[BEGIN]
REFERENCE HAIRPIN
**********************************************************************************************************
ID : mmu-mir-542
DESCRIPTION : mmu-mir-542 MI0003522 Mus musculus miR-542 stem-loop
CHROMOSOME : X
SPAN : 50402580 - 50402664
LENGTH : 85
SEQUENCE : GGATCTCAGACGTCTCGGGGATCATCATGTCACGAGATACCACTGTGCCCTTGTGACAGATTGATAACTGAAAGGTCTGGGAGCC
OVERHANG THRESHOLD : 40%
**********************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-542-3p
ACCID : MI0003522
PARENT : mmu-mir-542
CHROMOSOME : X
START : 50402580
STOP : 50402664
OFFSET : 52..73
SEQUENCE : TGTGACAGATTGATAACTGAAA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-542-5p
ACCID : MI0003522
PARENT : mmu-mir-542
CHROMOSOME : X
START : 50402580
STOP : 50402664
OFFSET : 14..35
SEQUENCE : CTCGGGGATCATCATGTCACGA
STRAND : -
******************************
*** MATURE-5P ***
_____________________________________________________________________________________
GGATCTCAGACGTCTCGGGGATCATCATGTCACGAGATACCACTGTGCCCTTGTGACAGATTGATAACTGAAAGGTCTGGGAGCC REF X 50402580 - 50402664
TGTGACAGATTGATAACTGAAA MATURE-3P X 50402632 - 50402737 mmu-miR-542-3p -
CTCGGGGATCATCATGTCACGA MATURE-5P X 50402594 - 50402699 mmu-miR-542-5p -
_____________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.............CTCGGGGATCATCATGTCACGAGt................................................. 6830_0_0_0_0_0_1 MATURE-5P 1 33.33 0 0.00 1 100.00 23
.............CTCGGGGATCATCATGTCACGAa.................................................. 31579_1_0_0_0_0_0 MATURE-5P 1 33.33 1 50.00 0 0.00 22
.............CTCGGGGATCATCATGTCgCGAa.................................................. 7891_1_0_0_0_0_0 MATURE-5P 1 33.33 1 50.00 0 0.00 18G3
---------- ---------- ----------
3 2 1
(66.67) (33.33)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-5P 2 1 3 100.00%
---------- ---------- ----------
2 1 3
[END]