[BEGIN]

REFERENCE HAIRPIN
*********************************************************************************************************************
ID                 : mmu-mir-532
DESCRIPTION        : mmu-mir-532 MI0003206 Mus musculus miR-532 stem-loop
CHROMOSOME         : X
SPAN               : 6825528 - 6825623
LENGTH             : 96
SEQUENCE           : CAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTC
OVERHANG THRESHOLD : 40%
*********************************************************************************************************************


TARGET
******************************
CATEGORY   : MATURE-3P
ID         : mmu-miR-532-3p
ACCID      : MI0003206
PARENT     : mmu-mir-532
CHROMOSOME : X
START      : 6825528
STOP       : 6825623
OFFSET     : 58..79
SEQUENCE   : CCTCCCACACCCAAGGCTTGCA
STRAND     : -
******************************


TARGET
******************************
CATEGORY   : MATURE-5P
ID         : mmu-miR-532-5p
ACCID      : MI0003206
PARENT     : mmu-mir-532
CHROMOSOME : X
START      : 6825528
STOP       : 6825623
OFFSET     : 21..42
SEQUENCE   : CATGCCTTGAGTGTAGGACCGT
STRAND     : -
******************************



*** MATURE-3P ***
________________________________________________________________________________________________
CAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTC REF                  X                    6825528 - 6825623    
                                                         CCTCCCACACCCAAGGCTTGCA                  MATURE-3P            X                    6825586 - 6825702    mmu-miR-532-3p       -                    
                    CATGCCTTGAGTGTAGGACCGT                                                       MATURE-5P            X                    6825549 - 6825665    mmu-miR-532-5p       -                    
________________________________________________________________________________________________

