[BEGIN]
REFERENCE HAIRPIN
*********************************************************************************************************************
ID : mmu-mir-532
DESCRIPTION : mmu-mir-532 MI0003206 Mus musculus miR-532 stem-loop
CHROMOSOME : X
SPAN : 6825528 - 6825623
LENGTH : 96
SEQUENCE : CAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTC
OVERHANG THRESHOLD : 40%
*********************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE-3P
ID : mmu-miR-532-3p
ACCID : MI0003206
PARENT : mmu-mir-532
CHROMOSOME : X
START : 6825528
STOP : 6825623
OFFSET : 58..79
SEQUENCE : CCTCCCACACCCAAGGCTTGCA
STRAND : -
******************************
TARGET
******************************
CATEGORY : MATURE-5P
ID : mmu-miR-532-5p
ACCID : MI0003206
PARENT : mmu-mir-532
CHROMOSOME : X
START : 6825528
STOP : 6825623
OFFSET : 21..42
SEQUENCE : CATGCCTTGAGTGTAGGACCGT
STRAND : -
******************************
*** MATURE-3P ***
________________________________________________________________________________________________
CAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTC REF X 6825528 - 6825623
CCTCCCACACCCAAGGCTTGCA MATURE-3P X 6825586 - 6825702 mmu-miR-532-3p -
CATGCCTTGAGTGTAGGACCGT MATURE-5P X 6825549 - 6825665 mmu-miR-532-5p -
________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
.........................................................CCTCCCACACCCAAGGCTTGCAt................. 33161_20_0_0_0_0_11 MATURE-3P 31 19.62 20 30.30 11 11.96 22
..........................................................CTCCCACACCCAAGGCTTGCAt................. 41036_7_0_0_0_0_17 MATURE-3P 24 15.19 7 10.61 17 18.48 21
..........................................................CTCCCACACCCAAGGCTTGCA.................. 43948_10_0_0_0_0_8 MATURE-3P 18 11.39 10 15.15 8 8.70 21
..........................................................CTCCCACACCCAAGGCaTGCA.................. 36983_6_0_0_0_0_5 MATURE-3P 11 6.96 6 9.09 5 5.43 16A4
.......................................................ACaCTCCCACACCCAAGGCTTGCAt................. 42884_2_0_0_0_0_7 MATURE-3P 9 5.70 2 3.03 7 7.61 2A21
..........................................................CTCCCACACCCAAGGCTTaCA.................. 40089_5_0_0_0_0_3 MATURE-3P 8 5.06 5 7.58 3 3.26 18A2
..........................................................CTCCCACACCCAAGGCTTGCt.................. 40046_1_0_0_0_0_4 MATURE-3P 5 3.16 1 1.52 4 4.35 20
............................................................CCCACACCCAAGGCTTGCA.................. 23013_0_0_0_0_0_3 MATURE-3P 3 1.90 0 0.00 3 3.26 19
.........................................................CCTCCCACACCCAAGGCTTGCAc................. 20827_1_0_0_0_0_2 MATURE-3P 3 1.90 1 1.52 2 2.17 22
..........................................................CTCCCACACCCAAGGCTaGCA.................. 35512_0_0_0_0_0_3 MATURE-3P 3 1.90 0 0.00 3 3.26 17A3
........................................................CCCTCCCACACCCAAGGCTTGCAa................. 39369_2_0_0_0_0_1 MATURE-3P 3 1.90 2 3.03 1 1.09 23
.........................................................CCTCCCACACCCAAGGCTTaCAa................. 759_1_0_0_0_0_1 MATURE-3P 2 1.27 1 1.52 1 1.09 19A2
.........................................................CCTCCCACACCCAAGaCTTGC................... 16167_0_0_0_0_0_2 MATURE-3P 2 1.27 0 0.00 2 2.17 15A5
..........................................................CTCCCACACCCAAGGCTTGCAc................. 16252_2_0_0_0_0_0 MATURE-3P 2 1.27 2 3.03 0 0.00 21
..........................................................CTCCCACACCCAAGGCTcGCA.................. 36769_0_0_0_0_0_2 MATURE-3P 2 1.27 0 0.00 2 2.17 17C3
..........................................................CTCCCACACCCAAGGCaTGCAa................. 43686_0_0_0_0_0_2 MATURE-3P 2 1.27 0 0.00 2 2.17 16A4
