[BEGIN]
REFERENCE HAIRPIN
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ID : mmu-mir-539
DESCRIPTION : mmu-mir-539 MI0003520 Mus musculus miR-539 stem-loop
CHROMOSOME : 12
SPAN : 110966339 - 110966412
LENGTH : 74
SEQUENCE : TACTTGAGGAGAAATTATCCTTGGTGTGTTGGCTCTTTTGGATGAATCATACAAGGATAATTTCTTTTTGAGTA
OVERHANG THRESHOLD : 40%
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TARGET
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CATEGORY : MATURE
ID : mmu-miR-539
ACCID : MI0003520
PARENT : mmu-mir-539
CHROMOSOME : 12
START : 110966339
STOP : 110966412
OFFSET : 8..29
SEQUENCE : GGAGAAATTATCCTTGGTGTGT
STRAND : +
******************************
*** MATURE ***
__________________________________________________________________________
TACTTGAGGAGAAATTATCCTTGGTGTGTTGGCTCTTTTGGATGAATCATACAAGGATAATTTCTTTTTGAGTA REF 12 110966339 - 110966412
GGAGAAATTATCCTTGGTGTGT MATURE 12 110966347 - 110966441 mmu-miR-539 +
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-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........GAGAAATTATCCTTGGTGTGT.............................................. 26509_2_0_0_0_0_9 MATURE 11 50.00 2 40.00 9 52.94 21
.......GGAGAAATTATCCTTGGTGTGT.............................................. 43646_0_0_0_0_0_3 MATURE 3 13.64 0 0.00 3 17.65 22
..........GAAATTATCCTTGGTGTGT.............................................. 17727_1_0_0_0_0_2 MATURE 3 13.64 1 20.00 2 11.76 19
.........AGAAATTATCCTTGGTGTGT.............................................. 39612_1_0_0_0_0_1 MATURE 2 9.09 1 20.00 1 5.88 20
..........GAAATTATCCTTGGTGTGTa............................................. 25265_1_0_0_0_0_1 MATURE 2 9.09 1 20.00 1 5.88 19
.......GGAGAAATTATCCTTGGTaTGT.............................................. 13107_0_0_0_0_0_1 MATURE 1 4.55 0 0.00 1 5.88 18A3
---------- ---------- ----------
22 5 17
(22.73) (77.27)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 5 17 22 100.00%
---------- ---------- ----------
5 17 22
[END]