                                                                                            -SEQ-                -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
.........................................................CCTCCCACACCCAAGGCTTGCAt.................   33161_20_0_0_0_0_11    MATURE-3P           31        19.62           20        30.30           11        11.96                        22   
..........................................................CTCCCACACCCAAGGCTTGCAt.................    41036_7_0_0_0_0_17    MATURE-3P           24        15.19            7        10.61           17        18.48                        21   
..........................................................CTCCCACACCCAAGGCTTGCA..................    43948_10_0_0_0_0_8    MATURE-3P           18        11.39           10        15.15            8         8.70                        21   
..........................................................CTCCCACACCCAAGGCaTGCA..................     36983_6_0_0_0_0_5    MATURE-3P           11         6.96            6         9.09            5         5.43                      16A4   
.......................................................ACaCTCCCACACCCAAGGCTTGCAt.................     42884_2_0_0_0_0_7    MATURE-3P            9         5.70            2         3.03            7         7.61                      2A21   
..........................................................CTCCCACACCCAAGGCTTaCA..................     40089_5_0_0_0_0_3    MATURE-3P            8         5.06            5         7.58            3         3.26                      18A2   
..........................................................CTCCCACACCCAAGGCTTGCt..................     40046_1_0_0_0_0_4    MATURE-3P            5         3.16            1         1.52            4         4.35                        20   
............................................................CCCACACCCAAGGCTTGCA..................     23013_0_0_0_0_0_3    MATURE-3P            3         1.90            0         0.00            3         3.26                        19   
.........................................................CCTCCCACACCCAAGGCTTGCAc.................     20827_1_0_0_0_0_2    MATURE-3P            3         1.90            1         1.52            2         2.17                        22   
..........................................................CTCCCACACCCAAGGCTaGCA..................     35512_0_0_0_0_0_3    MATURE-3P            3         1.90            0         0.00            3         3.26                      17A3   
........................................................CCCTCCCACACCCAAGGCTTGCAa.................     39369_2_0_0_0_0_1    MATURE-3P            3         1.90            2         3.03            1         1.09                        23   
.........................................................CCTCCCACACCCAAGGCTTaCAa.................       759_1_0_0_0_0_1    MATURE-3P            2         1.27            1         1.52            1         1.09                      19A2   
.........................................................CCTCCCACACCCAAGaCTTGC...................     16167_0_0_0_0_0_2    MATURE-3P            2         1.27            0         0.00            2         2.17                      15A5   
..........................................................CTCCCACACCCAAGGCTTGCAc.................     16252_2_0_0_0_0_0    MATURE-3P            2         1.27            2         3.03            0         0.00                        21   
..........................................................CTCCCACACCCAAGGCTcGCA..................     36769_0_0_0_0_0_2    MATURE-3P            2         1.27            0         0.00            2         2.17                      17C3   
..........................................................CTCCCACACCCAAGGCaTGCAa.................     43686_0_0_0_0_0_2    MATURE-3P            2         1.27            0         0.00            2         2.17                      16A4   
..........................................................CTCCCACACCCAAGGaTTGCA..................     31088_0_0_0_0_0_2    MATURE-3P            2         1.27            0         0.00            2         2.17                      15A5   
.........................................................CCTCCCACACCCAAGGCTTGCAa.................     29139_0_0_0_0_0_2    MATURE-3P            2         1.27            0         0.00            2         2.17                        22   
........................................................CCCTCCCACACCCAAGGCTcGCAa.................     16706_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                      19C3   
.........................................................CCTCCCACACCCAAGGCTcGCAa.................     14946_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                      18C3   
.......................................................ACaCTCCCACACCCAAGGCTTGCAa.................     10777_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                      2A21   
..........................................................CTCCCACACCCAAGGCcTGCAa.................     25024_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                      16C4   
.........................................................CCTCCCACACCCAAGGCaTGCAa.................     33613_1_0_0_0_0_0    MATURE-3P            1         0.63            1         1.52            0         0.00                      17A4   
..........................................................CTCtCACACCCAAGGCTTGCAt.................      9891_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                      3T17   
..........................................................CTCCCACACCCAAGGCTTGCAaGA...............     18692_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                      21A2   
..........................................................CTCCCACACCCAAGGCTaGCAGt................     20333_1_0_0_0_0_0    MATURE-3P            1         0.63            1         1.52            0         0.00                      17A4   
.......................................................ACCCTCCCACACCCAAGGCTTGCAt.................     17344_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                        24   
.....................................................TTAgCCTCCCACACCCAAGGCTTGC...................     28517_1_0_0_0_0_0    MATURE-3P            1         0.63            1         1.52            0         0.00                      3G21   
.........................................................CCTCCCACACCCAAGGCTTGt...................     20415_1_0_0_0_0_0    MATURE-3P            1         0.63            1         1.52            0         0.00                        20   
.......................................................ACgCTCCCACACCCAAGGCTTGCAt.................     32717_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                      2G21   
........................................................CCCTCCCACACCCAAGGCTTcCAt.................     35157_1_0_0_0_0_0    MATURE-3P            1         0.63            1         1.52            0         0.00                      20C2   
........................................................CCCTCCCACACCCAAGGCTTGCAt.................     28446_1_0_0_0_0_0    MATURE-3P            1         0.63            1         1.52            0         0.00                        23   
..........................................................CTCCCACACCCAAGGCTTaCAc.................      6198_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                      18A2   
..........................................................CTCaCACACCCAAGGCTTGCAa.................     10671_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                      3A17   
..........................................................CTCCCACACCCAAGGCTTtCAt.................     33990_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                      18T2   
.........................................................CCTCCCACACCCAAGGCTTaCAc.................     27992_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                      19A2   
..........................................................CTCCCACACCCAAGGCcTGCAG.................     27512_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                      16C5   
...........................................................TCCCACACCCAAGGCTTGCA..................     13438_1_0_0_0_0_0    MATURE-3P            1         0.63            1         1.52            0         0.00                        20   
......................................................TACCCTCCCACACCCAAGGCTTGCc..................     13275_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                        24   
........................................................CCCTCCCACACCCAAGGCcTGCAt.................     13922_1_0_0_0_0_0    MATURE-3P            1         0.63            1         1.52            0         0.00                      18C4   
..........................................................CTCCCACACCCAAGGCTTGCAa.................     41518_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                        21   
............................................................CCCACACCCAAGGCTTGCAc.................     40444_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                        19   
.........................................................CCcCCCACACCCAAGGCTTGCt..................     18493_0_0_0_0_0_1    MATURE-3P            1         0.63            0         0.00            1         1.09                      2C18   
........................................................CCCTCCCACACCCAAGGCTaGCAa.................      7968_1_0_0_0_0_0    MATURE-3P            1         0.63            1         1.52            0         0.00                      19A3   
                                                                                                                                       ----------                ----------                ----------   
                                                                                                                                              158                        66                        92                                          
                                                                                                                                                                    (41.77)                   (58.23)                                       




*** MATURE-5P ***
________________________________________________________________________________________________
CAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTC REF                  X                    6825528 - 6825623    
                                                         CCTCCCACACCCAAGGCTTGCA                  MATURE-3P            X                    6825586 - 6825702    mmu-miR-532-3p       -                    
                    CATGCCTTGAGTGTAGGACCGT                                                       MATURE-5P            X                    6825549 - 6825665    mmu-miR-532-5p       -                    
________________________________________________________________________________________________