..........................................................CTCCCACACCCAAGGaTTGCA.................. 31088_0_0_0_0_0_2 MATURE-3P 2 1.27 0 0.00 2 2.17 15A5
.........................................................CCTCCCACACCCAAGGCTTGCAa................. 29139_0_0_0_0_0_2 MATURE-3P 2 1.27 0 0.00 2 2.17 22
........................................................CCCTCCCACACCCAAGGCTcGCAa................. 16706_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 19C3
.........................................................CCTCCCACACCCAAGGCTcGCAa................. 14946_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 18C3
.......................................................ACaCTCCCACACCCAAGGCTTGCAa................. 10777_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 2A21
..........................................................CTCCCACACCCAAGGCcTGCAa................. 25024_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 16C4
.........................................................CCTCCCACACCCAAGGCaTGCAa................. 33613_1_0_0_0_0_0 MATURE-3P 1 0.63 1 1.52 0 0.00 17A4
..........................................................CTCtCACACCCAAGGCTTGCAt................. 9891_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 3T17
..........................................................CTCCCACACCCAAGGCTTGCAaGA............... 18692_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 21A2
..........................................................CTCCCACACCCAAGGCTaGCAGt................ 20333_1_0_0_0_0_0 MATURE-3P 1 0.63 1 1.52 0 0.00 17A4
.......................................................ACCCTCCCACACCCAAGGCTTGCAt................. 17344_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 24
.....................................................TTAgCCTCCCACACCCAAGGCTTGC................... 28517_1_0_0_0_0_0 MATURE-3P 1 0.63 1 1.52 0 0.00 3G21
.........................................................CCTCCCACACCCAAGGCTTGt................... 20415_1_0_0_0_0_0 MATURE-3P 1 0.63 1 1.52 0 0.00 20
.......................................................ACgCTCCCACACCCAAGGCTTGCAt................. 32717_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 2G21
........................................................CCCTCCCACACCCAAGGCTTcCAt................. 35157_1_0_0_0_0_0 MATURE-3P 1 0.63 1 1.52 0 0.00 20C2
........................................................CCCTCCCACACCCAAGGCTTGCAt................. 28446_1_0_0_0_0_0 MATURE-3P 1 0.63 1 1.52 0 0.00 23
..........................................................CTCCCACACCCAAGGCTTaCAc................. 6198_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 18A2
..........................................................CTCaCACACCCAAGGCTTGCAa................. 10671_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 3A17
..........................................................CTCCCACACCCAAGGCTTtCAt................. 33990_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 18T2
.........................................................CCTCCCACACCCAAGGCTTaCAc................. 27992_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 19A2
..........................................................CTCCCACACCCAAGGCcTGCAG................. 27512_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 16C5
...........................................................TCCCACACCCAAGGCTTGCA.................. 13438_1_0_0_0_0_0 MATURE-3P 1 0.63 1 1.52 0 0.00 20
......................................................TACCCTCCCACACCCAAGGCTTGCc.................. 13275_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 24
........................................................CCCTCCCACACCCAAGGCcTGCAt................. 13922_1_0_0_0_0_0 MATURE-3P 1 0.63 1 1.52 0 0.00 18C4
