[BEGIN]
REFERENCE HAIRPIN
***************************************************************************************************
ID : mmu-mir-574
DESCRIPTION : mmu-mir-574 MI0005518 Mus musculus miR-574 stem-loop
CHROMOSOME : 5
SPAN : 65361557 - 65361634
LENGTH : 78
SEQUENCE : TGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACG
OVERHANG THRESHOLD : 40%
***************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-574-3p
ACCID : MI0005518
PARENT : mmu-mir-574
CHROMOSOME : 5
START : 65361557
STOP : 65361634
OFFSET : 47..68
SEQUENCE : CACGCTCATGCACACACCCACA
STRAND : +
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-574-5p
ACCID : MI0005518
PARENT : mmu-mir-574
CHROMOSOME : 5
START : 65361557
STOP : 65361634
OFFSET : 11..33
SEQUENCE : TGAGTGTGTGTGTGTGAGTGTGT
STRAND : +
******************************
*** MATURE-3P ***
______________________________________________________________________________
TGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACG REF 5 65361557 - 65361634
CACGCTCATGCACACACCCACA MATURE-3P 5 65361604 - 65361702 mmu-miR-574-3p +
TGAGTGTGTGTGTGTGAGTGTGT MATURE-5P 5 65361568 - 65361667 mmu-miR-574-5p +
______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..............................................CACGCTCATGCACACACCCACA........... 35806_8_0_0_0_0_7 MATURE-3P 15 23.44 8 23.53 7 23.33 22
..............................................CACGCTCATGCACACACCCAC............ 34315_6_0_0_0_0_5 MATURE-3P 11 17.19 6 17.65 5 16.67 21
..............................................CACGCTCATGCACACACCCAt............ 34152_3_0_0_0_0_4 MATURE-3P 7 10.94 3 8.82 4 13.33 20
..............................................CACGCTCATGCACACACCCACt........... 30949_2_0_0_0_0_4 MATURE-3P 6 9.38 2 5.88 4 13.33 21
..............................................CACGCTCATGCACACACCCACAa.......... 15020_2_0_0_0_0_1 MATURE-3P 3 4.69 2 5.88 1 3.33 22
..............................................CACGCTCATGCACACAtCCACA........... 22368_1_0_0_0_0_2 MATURE-3P 3 4.69 1 2.94 2 6.67 16T5
..............................................CACGCTCATGCACACACCCACAt.......... 26029_3_0_0_0_0_0 MATURE-3P 3 4.69 3 8.82 0 0.00 22
..............................................CACGCTCATGCACACtCCCAC............ 38745_1_0_0_0_0_2 MATURE-3P 3 4.69 1 2.94 2 6.67 15T5
..............................................CACGCTCATGCACACACCC.............. 27240_1_0_0_0_0_0 MATURE-3P 1 1.56 1 2.94 0 0.00 19
..............................................CACGCTCATGCACACACCCACACt......... 23179_1_0_0_0_0_0 MATURE-3P 1 1.56 1 2.94 0 0.00 23
...........................................GTgCACGCTCATGCACACACCCACt........... 20034_1_0_0_0_0_0 MATURE-3P 1 1.56 1 2.94 0 0.00 2G21
..............................................CACGCTCATGCACACACCCACAC.......... 3951_0_0_0_0_0_1 MATURE-3P 1 1.56 0 0.00 1 3.33 23
..............................................CACGCTCATGCACACAaCCACt........... 42619_0_0_0_0_0_1 MATURE-3P 1 1.56 0 0.00 1 3.33 16A4
..............................................CACGCTCATGCACACACCCcCAt.......... 22888_1_0_0_0_0_0 MATURE-3P 1 1.56 1 2.94 0 0.00 19C2
...............................................ACGCTCATGCACACACCCACA........... 14085_0_0_0_0_0_1 MATURE-3P 1 1.56 0 0.00 1 3.33 21
..............................................CACGCTCATGCACACACCaACAa.......... 15165_1_0_0_0_0_0 MATURE-3P 1 1.56 1 2.94 0 0.00 18A3
..............................................CACGCTCATGCACACAtCCACt........... 35567_1_0_0_0_0_0 MATURE-3P 1 1.56 1 2.94 0 0.00 16T4
..............................................CACGCTCATGCACACACCgACA........... 15985_0_0_0_0_0_1 MATURE-3P 1 1.56 0 0.00 1 3.33 18G3
..........................................AGTCCACGCTCATGCACACACCCAC............ 34907_0_0_0_0_0_1 MATURE-3P 1 1.56 0 0.00 1 3.33 25
..............................................CACGCTCATGCACACACCgAC............ 9093_1_0_0_0_0_0 MATURE-3P 1 1.56 1 2.94 0 0.00 18G2
..............................................CACGCTCATGCACACAaCCACA........... 14026_1_0_0_0_0_0 MATURE-3P 1 1.56 1 2.94 0 0.00 16A5
---------- ---------- ----------
64 34 30
(53.12) (46.88)
*** MATURE-5P ***
______________________________________________________________________________
TGCGGGCGTGTGAGTGTGTGTGTGTGAGTGTGTGTCGCTCCAAGTCCACGCTCATGCACACACCCACACGCCCGCACG REF 5 65361557 - 65361634
CACGCTCATGCACACACCCACA MATURE-3P 5 65361604 - 65361702 mmu-miR-574-3p +
TGAGTGTGTGTGTGTGAGTGTGT MATURE-5P 5 65361568 - 65361667 mmu-miR-574-5p +
______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........TGTGAGTGTGTGTGTGTGAGTG................................................. 42676_1_0_0_0_0_0 MATURE-5P 1 33.33 1 33.33 0 0 22
........TGTGAGTGTGTGTGTGTGAGTGT................................................ 37737_1_0_0_0_0_0 MATURE-5P 1 33.33 1 33.33 0 0 23
.............GTGTGTGTGTGTGAGTGTG............................................... 5318_1_0_0_0_0_0 MATURE-5P 1 33.33 1 33.33 0 0 19
---------- ---------- ----------
3 3 0
(100.00) (0.00)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 34 30 64 95.52%
MATURE-5P 3 0 3 4.48%
---------- ---------- ----------
37 30 67
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