                                                                                            -SEQ-                 -READ-        -CAT-      -TOTAL-       -TOT%-       -REST-      -REST%-        -ACT-       -ACT%-        -VAR-   -MISMATCH-   
....................CATGCCTTGAGTGTAGaACCGT.......................................................   44217_92_0_0_0_0_154    MATURE-5P          246        25.00           92        23.35          154        26.10                      16A5   
....................CATGCCTTGAGTGTAGtACCGT.......................................................    42976_49_0_0_0_0_88    MATURE-5P          137        13.92           49        12.44           88        14.92                      16T5   
....................CATGCCTTGAGTGTAGcACCGT.......................................................    43385_32_0_0_0_0_64    MATURE-5P           96         9.76           32         8.12           64        10.85                      16C5   
....................CATGCCTTGAGTGTAGGACCGT.......................................................    42568_26_0_0_0_0_58    MATURE-5P           84         8.54           26         6.60           58         9.83                        22   
....................CATGCCTTGAGTGTAGGACCGTT......................................................    19472_30_0_0_0_0_31    MATURE-5P           61         6.20           30         7.61           31         5.25                        23   
....................CATGCCTTGAGTGTAGGACCGTa......................................................    42532_17_0_0_0_0_29    MATURE-5P           46         4.67           17         4.31           29         4.92                        22   
....................CATGCCTTGAGTGTAGGACCGTTt.....................................................    41661_19_0_0_0_0_15    MATURE-5P           34         3.46           19         4.82           15         2.54                        23   
....................CATGCCTTGAGTGTAGaACCGc.......................................................    34482_12_0_0_0_0_16    MATURE-5P           28         2.85           12         3.05           16         2.71                      16A4   
....................CATGCCTTGAGTGTAGGACCaTT......................................................     43451_6_0_0_0_0_20    MATURE-5P           26         2.64            6         1.52           20         3.39                      20A2   
....................CATGCCTTGAGTGTAGGACCGTTa.....................................................     36737_14_0_0_0_0_5    MATURE-5P           19         1.93           14         3.55            5         0.85                        23   
....................CATGCCTTGAGTGTAGGACCGa.......................................................     38282_10_0_0_0_0_8    MATURE-5P           18         1.83           10         2.54            8         1.36                        21   
....................CATGCCTTGAGTGTAGGACCaTTt.....................................................      31819_8_0_0_0_0_7    MATURE-5P           15         1.52            8         2.03            7         1.19                      20A2   
....................CATGCCTTGAGTGTAGaACCGa.......................................................      42968_7_0_0_0_0_4    MATURE-5P           11         1.12            7         1.78            4         0.68                      16A4   
....................CATGCCTTGAGTGTAGGtCCGT.......................................................      23488_4_0_0_0_0_7    MATURE-5P           11         1.12            4         1.02            7         1.19                      17T4   
.....................ATGCCTTGAGTGTAGGACCaTT......................................................      21429_5_0_0_0_0_5    MATURE-5P           10         1.02            5         1.27            5         0.85                      19A2   
....................CATGCCTTGAGTGTAGGtCCGTT......................................................      26027_5_0_0_0_0_5    MATURE-5P           10         1.02            5         1.27            5         0.85                      17T5   
....................CATGCCTTGAGTGTAGaACCG........................................................      34124_4_0_0_0_0_5    MATURE-5P            9         0.91            4         1.02            5         0.85                      16A4   
....................CATGCCTTGAGTGTAGGACCGTc......................................................      19583_4_0_0_0_0_4    MATURE-5P            8         0.81            4         1.02            4         0.68                        22   
....................CATGCCTTGAGTGTAGtACCGa.......................................................      38828_1_0_0_0_0_7    MATURE-5P            8         0.81            1         0.25            7         1.19                      16T4   
....................CATGCCTTGAGTGTAaGACCG........................................................      33485_4_0_0_0_0_3    MATURE-5P            7         0.71            4         1.02            3         0.51                      15A5   
....................CATGCCTTGAGTGTAGtACCGc.......................................................      26851_1_0_0_0_0_5    MATURE-5P            6         0.61            1         0.25            5         0.85                      16T4   
....................CATGCCTTGAGTGTAGGACCaTTa.....................................................       8991_3_0_0_0_0_3    MATURE-5P            6         0.61            3         0.76            3         0.51                      20A2   
....................CATGCCTTGAGTGTAGGAtCGT.......................................................      24166_3_0_0_0_0_2    MATURE-5P            5         0.51            3         0.76            2         0.34                      18T3   
