtTTGT................... 20263_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 2.00 17T4
...........................................................GAATGGCGCCACTAGGGTTcTG.................. 41061_1_0_0_0_0_0 MATURE 1 0.70 1 1.09 0 0.00 19C2
...........................................................GAATGGCGCCACTAGGGcTGTt.................. 34668_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 2.00 17C3
..........................................................TGAATGGCGCCACTAGGaTTGT................... 41761_1_0_0_0_0_0 MATURE 1 0.70 1 1.09 0 0.00 17A4
...........................................................GAATGGCGCCACTAGGGTTGTc.................. 9418_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 2.00 21
...........................................................GAATGGCGCCACTAGGGaTGTa.................. 12890_1_0_0_0_0_0 MATURE 1 0.70 1 1.09 0 0.00 17A3
...........................................................GAATGGCGCCACTAGGaTTGTG.................. 44218_1_0_0_0_0_0 MATURE 1 0.70 1 1.09 0 0.00 16A5
..........................................................TGAATGGCGCCACTAGGGTTGT................... 18624_1_0_0_0_0_0 MATURE 1 0.70 1 1.09 0 0.00 22
...........................................................GAATGGCGCCACTAGGGTaGTGt................. 4707_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 2.00 18A3
..........................................................TGAATGGCGCCACTAGtGTTGT................... 1258_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 2.00 16T5
.........................................................TTGAATGGCGCCACTAGGGTTGTGt................. 8463_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 2.00 24
...........................................................GAATGGCGCCACTAGGGTTaTG.................. 39328_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 2.00 19A2
...........................................................GAATaGCGCCACTAGGGTTGTGt................. 11896_0_0_0_0_0_1 MATURE 1 0.70 0 0.00 1 2.00 4A17
---------- ---------- ----------
142 92 50
(64.79) (35.21)
*** OTHER ***
__________________________________________________________________________________________________
AGGAACAGCTATGTACTGCACAACCCTAGGAGGGGGTGCCATTCACATAGAGTATAATTGAATGGCGCCACTAGGGTTGTGCAGTGTACAGCCTACAC REF X 139173543 - 139173640
AATGGCGCCACTAGGGTTGTG MATURE X 139173604 - 139173721 mmu-miR-652 +
__________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....................CAACCCTAGGAGGGGGTGCCATTC....................................................... 27565_2_0_0_0_0_1 OTHER 3 21.43 2 28.57 1 14.29 24
AGGAACAGCTATGTACTGCA............................................................................... 9112_0_0_0_0_0_2 OTHER 2 14.29 0 0.00 2 28.57 20
...................ACAACCCTAGGAGGGGGTGCCATTC....................................................... 38718_2_0_0_0_0_0 OTHER 2 14.29 2 28.57 0 0.00 25
....................CAACCCTAGGAGGGGGTGCCATa........................................................ 36576_1_0_0_0_0_1 OTHER 2 14.29 1 14.29 1 14.29 22
..................CACAACCCTAGGAGGGGGTGCCAT......................................................... 4694_0_0_0_0_0_1 OTHER 1 7.14 0 0.00 1 14.29 24
.....................AACCCTAGGAGGGGGTaCCATT........................................................ 4075_1_0_0_0_0_0 OTHER 1 7.14 1 14.29 0 0.00 16A5
.GGAACAGCTATGTACTGCA............................................................................... 24984_0_0_0_0_0_1 OTHER 1 7.14 0 0.00 1 14.29 19
...................ACAACCCTAGGAGGGGGTGCCATTt....................................................... 31845_1_0_0_0_0_0 OTHER 1 7.14 1 14.29 0 0.00 24
....................CAACCCTAGGAGGGGGTGCCATTCA...................................................... 13015_0_0_0_0_0_1 OTHER 1 7.14 0 0.00 1 14.29 25
---------- ---------- ----------
14 7 7
(50.00) (50.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 92 50 142 91.03%
OTHER 7 7 14 8.97%
---------- ---------- ----------
99 57 156
[END]