..........................................................CTCCCACACCCAAGGCTTGCAa................. 41518_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 21
............................................................CCCACACCCAAGGCTTGCAc................. 40444_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 19
.........................................................CCcCCCACACCCAAGGCTTGCt.................. 18493_0_0_0_0_0_1 MATURE-3P 1 0.63 0 0.00 1 1.09 2C18
........................................................CCCTCCCACACCCAAGGCTaGCAa................. 7968_1_0_0_0_0_0 MATURE-3P 1 0.63 1 1.52 0 0.00 19A3
---------- ---------- ----------
158 66 92
(41.77) (58.23)
*** MATURE-5P ***
________________________________________________________________________________________________
CAGATTTGCTTTTTCTCTTCCATGCCTTGAGTGTAGGACCGTTGACATCTTAATTACCCTCCCACACCCAAGGCTTGCAGGAGAGCAAGCCTTCTC REF X 6825528 - 6825623
CCTCCCACACCCAAGGCTTGCA MATURE-3P X 6825586 - 6825702 mmu-miR-532-3p -
CATGCCTTGAGTGTAGGACCGT MATURE-5P X 6825549 - 6825665 mmu-miR-532-5p -
________________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
....................CATGCCTTGAGTGTAGaACCGT....................................................... 44217_92_0_0_0_0_154 MATURE-5P 246 25.00 92 23.35 154 26.10 16A5
....................CATGCCTTGAGTGTAGtACCGT....................................................... 42976_49_0_0_0_0_88 MATURE-5P 137 13.92 49 12.44 88 14.92 16T5
....................CATGCCTTGAGTGTAGcACCGT....................................................... 43385_32_0_0_0_0_64 MATURE-5P 96 9.76 32 8.12 64 10.85 16C5
....................CATGCCTTGAGTGTAGGACCGT....................................................... 42568_26_0_0_0_0_58 MATURE-5P 84 8.54 26 6.60 58 9.83 22
....................CATGCCTTGAGTGTAGGACCGTT...................................................... 19472_30_0_0_0_0_31 MATURE-5P 61 6.20 30 7.61 31 5.25 23
....................CATGCCTTGAGTGTAGGACCGTa...................................................... 42532_17_0_0_0_0_29 MATURE-5P 46 4.67 17 4.31 29 4.92 22
....................CATGCCTTGAGTGTAGGACCGTTt..................................................... 41661_19_0_0_0_0_15 MATURE-5P 34 3.46 19 4.82 15 2.54 23
....................CATGCCTTGAGTGTAGaACCGc....................................................... 34482_12_0_0_0_0_16 MATURE-5P 28 2.85 12 3.05 16 2.71 16A4
....................CATGCCTTGAGTGTAGGACCaTT...................................................... 43451_6_0_0_0_0_20 MATURE-5P 26 2.64 6 1.52 20 3.39 20A2
....................CATGCCTTGAGTGTAGGACCGTTa..................................................... 36737_14_0_0_0_0_5 MATURE-5P 19 1.93 14 3.55 5 0.85 23
....................CATGCCTTGAGTGTAGGACCGa....................................................... 38282_10_0_0_0_0_8 MATURE-5P 18 1.83 10 2.54 8 1.36 21
....................CATGCCTTGAGTGTAGGACCaTTt..................................................... 31819_8_0_0_0_0_7 MATURE-5P 15 1.52 8 2.03 7 1.19 20A2
....................CATGCCTTGAGTGTAGaACCGa....................................................... 42968_7_0_0_0_0_4 MATURE-5P 11 1.12 7 1.78 4 0.68 16A4
....................CATGCCTTGAGTGTAGGtCCGT....................................................... 23488_4_0_0_0_0_7 MATURE-5P 11 1.12 4 1.02 7 1.19 17T4
.....................ATGCCTTGAGTGTAGGACCaTT...................................................... 21429_5_0_0_0_0_5 MATURE-5P 10 1.02 5 1.27 5 0.85 19A2
....................CATGCCTTGAGTGTAGGtCCGTT...................................................... 26027_5_0_0_0_0_5 MATURE-5P 10 1.02 5 1.27 5 0.85 17T5
....................CATGCCTTGAGTGTAGaACCG........................................................ 34124_4_0_0_0_0_5 MATURE-5P 9 0.91 4 1.02 5 0.85 16A4