....................CATGCCTTGAGTGTAGGACCcTT......................................................      39846_0_0_0_0_0_5    MATURE-5P            5         0.51            0         0.00            5         0.85                      20C2   
....................CATGCCTTGAGTGTAGGACCG........................................................      28326_2_0_0_0_0_3    MATURE-5P            5         0.51            2         0.51            3         0.51                        21   
....................CATGCCTTGAGTGTAGGcCCGTa......................................................      32964_1_0_0_0_0_4    MATURE-5P            5         0.51            1         0.25            4         0.68                      17C4   
....................CATGCCTTGAGTGTAGGAaCGT.......................................................      38951_1_0_0_0_0_3    MATURE-5P            4         0.41            1         0.25            3         0.51                      18A3   
....................CATGCCTTGAGTGTAGaACCGg.......................................................      39490_2_0_0_0_0_2    MATURE-5P            4         0.41            2         0.51            2         0.34                      16A4   
....................CATGCCTTGAGTGTAGcACCGa.......................................................      23553_0_0_0_0_0_4    MATURE-5P            4         0.41            0         0.00            4         0.68                      16C4   
....................CATGCCTTGAGTGTAGtACCGg.......................................................      41276_3_0_0_0_0_1    MATURE-5P            4         0.41            3         0.76            1         0.17                      16T4   
....................CATGCCTTGAGTGTAGGACCGTg......................................................      24640_1_0_0_0_0_2    MATURE-5P            3         0.30            1         0.25            2         0.34                        22   
....................CATGCCTTGAGTGTAGGcCCGT.......................................................      12677_1_0_0_0_0_2    MATURE-5P            3         0.30            1         0.25            2         0.34                      17C4   
....................CATGCCTTGAGTGTAGGcCCGTT......................................................      10769_2_0_0_0_0_1    MATURE-5P            3         0.30            2         0.51            1         0.17                      17C5   
....................CATGCCTTGAGTGTAGGACaGT.......................................................      20087_0_0_0_0_0_3    MATURE-5P            3         0.30            0         0.00            3         0.51                      19A2   
....................CATGCCTTGAGTGTAGGACaGTT......................................................      25998_1_0_0_0_0_1    MATURE-5P            2         0.20            1         0.25            1         0.17                      19A3   
.....................ATGCCTTGAGTGTAGGACCcTT......................................................      19283_1_0_0_0_0_1    MATURE-5P            2         0.20            1         0.25            1         0.17                      19C2   
.....................ATGCCTTGAGTGTAGGACCGTTt.....................................................      35073_2_0_0_0_0_0    MATURE-5P            2         0.20            2         0.51            0         0.00                        22   
.....................ATGCCTTGAGTGTAGGACCGTa......................................................      42450_1_0_0_0_0_1    MATURE-5P            2         0.20            1         0.25            1         0.17                        21   
....................CATGCCTTGAGTGTAGGACCGc.......................................................      34445_1_0_0_0_0_1    MATURE-5P            2         0.20            1         0.25            1         0.17                        21   
.....................ATGCCTTGAGTGTAGGACCaTTt.....................................................      40566_2_0_0_0_0_0    MATURE-5P            2         0.20            2         0.51            0         0.00                      19A2   
.....................ATGCCTTGAGTGTAGGACCGTT......................................................      24210_2_0_0_0_0_0    MATURE-5P            2         0.20            2         0.51            0         0.00                        22   
....................CATGCCTTGAGTGTAGtACCG........................................................      35816_2_0_0_0_0_0    MATURE-5P            2         0.20            2         0.51            0         0.00                      16T4   
....................CATGCCTTGAGTGTAGGACCGTTG.....................................................       7292_1_0_0_0_0_0    MATURE-5P            1         0.10            1         0.25            0         0.00                        24   
....................CATGCCTTGAGTGTAGGtCCGTa......................................................      27224_0_0_0_0_0_1    MATURE-5P            1         0.10            0         0.00            1         0.17                      17T4   
...................CCATGCCTTGAGTGTAGcACCGT.......................................................       5752_1_0_0_0_0_0    MATURE-5P            1         0.10            1         0.25            0         0.00                      17C5   
....................CATGCCTTGAGTGTAGGACtGT.......................................................      17772_0_0_0_0_0_1    MATURE-5P            1         0.10            0         0.00            1         0.17                      19T2   
....................CATGCCTTGAGTGTAtGACCG........................................................      20722_1_0_0_0_0_0    MATURE-5P            1         0.10            1         0.25            0         0.00                      15T5   
