[BEGIN]
REFERENCE HAIRPIN
***************************************************************************************************************
ID : mmu-mir-505
DESCRIPTION : mmu-mir-505 MI0004706 Mus musculus miR-505 stem-loop
CHROMOSOME : X
SPAN : 57647578 - 57647667
LENGTH : 90
SEQUENCE : AAATTGATGCACCCAGTGGGGGAGCCAGGAAGTATTGATGTTTCTGCCAGGTTAGCGTCAACACTTGCTGGTTTTCTCTCTGGAGTATCA
OVERHANG THRESHOLD : 40%
***************************************************************************************************************
TARGET
******************************
CATEGORY : MATURE
ID : mmu-miR-505
ACCID : MI0004706
PARENT : mmu-mir-505
CHROMOSOME : X
START : 57647578
STOP : 57647667
OFFSET : 56..77
SEQUENCE : CGTCAACACTTGCTGGTTTTCT
STRAND : -
******************************
*** MATURE ***
__________________________________________________________________________________________
AAATTGATGCACCCAGTGGGGGAGCCAGGAAGTATTGATGTTTCTGCCAGGTTAGCGTCAACACTTGCTGGTTTTCTCTCTGGAGTATCA REF X 57647578 - 57647667
CGTCAACACTTGCTGGTTTTCT MATURE X 57647634 - 57647744 mmu-miR-505 -
__________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
........................................................GTCAACACTTGCTGGTTTTCT.............. 36300_3_0_0_0_0_1 MATURE 4 40.00 3 50.00 1 25.00 21
........................................................GTCAACACTTGCTGGTTTTCTCTt........... 31358_1_0_0_0_0_1 MATURE 2 20.00 1 16.67 1 25.00 23
........................................................GTCAACACTTGCTGGTTTaCTCT............ 31920_0_0_0_0_0_1 MATURE 1 10.00 0 0.00 1 25.00 18A4
............................................................ACACTTGCTGGTTTTCTCT............ 167_1_0_0_0_0_0 MATURE 1 10.00 1 16.67 0 0.00 19
........................................................GTCAACACTTGCTGGTTaTCT.............. 30244_1_0_0_0_0_0 MATURE 1 10.00 1 16.67 0 0.00 17A3
........................................................GTCAACACTTGCTGGcTTTCT.............. 7419_0_0_0_0_0_1 MATURE 1 10.00 0 0.00 1 25.00 15C5
---------- ---------- ----------
10 6 4
(60.00) (40.00)
*** OTHER ***
__________________________________________________________________________________________
AAATTGATGCACCCAGTGGGGGAGCCAGGAAGTATTGATGTTTCTGCCAGGTTAGCGTCAACACTTGCTGGTTTTCTCTCTGGAGTATCA REF X 57647578 - 57647667
CGTCAACACTTGCTGGTTTTCT MATURE X 57647634 - 57647744 mmu-miR-505 -
__________________________________________________________________________________________
-SEQ- -READ- -CAT- -TOTAL- -TOT%- -REST- -REST%- -ACT- -ACT%- -VAR- -MISMATCH-
..................GGGGAGCCAGGAAGTATTGATGTT................................................. 36659_3_0_0_0_0_2 OTHER 5 16.13 3 17.65 2 14.29 24
.................GGGGGAGCCAGGAAGTATTGATGTT................................................. 16484_1_0_0_0_0_2 OTHER 3 9.68 1 5.88 2 14.29 25
..................GGGGAGCCAGGAAGTATTGATGTTT................................................ 29061_1_0_0_0_0_2 OTHER 3 9.68 1 5.88 2 14.29 25
.................GGGGGAGCCAGGAAGTATTaATGT.................................................. 40686_1_0_0_0_0_1 OTHER 2 6.45 1 5.88 1 7.14 19A4
..................GGGGAGCCAGGAAGTATTGcTGTTT................................................ 2486_2_0_0_0_0_0 OTHER 2 6.45 2 11.76 0 0.00 19C5
...................GGGAGCCAGGAAGTATTGAgGTTT................................................ 33601_0_0_0_0_0_1 OTHER 1 3.23 0 0.00 1 7.14 19G4
.................GGGGGAGCCAGGAAGTATTGATGTa................................................. 43151_1_0_0_0_0_0 OTHER 1 3.23 1 5.88 0 0.00 24
..................GGGGAGCCAGGAAGTATTcATGTT................................................. 8957_0_0_0_0_0_1 OTHER 1 3.23 0 0.00 1 7.14 18C5
.................GGGGGAGCCAGGAAGTATTGAaGT.................................................. 5067_0_0_0_0_0_1 OTHER 1 3.23 0 0.00 1 7.14 21A2
..................GGGGAGCCAGGAAGTATTGAcGT.................................................. 8041_1_0_0_0_0_0 OTHER 1 3.23 1 5.88 0 0.00 20C2
...................GGGAGCCAGGAAGTATTGAaGTT................................................. 42569_1_0_0_0_0_0 OTHER 1 3.23 1 5.88 0 0.00 19A3
..................GGGGAGCCAGGAAGTATTGATaTT................................................. 16263_0_0_0_0_0_1 OTHER 1 3.23 0 0.00 1 7.14 21A2
..................GGGGAGCCAGGAAGTATTGAaGTTT................................................ 4638_0_0_0_0_0_1 OTHER 1 3.23 0 0.00 1 7.14 20A4
..................GGGGAGCCAGGAAGTATTGATGTTa................................................ 19422_0_0_0_0_0_1 OTHER 1 3.23 0 0.00 1 7.14 24
..................GGGGAGCCAGGAAGTATTGgTGTTT................................................ 1733_1_0_0_0_0_0 OTHER 1 3.23 1 5.88 0 0.00 19G5
..................GGGGAGCCAGGAAGTATTGATt................................................... 42181_0_0_0_0_0_1 OTHER 1 3.23 0 0.00 1 7.14 21
.................GGGGGAGCCAGGAAGTATTcATGTT................................................. 18687_1_0_0_0_0_0 OTHER 1 3.23 1 5.88 0 0.00 19C5
.................GGGGGAGCCAGGAAGTATTGATaTT................................................. 33603_1_0_0_0_0_0 OTHER 1 3.23 1 5.88 0 0.00 22A2
...................GGGAGCCAGGAAGTATTGATGT.................................................. 42389_1_0_0_0_0_0 OTHER 1 3.23 1 5.88 0 0.00 22
..................GGGGAGCCAGGAAGTATTGATGaTT................................................ 13953_1_0_0_0_0_0 OTHER 1 3.23 1 5.88 0 0.00 22A2
..................GGGGAGCCAGGAAGTATTGAaGTT................................................. 16078_1_0_0_0_0_0 OTHER 1 3.23 1 5.88 0 0.00 20A3
---------- ---------- ----------
31 17 14
(54.84) (45.16)
((( SUMMARY )))
-CAT- -REST- -ACT- -TOTAL- -TOTAL%-
---------- ---------- ---------- ---------- ----------
MATURE 6 4 10 24.39%
OTHER 17 14 31 75.61%
---------- ---------- ----------
23 18 41
[END]