....................CATGCCTTGAGTGTAGGACCGTc...................................................... 19583_4_0_0_0_0_4 MATURE-5P 8 0.81 4 1.02 4 0.68 22
....................CATGCCTTGAGTGTAGtACCGa....................................................... 38828_1_0_0_0_0_7 MATURE-5P 8 0.81 1 0.25 7 1.19 16T4
....................CATGCCTTGAGTGTAaGACCG........................................................ 33485_4_0_0_0_0_3 MATURE-5P 7 0.71 4 1.02 3 0.51 15A5
....................CATGCCTTGAGTGTAGtACCGc....................................................... 26851_1_0_0_0_0_5 MATURE-5P 6 0.61 1 0.25 5 0.85 16T4
....................CATGCCTTGAGTGTAGGACCaTTa..................................................... 8991_3_0_0_0_0_3 MATURE-5P 6 0.61 3 0.76 3 0.51 20A2
....................CATGCCTTGAGTGTAGGAtCGT....................................................... 24166_3_0_0_0_0_2 MATURE-5P 5 0.51 3 0.76 2 0.34 18T3
....................CATGCCTTGAGTGTAGGACCcTT...................................................... 39846_0_0_0_0_0_5 MATURE-5P 5 0.51 0 0.00 5 0.85 20C2
....................CATGCCTTGAGTGTAGGACCG........................................................ 28326_2_0_0_0_0_3 MATURE-5P 5 0.51 2 0.51 3 0.51 21
....................CATGCCTTGAGTGTAGGcCCGTa...................................................... 32964_1_0_0_0_0_4 MATURE-5P 5 0.51 1 0.25 4 0.68 17C4
....................CATGCCTTGAGTGTAGGAaCGT....................................................... 38951_1_0_0_0_0_3 MATURE-5P 4 0.41 1 0.25 3 0.51 18A3
....................CATGCCTTGAGTGTAGaACCGg....................................................... 39490_2_0_0_0_0_2 MATURE-5P 4 0.41 2 0.51 2 0.34 16A4
....................CATGCCTTGAGTGTAGcACCGa....................................................... 23553_0_0_0_0_0_4 MATURE-5P 4 0.41 0 0.00 4 0.68 16C4
....................CATGCCTTGAGTGTAGtACCGg....................................................... 41276_3_0_0_0_0_1 MATURE-5P 4 0.41 3 0.76 1 0.17 16T4
....................CATGCCTTGAGTGTAGGACCGTg...................................................... 24640_1_0_0_0_0_2 MATURE-5P 3 0.30 1 0.25 2 0.34 22
....................CATGCCTTGAGTGTAGGcCCGT....................................................... 12677_1_0_0_0_0_2 MATURE-5P 3 0.30 1 0.25 2 0.34 17C4
....................CATGCCTTGAGTGTAGGcCCGTT...................................................... 10769_2_0_0_0_0_1 MATURE-5P 3 0.30 2 0.51 1 0.17 17C5
....................CATGCCTTGAGTGTAGGACaGT....................................................... 20087_0_0_0_0_0_3 MATURE-5P 3 0.30 0 0.00 3 0.51 19A2
....................CATGCCTTGAGTGTAGGACaGTT...................................................... 25998_1_0_0_0_0_1 MATURE-5P 2 0.20 1 0.25 1 0.17 19A3
.....................ATGCCTTGAGTGTAGGACCcTT...................................................... 19283_1_0_0_0_0_1 MATURE-5P 2 0.20 1 0.25 1 0.17 19C2
.....................ATGCCTTGAGTGTAGGACCGTTt..................................................... 35073_2_0_0_0_0_0 MATURE-5P 2 0.20 2 0.51 0 0.00 22
.....................ATGCCTTGAGTGTAGGACCGTa...................................................... 42450_1_0_0_0_0_1 MATURE-5P 2 0.20 1 0.25 1 0.17 21
....................CATGCCTTGAGTGTAGGACCGc....................................................... 34445_1_0_0_0_0_1 MATURE-5P 2 0.20 1 0.25 1 0.17 21
.....................ATGCCTTGAGTGTAGGACCaTTt..................................................... 40566_2_0_0_0_0_0 MATURE-5P 2 0.20 2 0.51 0 0.00 19A2
.....................ATGCCTTGAGTGTAGGACCGTT...................................................... 24210_2_0_0_0_0_0 MATURE-5P 2 0.20 2 0.51 0 0.00 22
....................CATGCCTTGAGTGTAGtACCG........................................................ 35816_2_0_0_0_0_0 MATURE-5P 2 0.20 2 0.51 0 0.00 16T4
