[BEGIN]
REFERENCE HAIRPIN
****************************************************************************************************
ID : mmu-mir-511
DESCRIPTION : mmu-mir-511 MI0005554 Mus musculus miR-511 stem-loop
CHROMOSOME : 2
SPAN : 14182630 - 14182708
LENGTH : 79
SEQUENCE : GATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCA
OVERHANG THRESHOLD : 40%
****************************************************************************************************
TARGET
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CATEGORY : MATURE
ID : mmu-miR-511
ACCID : MI0005554
PARENT : mmu-mir-511
CHROMOSOME : 2
START : 14182630
STOP : 14182708
OFFSET : 11..31
SEQUENCE : ATGCCTTTTGCTCTGCACTCA
STRAND : +
******************************
*** OTHER ***
_______________________________________________________________________________
GATACCCACCATGCCTTTTGCTCTGCACTCAGTAAATAATAATTTGTGAATGTGTAGCAAAAGACAGGATGGGGATCCA REF 2 14182630 - 14182708
ATGCCTTTTGCTCTGCACTCA MATURE 2 14182641 - 14182739 mmu-miR-511 +
_______________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
...............................................GAATGTGTAGCAAAAGACAGGAT.......... 29108_5_0_0_0_0_0 OTHER 5 14.29 5 15.62 0 0.00 23
...............................................GAATGTGTAGCAAAAGACAGaAT.......... 24389_3_0_0_0_0_0 OTHER 3 8.57 3 9.38 0 0.00 20A2
...............................................GAATGTGTAGCAAAAGACAGGAg.......... 3784_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 22
................................................AATGTGTAGCAAAAGACAGaATGa........ 3777_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 19A3
...............................................GAATGTGTAGCAAAAGACAGa............ 27972_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 20
...............................................GAATGTGTAGCAAAAGAtAGGAT.......... 11460_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 17T5
...............................................GAATGTGTAGCAAAAGACAaGAT.......... 27859_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 19A3
...............................................GAATGTGTAGCAAAAGACAGGATt......... 1961_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 23
...............................................GAATGTGTAGCAAAAGAaAGGA........... 4457_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 17A4
..............................................TGAATGTGTAGCAAAAGACAGGAT.......... 6486_0_0_0_0_0_1 OTHER 1 2.86 0 0.00 1 33.33 24
...............................................GAATGTGTAGCAAAAGACAtGAT.......... 2723_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 19T3
...............................................GAATGTGTAGCAAAAGACAGGA........... 34539_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 22
...............................................GAATGTGTAGCAAAAGAaAGGAT.......... 3714_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 17A5
.................................................ATGTGTAGCAAAAGACAGGAa.......... 30064_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 20
...............................................GAATGTGTAGCAAAAGACAaGATa......... 23582_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 19A3
...............................................GAATGTGTAGCAAAAGACAGGAc.......... 18472_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 22
.............................................GTGAATGTGTAGCAAAAGAgAGGAT.......... 33390_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 19G5
...............................................GAATGTGTAGCAAAAGAgAGGAa.......... 18862_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 17G4
...............................................GAATGTGTAGCAAAAGAgAGGAT.......... 11958_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 17G5
...............................................GAATGTGTAGCAAAAGACAGGAa.......... 16129_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 22
..............................................TGAATGTGTAGCAAAAGACAGGA........... 13964_0_0_0_0_0_1 OTHER 1 2.86 0 0.00 1 33.33 23
...............................................GAATGTGTAGCAAAAGACAaGA........... 31102_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 19A2
...............................................GAATGTGTAGCAAAAGACcGGAT.......... 37452_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 18C4
...............................................GAATGTGTAGCAAAAGACAGGATG......... 8352_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 24
...............................................GAATGTGTAGCAAAAGcCAGGA........... 25801_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 16C5
...............................................GAATGTGTAGCAAAAGACAGaATGa........ 622_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 20A3
...............................................GAATGTGTAGCAAAAGACAcGA........... 5390_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 19C2
...............................................GAATGTGTAGCAAAAGACAGaATa......... 9469_0_0_0_0_0_1 OTHER 1 2.86 0 0.00 1 33.33 20A2
...............................................GAATGTGTAGCAAAAGACtGGAT.......... 24078_1_0_0_0_0_0 OTHER 1 2.86 1 3.12 0 0.00 18T4
---------- ---------- ----------
35 32 3
(91.43) (8.57)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
OTHER 32 3 35 100.00%
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32 3 35
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