....................CATGCCTTGAGTGTAGGAC..........................................................      40177_0_0_0_0_0_1    MATURE-5P            1         0.10            0         0.00            1         0.17                        19   
....................CATGCCTTGAGTGTAGGtCCGc.......................................................      13749_1_0_0_0_0_0    MATURE-5P            1         0.10            1         0.25            0         0.00                      17T3   
....................CATGCCTTGAGTGTAGcACCG........................................................      13921_1_0_0_0_0_0    MATURE-5P            1         0.10            1         0.25            0         0.00                      16C4   
.....................ATGCCTTGAGTGTAGGACCaTTa.....................................................      22595_1_0_0_0_0_0    MATURE-5P            1         0.10            1         0.25            0         0.00                      19A2   
....................CATGCCTTGAGTGTAGGAgCGT.......................................................      12660_0_0_0_0_0_1    MATURE-5P            1         0.10            0         0.00            1         0.17                      18G3   
......................TGCCTTGAGTGTAGGACCcTTt.....................................................      17275_1_0_0_0_0_0    MATURE-5P            1         0.10            1         0.25            0         0.00                      18C2   
...................CCATGCCTTGAGTGTAGGACCGTc......................................................       9305_0_0_0_0_0_1    MATURE-5P            1         0.10            0         0.00            1         0.17                        23   
....................CATGCCTTGAGTGTAGGAtCGTTt.....................................................      42990_1_0_0_0_0_0    MATURE-5P            1         0.10            1         0.25            0         0.00                      18T4   
....................CATGCCTTGAGTGTAGGcCCGTc......................................................      19868_0_0_0_0_0_1    MATURE-5P            1         0.10            0         0.00            1         0.17                      17C4   
....................CATGCCTTGAGTGTAGGACtGTTt.....................................................      32127_1_0_0_0_0_0    MATURE-5P            1         0.10            1         0.25            0         0.00                      19T3   
....................CATGCCTTGAGTGTAGGACCGg.......................................................      40474_0_0_0_0_0_1    MATURE-5P            1         0.10            0         0.00            1         0.17                        21   
....................CATGCCTTGAGTGTAGGACaGTTt.....................................................      20572_0_0_0_0_0_1    MATURE-5P            1         0.10            0         0.00            1         0.17                      19A3   
....................CATGCCcTGAGTGTAGGACCGTTt.....................................................      18603_0_0_0_0_0_1    MATURE-5P            1         0.10            0         0.00            1         0.17                      6C16   
....................CATGCCTTGAGTGTAGGAgCGTT......................................................      37680_1_0_0_0_0_0    MATURE-5P            1         0.10            1         0.25            0         0.00                      18G4   
..................TCCATGCCTTGAGTGTAGcACCGT.......................................................      17370_1_0_0_0_0_0    MATURE-5P            1         0.10            1         0.25            0         0.00                      18C5   
....................CATGCCTTGAGTGTAGGACCa........................................................      13269_0_0_0_0_0_1    MATURE-5P            1         0.10            0         0.00            1         0.17                        20   
......................TGCCTTGAGTGTAGGACCaTT......................................................       9379_1_0_0_0_0_0    MATURE-5P            1         0.10            1         0.25            0         0.00                      18A2   
....................CATGCCTTGAGTGTAGGACCGTTc.....................................................      30593_0_0_0_0_0_1    MATURE-5P            1         0.10            0         0.00            1         0.17                        23   
....................CATGCCTTGAGTGTAGGAaCGTa......................................................      33526_1_0_0_0_0_0    MATURE-5P            1         0.10            1         0.25            0         0.00                      18A3   
                                                                                                                                        ----------                ----------                ----------   
                                                                                                                                               984                       394                       590                                          
                                                                                                                                                                     (40.04)                   (59.96)                                       




((( SUMMARY )))

          -CAT-          -REST-           -ACT-         -TOTAL-        -TOTAL%-
     ----------      ----------      ----------      ----------      ----------
      MATURE-3P              66              92             158          13.84%
      MATURE-5P             394             590             984          86.16%
                     ----------      ----------      ----------                
                            460             682            1142                



[END]