....................CATGCCTTGAGTGTAGGACCGTTG..................................................... 7292_1_0_0_0_0_0 MATURE-5P 1 0.10 1 0.25 0 0.00 24
....................CATGCCTTGAGTGTAGGtCCGTa...................................................... 27224_0_0_0_0_0_1 MATURE-5P 1 0.10 0 0.00 1 0.17 17T4
...................CCATGCCTTGAGTGTAGcACCGT....................................................... 5752_1_0_0_0_0_0 MATURE-5P 1 0.10 1 0.25 0 0.00 17C5
....................CATGCCTTGAGTGTAGGACtGT....................................................... 17772_0_0_0_0_0_1 MATURE-5P 1 0.10 0 0.00 1 0.17 19T2
....................CATGCCTTGAGTGTAtGACCG........................................................ 20722_1_0_0_0_0_0 MATURE-5P 1 0.10 1 0.25 0 0.00 15T5
....................CATGCCTTGAGTGTAGGAC.......................................................... 40177_0_0_0_0_0_1 MATURE-5P 1 0.10 0 0.00 1 0.17 19
....................CATGCCTTGAGTGTAGGtCCGc....................................................... 13749_1_0_0_0_0_0 MATURE-5P 1 0.10 1 0.25 0 0.00 17T3
....................CATGCCTTGAGTGTAGcACCG........................................................ 13921_1_0_0_0_0_0 MATURE-5P 1 0.10 1 0.25 0 0.00 16C4
.....................ATGCCTTGAGTGTAGGACCaTTa..................................................... 22595_1_0_0_0_0_0 MATURE-5P 1 0.10 1 0.25 0 0.00 19A2
....................CATGCCTTGAGTGTAGGAgCGT....................................................... 12660_0_0_0_0_0_1 MATURE-5P 1 0.10 0 0.00 1 0.17 18G3
......................TGCCTTGAGTGTAGGACCcTTt..................................................... 17275_1_0_0_0_0_0 MATURE-5P 1 0.10 1 0.25 0 0.00 18C2
...................CCATGCCTTGAGTGTAGGACCGTc...................................................... 9305_0_0_0_0_0_1 MATURE-5P 1 0.10 0 0.00 1 0.17 23
....................CATGCCTTGAGTGTAGGAtCGTTt..................................................... 42990_1_0_0_0_0_0 MATURE-5P 1 0.10 1 0.25 0 0.00 18T4
....................CATGCCTTGAGTGTAGGcCCGTc...................................................... 19868_0_0_0_0_0_1 MATURE-5P 1 0.10 0 0.00 1 0.17 17C4
....................CATGCCTTGAGTGTAGGACtGTTt..................................................... 32127_1_0_0_0_0_0 MATURE-5P 1 0.10 1 0.25 0 0.00 19T3
....................CATGCCTTGAGTGTAGGACCGg....................................................... 40474_0_0_0_0_0_1 MATURE-5P 1 0.10 0 0.00 1 0.17 21
....................CATGCCTTGAGTGTAGGACaGTTt..................................................... 20572_0_0_0_0_0_1 MATURE-5P 1 0.10 0 0.00 1 0.17 19A3
....................CATGCCcTGAGTGTAGGACCGTTt..................................................... 18603_0_0_0_0_0_1 MATURE-5P 1 0.10 0 0.00 1 0.17 6C16
....................CATGCCTTGAGTGTAGGAgCGTT...................................................... 37680_1_0_0_0_0_0 MATURE-5P 1 0.10 1 0.25 0 0.00 18G4
..................TCCATGCCTTGAGTGTAGcACCGT....................................................... 17370_1_0_0_0_0_0 MATURE-5P 1 0.10 1 0.25 0 0.00 18C5
....................CATGCCTTGAGTGTAGGACCa........................................................ 13269_0_0_0_0_0_1 MATURE-5P 1 0.10 0 0.00 1 0.17 20
......................TGCCTTGAGTGTAGGACCaTT...................................................... 9379_1_0_0_0_0_0 MATURE-5P 1 0.10 1 0.25 0 0.00 18A2
....................CATGCCTTGAGTGTAGGACCGTTc..................................................... 30593_0_0_0_0_0_1 MATURE-5P 1 0.10 0 0.00 1 0.17 23
....................CATGCCTTGAGTGTAGGAaCGTa...................................................... 33526_1_0_0_0_0_0 MATURE-5P 1 0.10 1 0.25 0 0.00 18A3
---------- ---------- ----------
984 394 590
(40.04) (59.96)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE-3P 66 92 158 13.84%
MATURE-5P 394 590 984 86.16%
---------- ---------- ----------
460 682 1142
[END]